Team:UGA-Georgia

From 2014.igem.org

(Difference between revisions)
 
(102 intermediate revisions not shown)
Line 3: Line 3:
<html>
<html>
 +
 +
 +
<style>
 +
#contentSub, #footer-box, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading,.visualClear {display: none;} /*-- hides default wiki settings --*/
 +
 +
 +
    <style>
 +
    #sddm
 +
{ margin: 0;
 +
padding: 0;
 +
z-index: 30}
 +
 +
#sddm li
 +
{ margin: 0;
 +
padding: 0;
 +
list-style: none;
 +
float: left;
 +
font: bold 11px arial}
 +
 +
#sddm li a
 +
{ display: block;
 +
margin: 0 1px 0 0;
 +
padding: 4px 10px;
 +
width: 60px;
 +
background: #5970B2;
 +
color: #FFF;
 +
text-align: center;
 +
text-decoration: none}
 +
 +
#sddm li a:hover
 +
{ background: #49A3FF}
 +
 +
#sddm div
 +
{ position: absolute;
 +
visibility: hidden;
 +
margin: 0;
 +
padding: 0;
 +
background:  #EAEBD8;
 +
border: 1px solid #5970B2}
 +
 +
#sddm div a
 +
{ position: relative;
 +
display: block;
 +
margin: 0;
 +
padding: 5px 84px;
 +
width: auto;
 +
white-space: nowrap;
 +
text-align: left;
 +
text-decoration: none;
 +
background: #FEE5AD;
 +
color: #000000;
 +
font: 15px arial}
 +
 +
#sddm div a:hover
 +
{ background: #49A3FF;
 +
color: #FFF}
 +
</style>
 +
 +
<html>
 +
<head>
 +
<style>
 +
body {
 +
  background-color:white;
 +
background-image: linear-gradient(90deg, rgba(200,0,0,.5) 50%, transparent 50%),
 +
linear-gradient(rgba(200,0,0,.5) 50%, transparent 50%);
 +
background-size:50px 50px;
 +
</style>
 +
</head>
 +
<body>
 +
 +
<script>
 +
      var timeout = 500;
 +
      var closetimer = 0;
 +
      var ddmenuitem = 0;
 +
 +
// open hidden layer
 +
      function mopen(id)
 +
      {
 +
    // cancel close timer
 +
    mcancelclosetime();
 +
    // close old layer
 +
    if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
 +
    // get new layer and show it
 +
    ddmenuitem = document.getElementById(id);
 +
    ddmenuitem.style.visibility = 'visible';
 +
    }
 +
// close showed layer
 +
      function mclose()
 +
      {
 +
    if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
 +
      }
 +
 +
// go close timer
 +
      function mclosetime()
 +
      {
 +
  closetimer = window.setTimeout(mclose, timeout);
 +
      }
 +
 +
// cancel close timer
 +
      function mcancelclosetime()
 +
      {
 +
  if(closetimer)
 +
  {
 +
window.clearTimeout(closetimer);
 +
closetimer = null;
 +
  }
 +
}
 +
 +
// close layer when click-out
 +
    document.onclick = mclose;
 +
    </script>
<style>
<style>
img.center {
img.center {
Line 11: Line 122:
</style>
</style>
<!--main content -->
<!--main content -->
-
<img class="center" src="https://sacs.uga.edu/compliance/references/3.9/3.9.1/3.9.1ArchPhoto[1].jpg" width="700" height="600">
+
<table width="70%" align="center" bgcolor="#FF9999">
-
<table width="90%" align="center">
+
-
<!--navigation menu -->
 
-
<td align="center" colspan="3">
 
-
<table  width="100%" >
 
-
<tr heigth="15px"></tr>
 
-
<tr heigth="75px">
 
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff> 
 
-
<a href="https://2014.igem.org/Team:UGA-Georgia"style="color:#000000"><p style="font-family: Basic L"><font size="2">HOME</font></p> </a> </td>
 
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>
+
<!--navigation menu -->
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Team"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>TEAM</b></font></p> </a> </td>
+
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>
+
<td align="center" colspan="3">
-
<a href="https://igem.org/Team.cgi?year=2014&team_name=UGA-Georgia"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>OFFICIAL TEAM PROFILE</b></font></p> </a></td>
+
-
<td style="border:1px #fff" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>
+
<table width="100%" id="sddm">
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Project"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>PROJECT</b></font></p></a></td>
+
<tr heigth="15px"></tr>
-
 
+
<tr heigth="75px">  
-
<td style="border:1px #fff;" align="center"  height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>
+
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Parts"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>PARTS</b></font></p></a></td>
+
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>  
+
<div id="banner"><img id="idSelector" src="https://static.igem.org/mediawiki/2014/f/fa/Bannerugafinal.png" width="100%" height="100" align="center"></div> 
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Modeling"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>MODELING</b></font></p></a></td>
+
<td style="border:1px #fff;" align="center" height ="45px"  width="250" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD>
 +
<a href="https://2014.igem.org/Team:UGA-Georgia" ><p style="font-family: Basic L"><font size="2">HOME</font></p> </a> </td>
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>   
+
<td style="border:1px #fff" align="center" height ="45px" width="250" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD>   
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Notebook"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>NOTEBOOK</b></font></p></a></td>
+
<a href="#" onmouseover="mopen('m1')"
 +
        onmouseout="mclosetime()" style="color:#000000" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD><p style="font-family: Basic L"><font size="2"><b>PROJECT</b></font></p></a>
 +
        <div id="m1"
 +
            onmouseover="mcancelclosetime()"
 +
            onmouseout="mclosetime()">
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Overview">Overview</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Geraniol">Geraniol</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Modeling">Modeling</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/RBS">RBS Library</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Parts">Parts</a>
 +
        </div></td>
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>  
+
<td style="border:1px #fff;" align="center" height ="45px" width="250" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD>
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Safety"style=" color:#000000"><p style="font-family: Basic L"><font size="2"><b>SAFETY</b></font></p></a></td>
+
<a href="#" onmouseover="mopen('m3')"
 +
        onmouseout="mclosetime()" style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>WET LAB</b></font></p></a>
 +
                <div id="m3"
 +
            onmouseover="mcancelclosetime()"
 +
            onmouseout="mclosetime()">
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Safety">Safety</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Notebook">Notebook</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Protocols">Protocols</a>
 +
        </div></td>
-
<td style="border:1px #fff;" align="center" height ="45px" onMouseOver="this.bgColor='#ffffff'" onMouseOut="this.bgColor='#ffffff'" bgColor=#ffffff>  
+
<td style="border:1px #fff;" align="center" height ="45px" width="250" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD>
-
<a href="https://2014.igem.org/Team:UGA-Georgia/Attributions"style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>ATTRIBUTIONS</b></font></p> </a></td>
+
<a href="#" onmouseover="mopen('m4')"
 +
        onmouseout="mclosetime()" style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>HUMAN PRACTICES</b></font></p></a>
 +
                <div id="m4"
 +
            onmouseover="mcancelclosetime()"
 +
            onmouseout="mclosetime()">
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Outreach">Outreach</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Seminars">Seminars</a>
 +
        </div></td>
 +
<td style="border:1px #fff;" align="center"  height ="45px" width="250" onMouseOver="this.bgColor='#FF000'" onMouseOut="this.bgColor='#FEE5AD'" bgColor=#FEE5AD>
 +
<a href="#" onmouseover="mopen('m2')"
 +
        onmouseout="mclosetime()" style="color:#000000"><p style="font-family: Basic L"><font size="2"><b>TEAM</b></font></p></a>
 +
                <div id="m2"
 +
            onmouseover="mcancelclosetime()"
 +
            onmouseout="mclosetime()">
 +
        <a href="https://igem.org/Team.cgi?id=1383">Official Team Profile</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Team">Members</a>
 +
        <a href="https://2014.igem.org/Team:UGA-Georgia/Attributions">Attributions</a>
 +
       
 +
        </div></td>
-
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
+
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/2014/d/d2/UGA-iGEM_Logo.jpg" width="55px"></a> </td>
</tr>
</tr>
</table>
</table>
<!--end navigation menu -->
<!--end navigation menu -->
-
</tr>
 
-
</tr>
 
-
 
-
 
+
<!-- First block of content -->
-
</td>
+
<table id="firstblock" width="100%" cellspacing="0" height="500px">
-
 
+
-
<tr> <td colspan="3" height="15px"> </td></tr>
+
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1px"> </tr>
+
-
<tr> <td colspan="3"  height="5px"> </td></tr>
+
-
 
+
-
<!--project description section -->
+
-
<tr><td colspan="3"> <h3> Project Description </h3></td></tr>
+
-
 
+
<tr>
<tr>
-
<td width="45%" valign="top">
+
<td  bgColor="#FFFFFF"></td>
 +
<td width="975px" align="center" bgColor="#FFFFFF" >
-
<p>The 2014 University of Georgia iGEM team focuses on <em>two main goals</em>: <br><br>First, we aim to make methanogens a more tangible host for synthetic biologists. To achieve this, we are creating a metabolic flux model for the lipid biosynthesis pathway in <i>Methanococcus maripaludis</i>. Our goal is to map the entire pathway, complete a genome-scale flux balance analysis, and develop strategies for overproduction of isoprenoid compounds. In addition, ribosome binding sites (RBS) are not well characterized in Archaea, so we are creating a library of RBS sequences and measuring their relative strength of fluorescence. A library of RBS will allow us the ability for variable levels of expression. Also, we are developing new methods for extracting, concentrating, measuring and quantifying organically soluble material from <i>M. maripaludis</i> cultures.</p>
+
<img src="https://static.igem.org/mediawiki/2014/1/18/IGEM_graphic2.jpg" width="300px" height="450px" >
-
</td>
+
<h3>Welcome!  <p>The New Archaea-Type
-
<td> </td>
+
</h3>
-
<td width="45%">
+
<p>Scroll down to find more about our project! </p>
-
<p>Second, we are demonstrating the utility of methanogens in synthetic biology by the optimized production of geraniol, an organically soluble material. Following up on the work from the 2013 iGEM season, we’ve continued targeting geraniol as a high value bio-chemical which may be produced from inexpensive substrates such as H2/CO2 or formate. Uses of Geraniol include potential biofuel, organic pesticide, tumor suppressor of breast, colon and prostate cancers, fragrances and flavorings. Last year, geraniol production in <i>M. maripaludis</i> was quantified as 0.2% of lipid dry weight. This year, UGA-iGEM seeks to address the overall geraniol yield through several projects which satisfy both of our main goals mentioned above.<br></p></tr>
+
</td>
 +
<td bgColor="#FFFFFF"></td>
 +
</tr>
 +
</table>
 +
<!-- end of first block -->
-
<!--requirements section -->
+
<!-- Block of content 1 -->
-
<tr><td colspan="3"> <h3> Requirements </h3></td></tr>
+
<table width="100%"  cellspacing="0" height="400px">
 +
<tr><td bgColor="#FEE5AD"></td>
 +
<td width="975px" align="center" bgColor="#FEE5AD 80%" >
 +
<table  width="975px"  cellspacing="0" height="400px">
<tr>
<tr>
-
<td width="45%"  valign="top">
 
-
<p> Please be sure to keep these links, your audience will want to find your: </p>
+
<td width="95%" bgColor="#FEE5AD"  rowspan="3" align="center">  
-
<!-- Links to other team pages -->
 
-
<ul>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia">Home</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Team">Team</a> </li>
 
-
<li><a href="https://igem.org/Team.cgi?year=2013&team_name=UGA-Georgia">Official Team Profile</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Project">Project</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Parts">Parts</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Modeling">Modeling</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Notebook">Notebook</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Safety">Safety</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:UGA-Georgia/Attributions">Attributions</a> </li>
 
-
</ul>
+
<!-- Content goes here -->
-
</td>
+
<h3>Read about our projects!</h3>
-
<td > </td>
+
<p>The 2014 University of Georgia iGEM team focuses on <em>two main goals</em>: <br><br>First, we aim to make methanogens a more tangible host for synthetic biologists. To achieve this, we are creating a metabolic flux model for the lipid biosynthesis pathway in <i>Methanococcus maripaludis</i>. Our goal is to map the entire pathway, complete a genome-scale flux balance analysis, and develop strategies for overproduction of isoprenoid compounds. In addition, ribosome binding sites (RBS) are not well characterized in Archaea, so we are creating a library of RBS sequences and measuring their relative strength of fluorescence. A library of RBS will allow us the ability for variable levels of expression. Also, we are developing new methods for extracting, concentrating, measuring and quantifying organically soluble material from <i>M. maripaludis</i> cultures.<p>
-
<td width="45%">
+
-
<p>There are a few wiki requirements teams must follow:</p>
 
-
<ul>
 
-
<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
 
-
<li>All pages must be created under the team’s name space.</li>
 
-
<li>As part of your documentation, keep the links from the menu to the left. </li>
 
-
<li>Do not use flash in wiki code. </li>
 
-
<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
 
-
</ul>
 
-
<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
 
-
</td>
 
-
</tr>
 
 +
<p>Second, we are demonstrating the utility of methanogens in synthetic biology by the optimized production of geraniol, an organically soluble material. Following up on the work from the 2013 iGEM season, we’ve continued targeting geraniol as a high value bio-chemical which may be produced from inexpensive substrates such as H2/CO2 or formate. Uses of Geraniol include potential biofuel, organic pesticide, tumor suppressor of breast, colon and prostate cancers, fragrances and flavorings. Last year, geraniol production in <i>M. maripaludis</i> was quantified as 0.2% of lipid dry weight. This year, UGA-iGEM seeks to address the overall geraniol yield through several projects which satisfy both of our main goals mentioned above.<p>
-
<tr> <td colspan="3"  height="15px"> </td></tr>
 
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1"> </tr>
 
 +
</td> 
-
<!--tips  -->
 
-
<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
 
-
<tr>
+
<!-- This is the back to top button -->
-
<td width="45%" valign="top">  
+
<td bgColor=#FEE5AD> </td>
-
<p>We are currently working on providing teams with some easy to use design templates.
+
<tr><td bgColor=#FEE5AD></td></tr>
-
<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
+
<tr> <td  height="20px" width="5%" align="center" onMouseOver="this.bgColor='#FF0000'" onMouseOut="this.bgColor='#A1DBB2'" bgColor=#A1DBB2>  
-
 
+
<a href="#sddm" style="text-decoration:none;color:#1C140D"> Top </a> </td></tr>
-
<ul>
+
</table>
-
<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
+
-
<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
+
-
<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
+
-
<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
+
-
<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
+
-
</ul>
+
-
 
+
-
<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a> lists. </p>
+
-
</td>
+
-
 
+
-
<td> </td>
+
-
<td width="45%">  
+
-
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
 
-
<ul>
 
-
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
 
-
<li>Be clear about what you are doing and what you plan to do.</li>
 
-
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
 
-
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
 
-
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
 
-
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
 
-
<li>Have lots of fun! </li>
 
-
</ul>
 
-
</br>
 
</td>
</td>
 +
<td bgColor="#FEE5AD"></td>
</tr>
</tr>
</table>
</table>
 +
<!-- end of Block—>
 +
</body>
 +
</html>

Latest revision as of 02:19, 18 October 2014


HOME

PROJECT

WET LAB

HUMAN PRACTICES

TEAM

Welcome!

The New Archaea-Type

Scroll down to find more about our project!

Read about our projects!

The 2014 University of Georgia iGEM team focuses on two main goals:

First, we aim to make methanogens a more tangible host for synthetic biologists. To achieve this, we are creating a metabolic flux model for the lipid biosynthesis pathway in Methanococcus maripaludis. Our goal is to map the entire pathway, complete a genome-scale flux balance analysis, and develop strategies for overproduction of isoprenoid compounds. In addition, ribosome binding sites (RBS) are not well characterized in Archaea, so we are creating a library of RBS sequences and measuring their relative strength of fluorescence. A library of RBS will allow us the ability for variable levels of expression. Also, we are developing new methods for extracting, concentrating, measuring and quantifying organically soluble material from M. maripaludis cultures.

Second, we are demonstrating the utility of methanogens in synthetic biology by the optimized production of geraniol, an organically soluble material. Following up on the work from the 2013 iGEM season, we’ve continued targeting geraniol as a high value bio-chemical which may be produced from inexpensive substrates such as H2/CO2 or formate. Uses of Geraniol include potential biofuel, organic pesticide, tumor suppressor of breast, colon and prostate cancers, fragrances and flavorings. Last year, geraniol production in M. maripaludis was quantified as 0.2% of lipid dry weight. This year, UGA-iGEM seeks to address the overall geraniol yield through several projects which satisfy both of our main goals mentioned above.

Top