Team:Kyoto/Notebook
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<!--以下、igemの作ったヘッダー。何故かレイアウトに表のタグを使用している。--> | <!--以下、igemの作ったヘッダー。何故かレイアウトに表のタグを使用している。--> | ||
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<h2>Calendar</h2> | <h2>Calendar</h2> | ||
</html> | </html> | ||
- | {{Kyoto/Notebook | + | {{Kyoto/Notebook/Calendar}} |
<html> | <html> | ||
+ | <div id="kyoto-notebook"> | ||
<!--以下、テンプレート。コピペして使って下さい。 | <!--以下、テンプレート。コピペして使って下さい。 | ||
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- | <p><a href="https://2014.igem.org/Team:Kyoto/ | + | <p><a href="https://2014.igem.org/Team:Kyoto/Notebook/DMS_Synthesis">アメフラシはこちら</a></p> |
- | < | + | <div> |
- | < | + | <a name="0715" class="kyoto-jump"></a> |
+ | <h3>7/15</h3> | ||
+ | <h4>transformation</h4> | ||
<span class="author">Tatsui, Matsumoto and Sukegawa</span> | <span class="author">Tatsui, Matsumoto and Sukegawa</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_J23101(Pcon)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_J23101(Pcon)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | ||
<tr><td>BBa_B0032(RBS)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_B0032(RBS)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0716" class="kyoto-jump"></a> |
+ | <h3>7/16</h3> | ||
+ | <h4>transformation</h4> | ||
<span class="author">Tatsui</span> | <span class="author">Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_B0030(1)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_B0030(1)</td><td>2</td><td>20(2/23)</td><td>22</td><td>LB(CP)</td></tr> | ||
<tr><td>BBa_B0030(2)</td><td>2</td><td>20(bought)</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_B0030(2)</td><td>2</td><td>20(bought)</td><td>22</td><td>LB(CP)</td></tr> | ||
Line 75: | Line 79: | ||
<tr><td>BBa_B0032(2)</td><td>2</td><td>20(bought)</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_B0032(2)</td><td>2</td><td>20(bought)</td><td>22</td><td>LB(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0717" class="kyoto-jump"></a> |
+ | <h3>7/17</h3> | ||
+ | <h4>Colony PCR</h4> | ||
<span class="author">Tatsui, Matsumoto, Li, and Yamauchi</span> | <span class="author">Tatsui, Matsumoto, Li, and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th> | + | <tr><th>NameⅠ</th><th>NameⅡ</th></tr> |
- | <tr><td>7/16 BBa_B0030(1) Colony_1</td></tr> | + | <tr><td>7/16 BBa_B0030(1) Colony_1</td><td>7/16 BBa_B0032(1) Colony_1</td></tr> |
- | <tr><td>7/16 BBa_B0030(1) Colony_2</td | + | <tr><td>7/16 BBa_B0030(1) Colony_2</td><td>7/16 BBa_B0032(1) Colony_2</td></tr> |
- | + | <tr><td>7/16 BBa_B0030(1) Colony_3</td><td>7/16 BBa_B0032(1) Colony_3</td></tr> | |
- | <tr><td>7/16 BBa_B0030( | + | <tr><td>7/16 BBa_B0030(2) Colony_1</td><td>7/16 BBa_B0032(2) Colony_1</td></tr> |
- | + | <tr><td>7/16 BBa_B0030(2) Colony_2</td><td>7/16 BBa_B0032(2) Colony_2</td></tr> | |
- | <tr><td>7/16 BBa_B0030(2) | + | <tr><td>7/16 BBa_B0030(2) Colony_3</td><td>7/16 BBa_B0032(2) Colony_3</td></tr> |
- | + | <tr><td>Negative Control</td><td>-</td></tr> | |
- | <tr><td>7/16 | + | <tr><td>-</td><td>-</td></tr> |
- | + | ||
- | <tr><td>7/16 | + | |
- | + | ||
- | <tr><td> | + | |
- | <tr><td> | + | |
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">Tatsui, Matsumoto, Li, and Yamauchi</span> | <span class="author">Tatsui, Matsumoto, Li, and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
Line 113: | Line 115: | ||
<tr><td>7/16 BBa_B0032(2) Colony_3</td><td>Plusgrow medium(CP)</td></tr> | <tr><td>7/16 BBa_B0032(2) Colony_3</td><td>Plusgrow medium(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0718" class="kyoto-jump"></a> |
+ | <h3>7/18</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Tatsui, Matsumoto, Tsujii, Stephane, and Yamauchi</span> | <span class="author">Tatsui, Matsumoto, Tsujii, Stephane, and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
Line 132: | Line 137: | ||
<tr><td>7/16 BBa_B0032(2) Colony_3</td><td>194</td><td>1.89</td><td>1.33</td></tr> | <tr><td>7/16 BBa_B0032(2) Colony_3</td><td>194</td><td>1.89</td><td>1.33</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0730" class="kyoto-jump"></a> |
+ | <h3>7/30</h3> | ||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
Line 142: | Line 150: | ||
<tr><td>7/16 BBa_B0030(2) Colony_1</td><td>1</td><td>0</td><td>0</td><td>0.3</td><td>0</td><td>1(M)</td><td>0</td><td>7.7</td><td>10</td></tr> | <tr><td>7/16 BBa_B0030(2) Colony_1</td><td>1</td><td>0</td><td>0</td><td>0.3</td><td>0</td><td>1(M)</td><td>0</td><td>7.7</td><td>10</td></tr> | ||
<tr><td>7/16 BBa_B0030(2) Colony_1</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0.3</td><td>1(H)</td><td>0</td><td>7.7</td><td>10</td></tr> | <tr><td>7/16 BBa_B0030(2) Colony_1</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0.3</td><td>1(H)</td><td>0</td><td>7.7</td><td>10</td></tr> | ||
- | <tr><td> | + | <tr><td>7/16 BBa_B0030(2) Colony_1(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(M)</td><td>0</td><td>8</td><td>10</td></tr> |
</table> | </table> | ||
- | < | + | <h4>Electrophoresis</h4> |
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</td></tr> | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</td></tr> | ||
- | <tr><td>1</td><td> | + | <tr><td>1</td><td>7/30 BBa_B0030(2) Colony_1(E CUT)</td></tr> |
- | <tr><td>2</td><td> | + | <tr><td>2</td><td>7/30 BBa_B0030(2) Colony_1(X CUT)</td></tr> |
- | <tr><td>3</td><td> | + | <tr><td>3</td><td>7/30 BBa_B0030(2) Colony_1(S CUT)</td></tr> |
- | <tr><td>4</td><td> | + | <tr><td>4</td><td>7/30 BBa_B0030(2) Colony_1(P CUT)</td></tr> |
- | <tr><td>5</td><td> | + | <tr><td>5</td><td>7/30 BBa_B0030(2) Colony_1(Nega)</td></tr> |
<tr><td>6</td><td>1kbp ladder</td></tr> | <tr><td>6</td><td>1kbp ladder</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0731" class="kyoto-jump"></a> |
+ | <h3>7/31</h3> | ||
+ | <h4>Transformation</h4> | ||
<span class="author">Hashitani, Tatsui, Li and Yamauchi</span> | <span class="author">Hashitani, Tatsui, Li and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_E0240(RBS-GFP-DT)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_E0240(RBS-GFP-DT)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | ||
<tr><td>J23100(Pcon)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | <tr><td>J23100(Pcon)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | ||
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
Line 178: | Line 189: | ||
</table> | </table> | ||
- | < | + | <h4>Restriction Enzyme Digestion</h4> |
<span class="author">Hashitani, Tatsui, Li and Yamauchi</span> | <span class="author">Hashitani, Tatsui, Li and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
Line 186: | Line 197: | ||
<tr><td>BBa_B0032</td><td>5</td><td>0</td><td>0</td><td>0.3</td><td>0</td><td>1(H)</td><td>0</td><td>3.7</td><td>10</td></tr> | <tr><td>BBa_B0032</td><td>5</td><td>0</td><td>0</td><td>0.3</td><td>0</td><td>1(H)</td><td>0</td><td>3.7</td><td>10</td></tr> | ||
<tr><td>BBa_B0032</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0.3</td><td>1(M)</td><td>1</td><td>2.7</td><td>10</td></tr> | <tr><td>BBa_B0032</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0.3</td><td>1(M)</td><td>1</td><td>2.7</td><td>10</td></tr> | ||
- | <tr><td> | + | <tr><td>BBa_B0032(Nega)</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(M)</td><td>0</td><td>4</td><td>10</td></tr> |
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0801" class="kyoto-jump"></a> |
+ | <h3>8/1</h3> | ||
+ | <h4>Electrophoresis</h4> | ||
<span class="author">Honda, Li and Yamauchi</span> | <span class="author">Honda, Li and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</td></tr> | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</td></tr> | ||
<tr><td>1</td><td>1kb ladder</td></tr> | <tr><td>1</td><td>1kb ladder</td></tr> | ||
- | <tr><td>2</td><td> | + | <tr><td>2</td><td>7/31 BBa_B0032(E CUT)</td></tr> |
- | <tr><td>3</td><td> | + | <tr><td>3</td><td>7/31 BBa_B0032(S CUT)Error</td></tr> |
<tr><td>4</td><td>-</td></tr> | <tr><td>4</td><td>-</td></tr> | ||
<tr><td>5</td><td>-</td></tr> | <tr><td>5</td><td>-</td></tr> | ||
- | <tr><td>6</td><td> | + | <tr><td>6</td><td>7/31 BBa_B0032(P CUT)</td></tr> |
- | <tr><td>7</td><td> | + | <tr><td>7</td><td>7/31 BBa_B0032(X CUT)</td></tr> |
- | <tr><td>8</td><td> | + | <tr><td>8</td><td>7/31 BBa_B0032(Nega)</td></tr> |
</table> | </table> | ||
- | < | + | <h4>PCR</h4> |
- | + | ||
<span class="author">Tatsui</span> | <span class="author">Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
<tr><th>BBa_E0240(RBS-GFP-DT)</th><th>Volume</th></tr> | <tr><th>BBa_E0240(RBS-GFP-DT)</th><th>Volume</th></tr> | ||
- | <tr><td>10×buffur</td><td> | + | <tr><td>10×buffur/(µl)</td><td>5</td></tr> |
- | <tr><td>2mMdNTPs</th><td> | + | <tr><td>2mMdNTPs/(µl)</th><td>5</td></tr> |
- | <tr><td>25mM MgSO4</td><td> | + | <tr><td>25mM MgSO4/(µl)</td><td>2</td></tr> |
- | <tr><td>VF Primer</td><td>1. | + | <tr><td>VF Primer/(µl)</td><td>1.5</td></tr> |
- | <tr><td>VR Primer</td><td>1. | + | <tr><td>VR Primer/(µl)</td><td>1.5</td></tr> |
- | <tr><td>template</td><td>0. | + | <tr><td>template/(µl)</td><td>0.5</td></tr> |
- | <tr><td>KOD-plus</td><td> | + | <tr><td>KOD-plus/(µl)</td><td>1</td></tr> |
- | <tr><td>MilliQ</td><td>33. | + | <tr><td>MilliQ/(µl)</td><td>33.5</td></tr> |
- | <tr><td>TOTAL</td><td> | + | <tr><td>TOTAL/(µl)</td><td>50</td></tr> |
</table> | </table> | ||
<table class="note"> | <table class="note"> | ||
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
- | <tr><td>Pre Denature</td><td>94℃</td><td>2min</td><td> | + | <tr><td>Pre Denature</td><td>94℃</td><td>2min</td><td>1time</td></tr> |
- | <tr><td>Denature</td><td>94℃</td><td>15sec</td><td> | + | <tr><td>Denature</td><td>94℃</td><td>15sec</td><td>30cycle</td></tr> |
- | <tr><td>Annealing</td><td>55℃</td><td>30sec</td><td> | + | <tr><td>Annealing</td><td>55℃</td><td>30sec</td><td>30cycle</td></tr> |
- | <tr><td>Extension</td><td>68℃</td><td>1min</td><td> | + | <tr><td>Extension</td><td>68℃</td><td>1min</td><td>30cycle</td></tr> |
+ | |||
</table> | </table> | ||
Line 232: | Line 246: | ||
<tr><td>Product</td><td>80</td><td>1.91</td><td>1.78</td></tr> | <tr><td>Product</td><td>80</td><td>1.91</td><td>1.78</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0802" class="kyoto-jump"></a> |
+ | <h3>8/2</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Tatsui, Honda, Matsumoto, Yamauchi, Li, Tsujii, and Nakamura</span> | <span class="author">Tatsui, Honda, Matsumoto, Yamauchi, Li, Tsujii, and Nakamura</span> | ||
<table class="note"> | <table class="note"> | ||
Line 245: | Line 262: | ||
<tr><td>7/31 J23100(Pcon) Colony_6</td><td>180</td><td>1.90</td><td>1.37</td></tr> | <tr><td>7/31 J23100(Pcon) Colony_6</td><td>180</td><td>1.90</td><td>1.37</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0820" class="kyoto-jump"></a> |
+ | <h3>8/20</h3> | ||
+ | <h4>Transformation</h4> | ||
<span class="author">Honda</span> | <span class="author">Honda</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>7/31 BBa_E0240(RBS-GFD-DT)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>7/31 BBa_E0240(RBS-GFD-DT)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | ||
<tr><td>BBa_I732095</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_I732095</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0821" class="kyoto-jump"></a> |
+ | <h3>8/21</h3> | ||
+ | <h4>Colony PCR</h4> | ||
<span class="author">Shimazaki</span> | <span class="author">Shimazaki</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th> | + | <tr><th>NameⅠ</th></tr> |
<tr><td>8/20 BBa_I732095 Colony_1</td></tr> | <tr><td>8/20 BBa_I732095 Colony_1</td></tr> | ||
<tr><td>8/20 BBa_I732095 Colony_2</td></tr> | <tr><td>8/20 BBa_I732095 Colony_2</td></tr> | ||
Line 266: | Line 289: | ||
</table> | </table> | ||
- | < | + | <h4>Electrophoresis</h4> |
<span class="author">Honda</span> | <span class="author">Honda</span> | ||
<table class="note"> | <table class="note"> | ||
Line 277: | Line 300: | ||
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">Honda and Tatsui</span> | <span class="author">Honda and Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
Line 285: | Line 308: | ||
<tr><td>8/20 BBa_I732095 Colony_3</td><td>Plusgrow medium(CP)</td></tr> | <tr><td>8/20 BBa_I732095 Colony_3</td><td>Plusgrow medium(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0821" class="kyoto-jump"></a> |
+ | <h3>8/22</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Honda</span> | <span class="author">Honda</span> | ||
<table class="note"> | <table class="note"> | ||
Line 296: | Line 322: | ||
</table> | </table> | ||
- | < | + | <h4>Restriction Enzyme Digestion</h4> |
<span class="author">Nakamura</span> | <span class="author">Nakamura</span> | ||
<table class="note"> | <table class="note"> | ||
Line 305: | Line 331: | ||
</table> | </table> | ||
- | < | + | <h4>Transformation</h4> |
<span class="author">Tatsui and Yamauchi</span> | <span class="author">Tatsui and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_J04450(pSB3C5)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | <tr><td>BBa_J04450(pSB3C5)</td><td>2</td><td>20</td><td>22</td><td>LB(CP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0825" class="kyoto-jump"></a> |
+ | <h3>8/25</h3> | ||
+ | <h4>Transformation</h4> | ||
<span class="author">Tatsui, Kita and Li</span> | <span class="author">Tatsui, Kita and Li</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_J04450(pSB2K3)</td><td>2</td><td>20</td><td>22</td><td>LB(KAN)</td></tr> | <tr><td>BBa_J04450(pSB2K3)</td><td>2</td><td>20</td><td>22</td><td>LB(KAN)</td></tr> | ||
<tr><td>BBa_C0051(pSB1A2)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | <tr><td>BBa_C0051(pSB1A2)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | ||
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">Tatsui</span> | <span class="author">Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
Line 327: | Line 356: | ||
<tr><td>8/22 BBa_J04450(pSB3C5)</td><td>Plusgrow medium(CP)*5</td></tr> | <tr><td>8/22 BBa_J04450(pSB3C5)</td><td>Plusgrow medium(CP)*5</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0826" class="kyoto-jump"></a> |
+ | <h3>8/26</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Tsujii, Honda and Matsumoto</span> | <span class="author">Tsujii, Honda and Matsumoto</span> | ||
<table class="note"> | <table class="note"> | ||
Line 336: | Line 368: | ||
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">Tatsui, Matsumoto and Nakamura</span> | <span class="author">Tatsui, Matsumoto and Nakamura</span> | ||
<table class="note"> | <table class="note"> | ||
Line 343: | Line 375: | ||
<tr><td>8/25 BBa_J0051(pSB1A2)</td><td>Plusgrow medium(AMP)*2</td></tr> | <tr><td>8/25 BBa_J0051(pSB1A2)</td><td>Plusgrow medium(AMP)*2</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0827" class="kyoto-jump"></a> |
+ | <h3>8/27</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">No Name</span> | <span class="author">No Name</span> | ||
<table class="note"> | <table class="note"> | ||
Line 353: | Line 388: | ||
</table> | </table> | ||
- | < | + | <h4>Transformation</h4> |
<span class="author">Tatsui</span> | <span class="author">Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_J04450(pSB3T5)</td><td>2</td><td>20</td><td>22</td><td>LB(TET)</td></tr> | <tr><td>BBa_J04450(pSB3T5)</td><td>2</td><td>20</td><td>22</td><td>LB(TET)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0828" class="kyoto-jump"></a> |
+ | <h3>8/28</h3> | ||
+ | <h4>Liquid Culture</h4> | ||
<span class="author">Yamauchi</span> | <span class="author">Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
Line 367: | Line 405: | ||
<tr><td>8/27 BBa_J04450(pSB3T5)</td><td>Plusgrow medium(TET)</td></tr> | <tr><td>8/27 BBa_J04450(pSB3T5)</td><td>Plusgrow medium(TET)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0829" class="kyoto-jump"></a> |
+ | <h3>8/29</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Matsumoto</span> | <span class="author">Matsumoto</span> | ||
<table class="note"> | <table class="note"> | ||
Line 376: | Line 417: | ||
</table> | </table> | ||
- | < | + | <h4>Transformation</h4> |
<span class="author">Tatsui</span> | <span class="author">Tatsui</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
<tr><td>BBa_J04450(pSB4A5)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | <tr><td>BBa_J04450(pSB4A5)</td><td>2</td><td>20</td><td>22</td><td>LB(AMP)</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0901" class="kyoto-jump"></a> |
- | < | + | <h3>9/1</h3> |
+ | <h4>Colony PCR</h4> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>-</td></tr> | ||
+ | <tr><td>-</td></tr> | ||
+ | <tr><td>-</td></tr> | ||
+ | <tr><td>9/1 pSB4A5 Colony_1</td></tr> | ||
+ | <tr><td>9/1 pSB4A5 Colony_2</td></tr> | ||
+ | <tr><td>Negative Control</td></tr> | ||
+ | </table> | ||
- | < | + | <h4>Restriction Enzyme Digestion</h4> |
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
Line 403: | Line 455: | ||
</table> | </table> | ||
- | < | + | <h4>Liquid Culture</h4> |
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
Line 411: | Line 463: | ||
<tr><td>8/27 pSB3T5 Colony_1</td><td>Plusgrow medium(TET)*2</td></tr> | <tr><td>8/27 pSB3T5 Colony_1</td><td>Plusgrow medium(TET)*2</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0902" class="kyoto-jump"></a> |
+ | <h3>9/2</h3> | ||
+ | <h4>Miniprep</h4> | ||
<span class="author">Honda, Yamauchi and Li</span> | <span class="author">Honda, Yamauchi and Li</span> | ||
<table class="note"> | <table class="note"> | ||
Line 422: | Line 477: | ||
</table> | </table> | ||
- | < | + | <h4>Gel Extraction</h4> |
<span class="author">Matsumoto</span> | <span class="author">Matsumoto</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th>Lane</th><th> | + | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> |
<tr><td>1</td><td>9/1 pSB3T5 Colony_1 (Nega)</td><td>10</td></tr> | <tr><td>1</td><td>9/1 pSB3T5 Colony_1 (Nega)</td><td>10</td></tr> | ||
<tr><td>2</td><td>9/1 pSB3T5 Colony_1 (E+P)(Confirmation)</td><td>5</td></tr> | <tr><td>2</td><td>9/1 pSB3T5 Colony_1 (E+P)(Confirmation)</td><td>5</td></tr> | ||
Line 451: | Line 506: | ||
<tr><td>9</td><td>9/1 Pcon Colony_1 (Nega)</td><td>10</td></tr> | <tr><td>9</td><td>9/1 Pcon Colony_1 (Nega)</td><td>10</td></tr> | ||
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0903" class="kyoto-jump"></a> |
+ | <h3>9/3</h3> | ||
+ | <h4>Concentration Measurement</h4> | ||
<span class="author">Matsumoto, Yamauchi and Li</span> | <span class="author">Matsumoto, Yamauchi and Li</span> | ||
<table class="note"> | <table class="note"> | ||
Line 464: | Line 522: | ||
</table> | </table> | ||
- | < | + | <h4>Ligation</h4> |
<span class="author">No name</span> | <span class="author">No name</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> |
- | <tr><td>Pcon | + | <tr><td>Pcon</td><td>2.1</td><td>pSB1C3</td><td>1.5</td><td>1</td><td>5</td><td>0.4</td><td>10</td></tr> |
- | <tr><td> | + | <tr><td>-(Negative Control)</td><td>0</td><td>pSB1C3</td><td>1.5</td><td>1</td><td>5</td><td>2.5</td><td>10</td></tr> |
- | <tr><td>Pcon | + | <tr><td>Pcon</td><td>1.3</td><td>pSB2K3</td><td>2.5</td><td>1</td><td>5</td><td>0.2</td><td>10</td></tr> |
- | <tr><td> | + | <tr><td>-(Negative Control)</td><td>0</td><td>pSB2K3</td><td>2.5</td><td>1</td><td>5</td><td>1.5</td><td>10</td></tr> |
- | <tr><td>Pcon | + | <tr><td>Pcon</td><td>10</td><td>pSB3T5</td><td>2.3</td><td>1</td><td>5</td><td>0.7</td><td>10</td></tr> |
- | <tr><td> | + | <tr><td>-(Negative Control)</td><td>0</td><td>pSB3T5</td><td>2.3</td><td>1</td><td>5</td><td>1.7</td><td>10</td></tr> |
</table> | </table> | ||
- | < | + | <h4>Transformation</h4> |
<span class="author">Matsumoto</span> | <span class="author">Matsumoto</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th | + | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> |
- | <tr><td>Pcon+pSB1C3</td><td>3</td><td>15</td><td> | + | <tr><td>9/3 Ligation Pcon+pSB1C3</td><td>3</td><td>15</td><td>18</td><td>LB(CP)</td></tr> |
- | <tr><td>pSB1C3(Negative Control)</td><td>8</td><td>10</td><td> | + | <tr><td>9/3 Ligation pSB1C3(Negative Control)</td><td>8</td><td>10</td><td>18</td><td>LB(CP)</td></tr> |
- | <tr><td>Pcon+pSB2K3</td><td>3</td><td>15</td><td> | + | <tr><td>9/3 Ligation Pcon+pSB2K3</td><td>3</td><td>15</td><td>18</td><td>LB(KAN)</td></tr> |
- | <tr><td>pSB2K3(Negative Control)</td><td>8</td><td>10</td><td> | + | <tr><td>9/3 Ligation pSB2K3(Negative Control)</td><td>8</td><td>10</td><td>18</td><td>LB(KAN)</td></tr> |
- | <tr><td>Pcon+pSB3T5</td><td>3</td><td>15</td><td> | + | <tr><td>9/3 Ligation Pcon+pSB3T5</td><td>3</td><td>15</td><td>18</td><td>LB(TET)</td></tr> |
- | <tr><td>pSB3T5(Negative Control)</td><td>2</td><td>10</td><td> | + | <tr><td>9/3 Ligation pSB3T5(Negative Control)</td><td>2</td><td>10</td><td>12</td><td>LB(TET)</td></tr> |
</table> | </table> | ||
+ | </div> | ||
- | < | + | <div> |
- | < | + | <a name="0904" class="kyoto-jump"></a> |
+ | <h3>9/4</h3> | ||
+ | <h4>Colony PCR</h4> | ||
<span class="author">Honda and Yamauchi</span> | <span class="author">Honda and Yamauchi</span> | ||
<table class="note"> | <table class="note"> | ||
- | <tr><th> | + | <tr><th>NameⅠ</th><th>NameⅡ</th><th>NameⅢ</th><th>NameⅣ</th></tr> |
<tr><td>-</td><td>9/3 pSB1C3(Nega) Colony_7</td><td>9/3 Pcon+pSB3T5 Colony_5</td><td>9/3 Pcon+pSB2K3 Colony_1</td></tr> | <tr><td>-</td><td>9/3 pSB1C3(Nega) Colony_7</td><td>9/3 Pcon+pSB3T5 Colony_5</td><td>9/3 Pcon+pSB2K3 Colony_1</td></tr> | ||
<tr><td>-</td><td>9/3 pSB1C3(Nega) Colony_8</td><td>9/3 Pcon+pSB3T5 Colony_6</td><td>9/3 Pcon+pSB2K3 Colony_2</td></tr> | <tr><td>-</td><td>9/3 pSB1C3(Nega) Colony_8</td><td>9/3 Pcon+pSB3T5 Colony_6</td><td>9/3 Pcon+pSB2K3 Colony_2</td></tr> | ||
Line 503: | Line 564: | ||
</table> | </table> | ||
- | <tr><th> | + | <table class="note"> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><th>NameⅤ</th><th>NameⅥ</th><th>NameⅦ</th><th>NameⅧ</th></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 Pcon+pSB2K3 Colony_9</td><td>9/3 Pcon+pSB1C3 Colony_2</td><td>9/3 Pcon+pSB1C3 Colony_10</td><td>9/3 pSB1C3(Nega) Colony_8</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 Pcon+pSB2K3 Colony_10</td><td>9/3 Pcon+pSB1C3 Colony_3</td><td>9/3 pSB1C3(Nega) Colony_1</td><td>9/3 pSB1C3(Nega) Colony_9</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 pSB2K3(Nega) Colony_1</td><td>9/3 Pcon+pSB1C3 Colony_4</td><td>9/3 pSB1C3(Nega) Colony_2</td><td>9/3 pSB1C3(Nega) Colony_10</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 pSB2K3(Nega) Colony_2</td><td>9/3 Pcon+pSB1C3 Colony_5</td><td>9/3 pSB1C3(Nega) Colony_3</td><td>9/3 pSB1C3(Nega) Colony_11</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 pSB2K3(Nega) Colony_3</td><td>9/3 Pcon+pSB1C3 Colony_6</td><td>9/3 pSB1C3(Nega) Colony_4</td><td>-</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 pSB2K3(Nega) Colony_4</td><td>9/3 Pcon+pSB1C3 Colony_7</td><td>9/3 pSB1C3(Nega) Colony_5</td><td>-</td></tr> |
- | <tr><td></td><td></td><td></td><td></td></tr> | + | <tr><td>9/3 pSB2K3(Nega) Colony_5</td><td>9/3 Pcon+pSB1C3 Colony_8</td><td>9/3 pSB1C3(Nega) Colony_6</td><td>-</td></tr> |
+ | <tr><td>9/3 Pcon+pSB1C3 Colony_1</td><td>9/3 Pcon+pSB1C3 Colony_9</td><td>9/3 pSB1C3(Nega) Colony_7</td><td>-</td></tr> | ||
</table> | </table> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅨ</th><th>NameⅩ</th></tr> | ||
+ | <tr><td>9/3 Pcon+pSB1C3 Colony_11</td><td>8/22 Miniprep I732095 Colony_3</td></tr> | ||
+ | <tr><td>Negative Control</td><td>-</td></tr> | ||
+ | </table> | ||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">No name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Pst1/(µl)</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>8/27 Miniprep pSB2K3</td><td>2</td><td>1</td><td>1</td><td>3(H)</td><td>23</td><td>30</td></tr> | ||
+ | <tr><td>8/27 Miniprep pSB2K3(Nega)</td><td>1</td><td>0</td><td>0</td><td>1(H)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/2 Miniprep pSB3T5</td><td>10</td><td>1</td><td>1</td><td>3(H)</td><td>15</td><td>30</td></tr> | ||
+ | <tr><td>9/2 Miniprep pSB3T5(Nega)</td><td>3</td><td>0</td><td>0</td><td>1(H)</td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>9/2 Miniprep pSB4A5</td><td>10</td><td>1</td><td>1</td><td>3(H)</td><td>15</td><td>30</td></tr> | ||
+ | <tr><td>9/2 Miniprep pSB4A5(Nega)</td><td>3</td><td>0</td><td>0</td><td>1(H)</td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>8/22 Miniprep pSB1C3 Colony_2</td><td>2</td><td>1</td><td>1</td><td>1(H)</td><td>5</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <div> | ||
+ | <a name="0905" class="kyoto-jump"></a> | ||
+ | <h3>9/5</h3> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Honda and Matsumoto</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>10</td><td>9/4 pSB1C3(Nega) Colony_7</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>11</td><td>9/4 pSB1C3(Nega) Colony_8</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>12</td><td>9/4 pSB1C3(Nega) Colony_9</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB1C3(Nega) Colony_1</td><td>13</td><td>9/4 pSB1C3(Nega) Colony_10</td></tr> | ||
+ | <tr><td>5</td><td>9/4 pSB1C3(Nega) Colony_2</td><td>14</td><td>9/4 Pcon+pSB2K3 Colony_1</td></tr> | ||
+ | <tr><td>6</td><td>9/4 pSB1C3(Nega) Colony_3</td><td>15</td><td>9/4 Pcon+pSB2K3 Colony_2</td></tr> | ||
+ | <tr><td>7</td><td>9/4 pSB1C3(Nega) Colony_4</td><td>16</td><td>9/4 Pcon+pSB2K3 Colony_3</td></tr> | ||
+ | <tr><td>8</td><td>9/4 pSB1C3(Nega) Colony_5</td><td>17</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>9</td><td>9/4 pSB1C3(Nega) Colony_6</td></tr> | ||
+ | </table> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅡ</td><th>Lane</th><th>Colony PCR ProductsⅡ</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>10</td><td>9/4 pSB3T5(Nega) Colony_2</td></tr> | ||
+ | <tr><td>2</td><td>9/4 Pcon+pSB2K3 Colony_4</td><td>11</td><td>9/4 Pcon+pSB2K3 Colony_1</td></tr> | ||
+ | <tr><td>3</td><td>9/4 Pcon+pSB2K3 Colony_5</td><td>12</td><td>9/4 Pcon+pSB2K3 Colony_2</td></tr> | ||
+ | <tr><td>4</td><td>9/4 Pcon+pSB2K3 Colony_6</td><td>13</td><td>9/4 Pcon+pSB2K3 Colony_3</td></tr> | ||
+ | <tr><td>5</td><td>9/4 Pcon+pSB2K3 Colony_7</td><td>14</td><td>9/4 Pcon+pSB2K3 Colony_4</td></tr> | ||
+ | <tr><td>6</td><td>9/4 Pcon+pSB2K3 Colony_8</td><td>15</td><td>9/4 Pcon+pSB2K3 Colony_5</td></tr> | ||
+ | <tr><td>7</td><td>9/4 Pcon+pSB2K3 Colony_9</td><td>16</td><td>9/4 Pcon+pSB2K3 Colony_6</td></tr> | ||
+ | <tr><td>8</td><td>9/4 Pcon+pSB3T5 Colony_10</td><td>17</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>9</td><td>9/4 pSB3T5(Nega) Colony_1</td></tr> | ||
+ | </table> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅢ</td><th>Lane</th><th>Colony PCR ProductsⅢ</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>10</td><td>9/4 pSB2K3(Nega) Colony_5</td></tr> | ||
+ | <tr><td>2</td><td>9/4 Pcon+pSB2K3 Colony_7</td><td>11</td><td>9/4 pSB1C3(Nega) Colony_1</td></tr> | ||
+ | <tr><td>3</td><td>9/4 Pcon+pSB2K3 Colony_8</td><td>12</td><td>9/4 pSB1C3(Nega) Colony_2</td></tr> | ||
+ | <tr><td>4</td><td>9/4 Pcon+pSB2K3 Colony_9</td><td>13</td><td>9/4 pSB1C3(Nega) Colony_3</td></tr> | ||
+ | <tr><td>5</td><td>9/4 Pcon+pSB2K3 Colony_10</td><td>14</td><td>9/4 pSB1C3(Nega) Colony_4</td></tr> | ||
+ | <tr><td>6</td><td>9/4 pSB2K3(Nega) Colony_1</td><td>15</td><td>9/4 pSB1C3(Nega) Colony_5</td></tr> | ||
+ | <tr><td>7</td><td>9/4 pSB2K3(Nega) Colony_2</td><td>16</td><td>9/4 pSB1C3(Nega) Colony_6</td></tr> | ||
+ | <tr><td>8</td><td>9/4 pSB2K3(Nega) Colony_3</td><td>17</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>9</td><td>9/4 pSB2K3(Nega) Colony_4</td></tr> | ||
+ | </table> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅣ</td><th>Lane</th><th>Colony PCR ProductsⅣ</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>10</td><td>9/4 Pcon+pSB1C3 Colony_5</td></tr> | ||
+ | <tr><td>2</td><td>9/4 pSB1C3(Nega) Colony_7</td><td>11</td><td>9/4 Pcon+pSB1C3 Colony_6</td></tr> | ||
+ | <tr><td>3</td><td>9/4 pSB1C3(Nega) Colony_8</td><td>12</td><td>9/4 Pcon+pSB1C3 Colony_7</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB1C3(Nega) Colony_9</td><td>13</td><td>9/4 Pcon+pSB1C3 Colony_8</td></tr> | ||
+ | <tr><td>5</td><td>9/4 pSB1C3(Nega) Colony_10</td><td>14</td><td>9/4 Pcon+pSB1C3 Colony_9</td></tr> | ||
+ | <tr><td>6</td><td>9/4 Pcon+pSB1C3 Colony_1</td><td>15</td><td>9/4 Pcon+pSB1C3 Colony_10</td></tr> | ||
+ | <tr><td>7</td><td>9/4 Pcon+pSB1C3 Colony_2</td><td>16</td><td>8/22 Miniprep BBa_I732095 Colony_3</td></tr> | ||
+ | <tr><td>8</td><td>9/4 Pcon+pSB1C3 Colony_3</td><td>17</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>9</td><td>9/4 Pcon+pSB1C3 Colony_4</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅤ</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>2</td><td>9/4 Pcon+pSB1C3 Colony_11</td></tr> | ||
+ | <tr><td>3</td><td>9/4 Negative Control</td></tr> | ||
+ | <tr><td>4</td><td>8/22 Miniprep BBa_I732095 Colony_3</td></tr> | ||
+ | <tr><td>5</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>9/4 pSB2K3(E+P)</td><td>5</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB2K3(E+P)</td><td>25</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>9/4 pSB2K3(Nega)</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>9/4 pSB3T5(E+P)</td><td>5</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB3T5(E+P)</td><td>25</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>9/4 pSB3T5(Nega)</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅢ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>9/4 pSB4A5(E+P)</td><td>5</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB4A5(E+P)</td><td>25</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>9/4 pSB4A5(Nega)</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅣ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/4 pSB1C3(E+P)</td><td>10</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/4 pSB2K3(E+P)</td><td>36</td><td>1.25</td><td>0.24</td></tr> | ||
+ | <tr><td>9/4 pSB3T5(E+P)</td><td>10</td><td>1.00</td><td>-/td></tr> | ||
+ | <tr><td>9/4 pSB4A5(E+P)</td><td>40</td><td>-</td><td>0.01</td></tr> | ||
+ | <tr><td>9/4 pSB1C3(E+P)</td><td>75</td><td>1.35</td><td>0.14</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0908" class="kyoto-jump"></a> | ||
+ | <h3>9/8</h3> | ||
+ | <h4>Cloning PCR</h4> | ||
+ | <span class="author">Honda and Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>mamB</th><th>mamQ</th><th>mamL</th></tr> | ||
+ | <tr><td>2×KAPA HiFi Hotstart Ready Mix/(µl)</td><td>12.5</td><td>12.5</td><td>12.5</td></tr> | ||
+ | <tr><td>Fw Primer/(µl)</td><td>1.5(mamB)</td><td>1.5(mamQ)</td><td>1.5(mamL)</td></tr> | ||
+ | <tr><td>Rv Primer/(µl)</td><td>1.5(mamB)</td><td>1.5(mamQ)</td><td>1.5(mamL)</td></tr> | ||
+ | <tr><td>AMB-1 Genome/(µl)</td><td>1</td><td>1</td><td>1</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>10</td><td>10</td><td>10</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>25</td><td>25</td><td>25</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>20sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>65℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>5min</td><td>25cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>Pcon</td><td>1</td><td>pSB3T5</td><td>10</td><td>1</td><td>11</td><td>0</td><td>22</td></tr> | ||
+ | <tr><td>-(Negative Control)</td><td>0</td><td>pSB1C3</td><td>3</td><td>0</td><td>3</td><td>0</td><td>6</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Cloning PCR Products</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>2</td><td>9/8 Cloning PCR (AMB-1 mamB)</td></tr> | ||
+ | <tr><td>3</td><td>9/8 Cloning PCR (AMB-1 mamQ)</td></tr> | ||
+ | <tr><td>4</td><td>9/8 Cloning PCR (AMB-1 mamL)</td></tr> | ||
+ | <tr><td>5</td><td>1kb ladder</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/8 Ligation Pcon+pSB3T5</td><td>3</td><td>30</td><td>33</td><td>LB(TET)</td></tr> | ||
+ | <tr><td>9/8 Ligation pSB3T5(Negative Control)</td><td>3</td><td>30</td><td>33</td><td>LB(TET)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">No name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/3 Transformation Pcon+pSB1C3 Colony_8</td><td>Plusgrow medium(CP)*2</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0909" class="kyoto-jump"></a> | ||
+ | <h3>9/9</h3> | ||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/8 Cloning PCR (AMB-1 mamB)</td><td>165</td><td>1.54</td><td>1.57</td></tr> | ||
+ | <tr><td>9/8 Cloning PCR (AMB-1 mamQ)</td><td>250</td><td>1.69</td><td>1.92</td></tr> | ||
+ | <tr><td>9/8 Cloning PCR (AMB-1 mamL)</td><td>190</td><td>1.56</td><td>1.79</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/8 Liquid Culture Pcon+pSB1C3</td><td>90</td><td>1.65</td><td>1.17</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Honda and Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>-</td></tr> | ||
+ | <tr><td>9/8 Transformation Pcon+pSB3T5 Colony_1</td></tr> | ||
+ | <tr><td>9/8 Transformation Pcon+pSB3T5 Colony_2</td></tr> | ||
+ | <tr><td>9/8 Transformation Pcon+pSB3T5 Colony_3</td></tr> | ||
+ | <tr><td>9/8 Transformation Pcon+pSB3T5 Colony_4</td></tr> | ||
+ | <tr><td>9/8 Transformation Pcon+pSB3T5 Colony_5</td></tr> | ||
+ | <tr><td>9/8 Transformation pSB3T5(Nega) Colony_1</td></tr> | ||
+ | <tr><td>Negative control</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Honda and Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Cloning PCR Products</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>2</td><td>9/8 Colony PCR Pcon+pSB3T5 Colony_1</td></tr> | ||
+ | <tr><td>3</td><td>9/8 Colony PCR Pcon+pSB3T5 Colony_2</td></tr> | ||
+ | <tr><td>4</td><td>9/8 Colony PCR Pcon+pSB3T5 Colony_3</td></tr> | ||
+ | <tr><td>5</td><td>9/8 Colony PCR Pcon+pSB3T5 Colony_4</td></tr> | ||
+ | <tr><td>6</td><td>9/8 Colony PCR Pcon+pSB3T5 Colony_5</td></tr> | ||
+ | <tr><td>7</td><td>9/8 Colony PCR pSB3T5(Nega) Colony_1</td></tr> | ||
+ | <tr><td>8</td><td>9/8 Colony PCR Nega</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">No name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Pst1/(µl)</th><th>Spe1/(µl)</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/9 Miniprep Pcon+pSB1C3</td><td>22</td><td>1</td><td>1</td><td>3(H)</td><td>3</td><td>30</td></tr> | ||
+ | <tr><td>9/9 Miniprep Pcon+pSB1C3(Nega)</td><td>1</td><td>0</td><td>0</td><td>1(H)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>8/2 Miniprep Pcon Colony_4</td><td>14</td><td>1</td><td>1</td><td>3(H)</td><td>11</td><td>30</td></tr> | ||
+ | <tr><td>8/2 Miniprep Pcon Colony_4(Nega)</td><td>1</td><td>0</td><td>0</td><td>1(H)</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0910" class="kyoto-jump"></a> | ||
+ | <h3>9/10</h3> | ||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Tatsui and Yamaura</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/10 Digestion Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>9/10 Digestion Pcon+pSB1C3(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>Pcon(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>Pcon(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>Pcon(X+P)</td><td>70</td><td>1.40</td><td>0.13</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>E+X+RBS+mamB+S</th><th>X+RBS+mamL+His+S+P</th><th>X+RBS+mamQ+His+S+P</th></tr> | ||
+ | <tr><td>2×KAPA HiFi Hotstart Ready Mix/(µl)</td><td>12.5</td><td>12.5</td><td>12.5</td></tr> | ||
+ | <tr><td>Fw Primer/(µl)</td><td>0.75(E+X+RBS+mamB)</td><td>0.75(X+RBS+mamL)</td><td>0.75(X+RBS+mamQ)</td></tr> | ||
+ | <tr><td>Rv Primer/(µl)</td><td>0.75(S+mamB)</td><td>0.75(P+S+His+mamL)</td><td>0.75(P+S+His+mamQ)</td></tr> | ||
+ | <tr><td>9/9 DNA Purification Product/(µl)</td><td>Trace</td><td>Trace</td><td>Trace</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>11</td><td>11</td><td>11</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>25</td><td>25</td><td>25</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>20sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>60℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>12℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Cloning PCR Products</td></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>2</td><td>9/10 PCR E+X+RBS+mamB+S(922bp)</td></tr> | ||
+ | <tr><td>3</td><td>9/10 PCR X+RBS+mamL+His+S+P(340bp)</td></tr> | ||
+ | <tr><td>4</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>6</td><td>9/10 PCR X+RBS+mamQ+His+S+P(953bp)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Honda and Yamaura</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/10 PCR E+X+RBS+mamB+S</td><td>200</td><td>1.84</td><td>2.15</td></tr> | ||
+ | <tr><td>9/10 PCR X+RBS+mamL+His+S+P</td><td>120</td><td>1.69</td><td>1.84</td></tr> | ||
+ | <tr><td>9/10 PCR X+RBS+mamQ+His+S+P</td><td>200</td><td>1.70</td><td>2.16</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Shimizu</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Pst1/(µl)</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/10 PCR E+X+RBS+mamB+S</td><td>10</td><td>1</td><td>1</td><td>3(H)</td><td>15</td><td>30</td></tr> | ||
+ | <tr><td>9/10 PCR X+RBS+mamL+His+S+P</td><td>16.7</td><td>1</td><td>1</td><td>3(H)</td><td>8.3</td><td>30</td></tr> | ||
+ | <tr><td>9/10 PCR X+RBS+mamQ+His+S+P</td><td>10</td><td>1</td><td>1</td><td>3(H)</td><td>15</td><td>30</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Tatsui and Murada</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>9/10 DNA Purification mamQ</td><td>1</td><td>YCplac111</td><td>1</td><td>1</td><td>5</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>9/10 DNA Purification mamL</td><td>1</td><td>YCplac111</td><td>1</td><td>1</td><td>5</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>9/10 DNA Purification mamB</td><td>1</td><td>YCplac111</td><td>1</td><td>1</td><td>5</td><td>2</td><td>10</td></tr> | ||
+ | <tr><td>Control</td><td>0</td><td>YCplac111</td><td>1</td><td>1</td><td>5</td><td>2</td><td>9</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui and Murada</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/10 Ligation mamQ+YCplac111</td><td>-</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/10 Ligation mamL+YCplac111</td><td>-</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/10 Ligation mamB+YCplac111</td><td>-</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0911" class="kyoto-jump"></a> | ||
+ | <h3>9/11</h3> | ||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/10 Digestion mamB(X+P)</td><td>65</td><td>1.68</td><td>0.51</td></tr> | ||
+ | <tr><td>9/10 Digestion mamL(X+P)</td><td>30</td><td>1.95</td><td>0.81</td></tr> | ||
+ | <tr><td>9/10 Digestion mamQ(X+P)</td><td>60</td><td>1.65</td><td>1.22</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Murada</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Yamauchi</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/11 Ligation mamL</td><td>2</td><td>10</td><td>12</td><td>-</td></tr> | ||
+ | <tr><td>9/11 Ligation mamQ</td><td>1</td><td>5</td><td>6</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/8 Master Pcon+pSB1C3 Colony_3</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>9/10 Transformation mamL+YCplac111</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/10 Transformation mamQ+YCplac111</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0912" class="kyoto-jump"></a> | ||
+ | <h3>9/12</h3> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Yamaura</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Yamaura</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR Products</td></tr> | ||
+ | <tr><td></td><td></td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/11 Liquid Culture Pcon+pSB1C3</td><td>110</td><td>1.83</td><td>2.63</td></tr> | ||
+ | <tr><td>9/11 Liquid Culture mamL+YCplac111</td><td>300</td><td>1.75</td><td>2.38</td></tr> | ||
+ | <tr><td>9/11 Liquid Culture mamQ+YCplac111</td><td>160</td><td>1.81</td><td>2.37</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Yasuda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Pst1/(µl)</th><th>Spe1/(µl)</th><th>Buffur/(µl)</th><th>BSA</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/12 Miniprep mamL+YCplac111</td><td>6.7</td><td>1</td><td>1</td><td>0</td><td>3(H)</td><td>3</td><td>15.3</td><td>30</td></tr> | ||
+ | <tr><td>9/12 Miniprep mamQ+YCplac111</td><td>12.5</td><td>1</td><td>1</td><td>0</td><td>3(H)</td><td>3</td><td>9.5</td><td>30</td></tr> | ||
+ | <tr><td>9/12 Miniprep Pcon+pSB1C3</td><td>18.1</td><td>0</td><td>1</td><td>1</td><td>3(H)</td><td>0</td><td>6.9</td><td>30</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>9/12 Digestion mamB(E+S)</td><td>3</td><td>9/8 Digestion pSB1C3(E+S)</td><td>1</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>9/10 mamB</td><td>0.5</td><td>YCplac111</td><td>1</td><td>1</td><td>5</td><td>2.5</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>mamB(E+S)</td><td>50</td><td>1.75</td><td>2.04</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/12 Ligation mamB+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/12 Ligation mamB+YCplac111</td><td>1</td><td>10</td><td>11</td><td>LB(AMP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_1</td><td>9/11 Transformation mamL+pSB1A2 Colony_9</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_2</td><td>9/11 Transformation mamL+pSB1A2 Colony_10</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_3</td><td>9/11 Transformation mamQ+pSB1A2 Colony_1</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_4</td><td>9/11 Transformation mamQ+pSB1A2 Colony_2</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_5</td><td>9/11 Transformation mamQ+pSB1A2 Colony_3</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_6</td><td>9/11 Transformation mamQ+pSB1A2 Colony_4</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_7</td><td>9/11 Transformation mamQ+pSB1A2 Colony_5</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Colony_8</td><td>9/11 Transformation mamQ+pSB1A2 Colony_6</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>9/12 mamL+pSB1A2 Colony_1</td><td>10</td><td>9/12 mamL+pSB1A2 Colony_9</td></tr> | ||
+ | <tr><td>2</td><td>9/12 mamL+pSB1A2 Colony_2</td><td>11</td><td>9/12 mamL+pSB1A2 Colony_10</td></tr> | ||
+ | <tr><td>3</td><td>9/12 mamL+pSB1A2 Colony_3</td><td>12</td><td>9/12 mamQ+pSB1A2 Colony_1</td></tr> | ||
+ | <tr><td>4</td><td>9/12 mamL+pSB1A2 Colony_4</td><td>13</td><td>9/12 mamQ+pSB1A2 Colony_2</td></tr> | ||
+ | <tr><td>5</td><td>9/12 mamL+pSB1A2 Colony_5</td><td>14</td><td>9/12 mamQ+pSB1A2 Colony_3</td></tr> | ||
+ | <tr><td>6</td><td>9/12 mamL+pSB1A2 Colony_6</td><td>15</td><td>9/12 mamQ+pSB1A2 Colony_4</td></tr> | ||
+ | <tr><td>7</td><td>9/12 mamL+pSB1A2 Colony_7</td><td>16</td><td>9/12 mamQ+pSB1A2 Colony_5</td></tr> | ||
+ | <tr><td>8</td><td>9/12 mamL+pSB1A2 Colony_8</td><td>17</td><td>9/12 mamQ+pSB1A2 Colony_6</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Green_1</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Green_2</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Green_3</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Green_4</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Green_5</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Black_7</td></tr> | ||
+ | <tr><td>9/11 Transformation mamL+pSB1A2 Black_8</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Black_1</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>9/12 mamL+pSB1A2 Green_1</td></tr> | ||
+ | <tr><td>2</td><td>9/12 mamL+pSB1A2 Green_2</td></tr> | ||
+ | <tr><td>3</td><td>9/12 mamL+pSB1A2 Green_3</td></tr> | ||
+ | <tr><td>4</td><td>9/12 mamL+pSB1A2 Green_4</td></tr> | ||
+ | <tr><td>5</td><td>9/12 mamL+pSB1A2 Green_5</td></tr> | ||
+ | <tr><td>6</td><td>9/12 mamL+pSB1A2 Black_7</td></tr> | ||
+ | <tr><td>7</td><td>9/12 mamL+pSB1A2 Black_8</td></tr> | ||
+ | <tr><td>8</td><td>9/12 mamQ+pSB1A2 Black_1</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Yamauchi</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_1</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_2</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_3</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_4</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_5</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | <tr><td>9/11 Transformation mamQ+pSB1A2 Colony_6</td><td>Plusgrow medium(AMP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0913" class="kyoto-jump"></a> | ||
+ | <h3>9/13</h3> | ||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_1 Error</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_2 Error</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_3 Error</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_4</td><td>80</td><td>2.02</td><td>2.76</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_5</td><td>70</td><td>2.13</td><td>3.41</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture mamQ+pSB1A2 Colony_6</td><td>110</td><td>1.96</td><td>1.70</td></tr> | ||
+ | <tr><td>9/12 Liquid Culture Pcon+pSB1C3</td><td>110</td><td>1.96</td><td>1.70</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR Labeling and Sequence</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/13 mamQ+pSB1A2 Colony_4</th><th>9/13 mamQ+pSB1A2 Colony_5</th><th>9/13 mamQ+pSB1A2 Colony_6</th><th>Pcon+pSB1A2</th><th>9/13 mamQ+pSB1A2 Colony_4</th><th>9/13 mamQ+pSB1A2 Colony_5</th><th>9/13 mamQ+pSB1A2 Colony_6</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>5</td><td>4</td><td>6</td><td>4</td><td>5</td><td>6</td><td>4</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.5(VF)</td><td>0.5(VF)</td><td>0.5(VF)</td><td>0.5(VF)</td><td>0.5(VR)</td><td>0.5(VR)</td><td>0.5(VR)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>2.75</td><td>1.75</td><td>3.75</td><td>3.75</td><td>2.75</td><td>1.75</td><td>3.75</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/12 mamQ+YCplac111</th><th>9/12 mamL+YCplac111</th><th>9/12 mamQ+YCplac111</th><th>9/12 mamL+YCplac111</th><th>9/12 mamQ+YCplac111</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>3</td><td>1.5</td><td>3</td><td>1.5</td><td>3</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.5(M13F)</td><td>0.5(M13F)</td><td>0.5(M13R)</td><td>0.5(M13R)</td><td>0.5(seqpLQB-2)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>4.75</td><td>6.25</td><td>4.75</td><td>6.25</td><td>4.75</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/12 Digestion mamQ+YCpla111(X+P)(992bp)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>9/12 Digestion mamL+YCpla111(X+P)(340bp)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>9/12 Digestion Pcon+pSB1C3(Nega)(5600bp)</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>9/12 Digestion Pcon+pSB1C3(S+P)(2070bp)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/12 Digestion mamL+YCpla111(X+P)</td><td>10</td><td>1.00</td><td>0.70</td></tr> | ||
+ | <tr><td>9/12 Digestion Pcon+pSB1C3(S+P)</td><td>150</td><td>1.25</td><td>0.71</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>EcoR1/(µl)</th><th>Buffur/(µl)</th><th>BSA</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/13 Miniprep mamQ+pSB1A2 Colony_4</td><td>12.5</td><td>0.5</td><td>0</td><td>0.5</td><td>0</td><td>1.7(M)</td><td>1.6</td><td>0</td><td>16.8</td></tr> | ||
+ | <tr><td>9/13 Miniprep mamQ+pSB1A2 Colony_5</td><td>14.3</td><td>0.5</td><td>0</td><td>0.5</td><td>0</td><td>1.9(M)</td><td>1.86</td><td>0</td><td>19.06</td></tr> | ||
+ | <tr><td>9/13 Miniprep mamQ+pSB1A2 Colony_6</td><td>9.1</td><td>0.5</td><td>0</td><td>0.5</td><td>0</td><td>1.5(M)</td><td>1.5</td><td>1.9</td><td>15</td></tr> | ||
+ | <tr><td>9/13 Miniprep mamQ+pSB1A2 Colony_6(Nega)</td><td>3</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0.5(M)</td><td>0.5</td><td>1</td><td>5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Yasuda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>9/13 Gel Extraction mamL(X+P)</td><td>3</td><td>Pcon+pSB1C3(S+P)</td><td>1</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/12 Liquid Culture Pcon+pSB1C3</td><td>240</td><td>1.78</td><td>1.59</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0914" class="kyoto-jump"></a> | ||
+ | <h3>9/14</h3> | ||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>3</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/13 mamQ Colony_4(X+P)</td><td>16.8</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>1kb ladder</td><td>3</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>9/13 mamQ Colony_5(X+P)</td><td>19.06</td></tr> | ||
+ | <tr><td>8</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>9/13 mamQ Colony_6(Nega)</td><td>5</td></tr> | ||
+ | <tr><td>10</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>9/13 mamQ Colony_6(X+P)</td><td>15</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>mamB(E+S)</td><td>4</td><td>pSB1C3(E+S)</td><td>3</td><td>1</td><td>8</td><td>0</td><td>16</td></tr> | ||
+ | <tr><td>mamL(X+P)</td><td>3.3</td><td>pSB1C3(E+S)</td><td>0.7</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>E+X+RBS+mamB+S</th></tr> | ||
+ | <tr><td>2×KAPA HiFi Hotstart Ready Mix/(µl)</td><td>12.5</td></tr> | ||
+ | <tr><td>Fw Primer/(µl)</td><td>0.75(E+X+RBS+mamB)</td>/tr> | ||
+ | <tr><td>Rv Primer/(µl)</td><td>0.75(S+mamB)</td></tr> | ||
+ | <tr><td>9/9 DNA Purification Product/(µl)</td><td>Trace</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>11</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>25</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>20sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>60℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>12℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/14 Ligation Pcon+mamL+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/14 Ligation Pcon+mamL+pSB1C3(Nega)</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/14 Ligation mamB+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0915" class="kyoto-jump"></a> | ||
+ | <h3>9/15</h3> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_1</td><td>9/14 Transformation mamB+pSB1C3 Colony_9</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_2</td><td>9/14 Transformation mamB+pSB1C3 Colony_10</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_3</td><td>9/14 Transformation mamB+pSB1C3 Colony_11</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_4</td><td>9/14 Transformation mamB+pSB1C3 Colony_12</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_5</td><td>9/14 Transformation mamB+pSB1C3 Colony_13</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_6</td><td>9/14 Transformation mamB+pSB1C3 Colony_14</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_7</td><td>9/14 Transformation mamB+pSB1C3 Colony_15</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_8</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>9/14 mamB+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>2</td><td>9/14 mamB+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>3</td><td>9/14 mamB+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>4</td><td>9/14 mamB+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>5</td><td>9/14 mamB+pSB1C3 Colony_5</td></tr> | ||
+ | <tr><td>6</td><td>9/14 mamB+pSB1C3 Colony_6</td></tr> | ||
+ | <tr><td>7</td><td>9/14 mamB+pSB1C3 Colony_7</td></tr> | ||
+ | <tr><td>8</td><td>9/14 mamB+pSB1C3 Colony_8</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>10</td><td>9/14 mamB+pSB1C3 Colony_9</td></tr> | ||
+ | <tr><td>11</td><td>9/14 mamB+pSB1C3 Colony_10</td></tr> | ||
+ | <tr><td>12</td><td>9/14 mamB+pSB1C3 Colony_11</td></tr> | ||
+ | <tr><td>13</td><td>9/14 mamB+pSB1C3 Colony_12</td></tr> | ||
+ | <tr><td>14</td><td>9/14 mamB+pSB1C3 Colony_13</td></tr> | ||
+ | <tr><td>15</td><td>9/14 mamB+pSB1C3 Colony_14</td></tr> | ||
+ | <tr><td>16</td><td>9/14 mamB+pSB1C3 Colony_15</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>9/14 Transformation Pcon+mamL+SB1C3 Colony_1</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_9</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>mamB+YCplac111</td><td>1</td><td>10</td><td>11</td><td>LB(AMP)</td></tr> | ||
+ | <tr><td>Pcon+mamL+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>mamB+pSB1C3 Colony_9</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamB+pSB1C3 Colony_10</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamB+pSB1C3 Colony_11</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_1</td><td>170</td><td>1.74</td><td>1.41</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_2</td><td>140</td><td>1.95</td><td>1.43</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_3</td><td>135</td><td>1.95</td><td>1.60</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_4</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_5</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamL+pSB1A2 Colony_6</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/14 Transformation Pcon+mamL+pSB1C3 Colony_1</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_9</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_10</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>9/14 Transformation mamB+pSB1C3 Colony_11</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Li</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>MilliQ/(µl)</th><th>Buffur/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/15 DNA Purification mamB</td><td>25</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0</td><td>3(H)</td><td>30</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_1</td><td>11.8</td><td>0</td><td>1</td><td>0</td><td>1</td><td>3</td><td>10.2</td><td>3(M)</td><td>30</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_1(Nega)</td><td>0.6</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8.4</td><td>1(M)</td><td>10</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_2</td><td>14.3</td><td>0</td><td>1</td><td>0</td><td>1</td><td>3</td><td>7.7</td><td>3(M)</td><td>30</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_2(Nega)</td><td>0.7</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8.3</td><td>1(M)</td><td>10</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_3</td><td>14.8</td><td>0</td><td>1</td><td>0</td><td>1</td><td>3</td><td>7.2</td><td>3(M)</td><td>30</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_3(Nega)</td><td>0.7</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8.3</td><td>1(M)</td><td>10</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_4</td><td>13.3</td><td>0</td><td>1</td><td>0</td><td>1</td><td>3</td><td>8.7</td><td>3(M)</td><td>30</td></tr> | ||
+ | <tr><td>9/15 Mniprep mamL+pSB1A2 Colony_4(Nega)</td><td>0.7</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>8.3</td><td>1(M)</td><td>10</td></tr> | ||
+ | <tr><td>9/13 Pcon+pSB1C3</td><td>20</td><td>0</td><td>0</td><td>1</td><td>1</td><td>0</td><td>5</td><td>3(H)</td><td>30</td></tr> | ||
+ | <tr><td>9/13 Pcon+pSB1C3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>6</td><td>3(H)</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>mamB Colony_10</th><th>mamB Colony_11</th></tr> | ||
+ | <tr><td>2×PrimeSTAR Max Premix/(µl)</td><td>25</td><td>25</td></tr> | ||
+ | <tr><td>Fw mamB Mutation Primer/(µl)</td><td>1</td><td>1</td></tr> | ||
+ | <tr><td>Rv mamB Mutation Primer/(µl)</td><td>1</td><td>1</td></tr> | ||
+ | <tr><td>9/15 Miniprep mamB+pSB1C3/(µl)</td><td>Colony_10(Trace)</td><td>Colony_11(Trace)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>23</td><td>23</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>50</td><td>50</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>15sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>15sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>12℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0916" class="kyoto-jump"></a> | ||
+ | <h3>9/16</h3> | ||
+ | <h4>PCR Labeling and Sequence</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/15 Pcon+mamL+pSB1C3</th><th>9/15 mamL+pSB1A2 Colony_1</th><th>9/15 mamL+pSB1A2 Colony_2</th><th>9/15 mamL+pSB1A2 Colony_3</th><th>9/15 mamL+pSB1A2 Colony_4</th><th>9/15 mamB+pSB1C3 Colony_9</th><th>9/15 mamB+pSB1C3 Colony_10</th><th>9/15 mamB+pSB1C3 Colony_11</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>1.8</td><td>2.35</td><td>2.9</td><td>3.0</td><td>3.0</td><td>1.14</td><td>1.2</td><td>1.2</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer(VF)/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>5.95</td><td>5.4</td><td>4.85</td><td>4.75</td><td>4.75</td><td>6.61</td><td>6.55</td><td>6.55</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/15 Pcon+mamL+pSB1C3</th><th>9/15 mamL+pSB1A2 Colony_1</th><th>9/15 mamL+pSB1A2 Colony_2</th><th>9/15 mamL+pSB1A2 Colony_3</th><th>9/15 mamB+pSB1C3 Colony_9</th><th>9/15 mamB+pSB1C3 Colony_10</th><th>9/15 mamB+pSB1C3 Colony_11</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>1.8</td><td>2.35</td><td>2.9</td><td>3.0</td><td>1.14</td><td>1.2</td><td>1.2</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer(VR)/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>5.95</td><td>5.4</td><td>4.85</td><td>4.75</td><td>6.61</td><td>6.55</td><td>6.55</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>96℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>96℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>5sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>4min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>1min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/15 mamL Colony_1(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>9/15 mamL Colony_2(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>9/15 mamL Colony_2(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>9/15 mamL Colony_3(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>9/15 mamL Colony_3(X+P)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion ProductⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/15 mamQ(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>9/15 mamQ(Nega)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>mamL Colony_1</td><td>45</td><td>1.69</td><td>0.60</td></tr> | ||
+ | <tr><td>mamL Colony_2</td><td>60</td><td>1.33</td><td>0.70</td></tr> | ||
+ | <tr><td>mamL Colony_3</td><td>40</td><td>1.76</td><td>0.08</td></tr> | ||
+ | <tr><td>mamQ</td><td>65</td><td>1.35</td><td>0.83</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Dephosphorylation</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th></tr> | ||
+ | <tr><td>9/15 Digestion Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>9/15 Gel Extraction Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/15 Mutation PCR mamB+pSB1C3 Colony_10</td><td>225</td><td>1.64</td><td>1.74</td></tr> | ||
+ | <tr><td>9/15 Mutation PCR mamB+pSB1C3 Colony_11</td><td>205</td><td>1.59</td><td>1.76</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Yamauchi</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/15 Digestion Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>9/15 Gel Extraction Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Honda and Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/16 DNA Purification mamB+pSB1C3 Colony_10</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/16 DNA Purification mamB+pSB1C3 Colony_11</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>MilliQ/(µl)</th><th>Buffur/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/15 mamQ+pSB1A2 Colony_4</td><td>26.7</td><td>0</td><td>2</td><td>0</td><td>2</td><td>6</td><td>17.3</td><td>6(M)</td><td>60</td></tr> | ||
+ | <tr><td>9/15 mamQ+pSB1A2 Colony_4(Nega)</td><td>0.7</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>7.3</td><td>1(M)</td><td>10</td></tr> | ||
+ | <tr><td>9/15 Pcon+mamL+pSB1C3</td><td>15</td><td>0</td><td>0</td><td>2</td><td>2</td><td>0</td><td>35</td><td>6(H)</td><td>60</td></tr> | ||
+ | <tr><td>9/15 Pcon+mamL+pSB1C3(Nega)</td><td>0.5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>8.5</td><td>1(H)</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>E+Pcon+X+RBS+mamB+His+S(*2)</th></tr> | ||
+ | <tr><td>2×KAPA HiFi Hotstart Ready Mix/(µl)</td><td>12.5</td></tr> | ||
+ | <tr><td>Fw E+Pcon+X+RBS+mamB/(µl)</td><td>0.75</td></tr> | ||
+ | <tr><td>Rv S+His+mamB/(µl)</td><td>0.75</td></tr> | ||
+ | <tr><td>9/9 DNA Purification mamB/(µl)</td><td>Trace</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>11</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>25</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/15 mamB+pSB1C3 Colony_9</td><td>350</td><td>1.68</td><td>1.81</td></tr> | ||
+ | <tr><td>9/15 mamB+pSB1C3 Colony_10</td><td>325</td><td>1.65</td><td>1.50</td></tr> | ||
+ | <tr><td>9/15 mamB+pSB1C3 Colony_11</td><td>340</td><td>1.67</td><td>1.68</td></tr> | ||
+ | <tr><td>Pcon+mamL+pSB1C3</td><td>220</td><td>1.75</td><td>2.09</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0917" class="kyoto-jump"></a> | ||
+ | <h3>9/17</h3> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_11_1</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_11_2</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_11_3</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_11_4</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_10_1</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_10_2</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_10_3</td></tr> | ||
+ | <tr><td>9/16 Transformation Mutation mamB Colony_10_4</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui and Yamauchi</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/15 Pcon+pSB1C3 Colony_3</td><td>110</td><td>1.66</td><td>1.48</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Yamauchi</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>9/16 Mutation PCR Pcon+mamB+His</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>Pcon+mamL(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>Pcon+mamL(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>9/16 Mutation PCR Pcon+mamB+His</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>mamQ+pSB1A2 Colony_4(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>mamQ(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>mamQ+pSB1A2 Colony_4(X+P)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>Pcon+mamB+His</td><td>245</td><td>1.87</td><td>2.10</td></tr> | ||
+ | <tr><td>mamQ+pSB1A2 Colony_4(X+P)</td><td>35</td><td>1.87</td><td>0.580</td></tr> | ||
+ | <tr><td>Pcon+mamL(S+P)</td><td>285 Error</td><td>1.14</td><td>0.85</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>mamQ(X+P)</td><td>3</td><td>Pcon+mamL(S+P)</td><td>1</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/17 Ligation Pcon+mamL+mamQ+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Spe1/(µl)</th><th>Xba1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/17 Gel Extraction Pcon+mamB+His</td><td>16.3</td><td>2</td><td>2</td><td>0</td><td>0</td><td>0</td><td>6(H)</td><td>33.7</td><td>60</td></tr> | ||
+ | <tr><td>9/17 Gel Extraction Pcon+mamB+His(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(H)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/17 Miniprep Pcon+pSB1C3</td><td>36.4</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0</td><td>6(H)</td><td>13.6</td><td>60</td></tr> | ||
+ | <tr><td>9/17 Miniprep Pcon+pSB1C3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(H)</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>Mutation mamB Colony_10_3</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>Mutation mamB Colony_10_4 </td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>Mutation mamB Colony_11_3</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>Mutation mamB Colony_11_4</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | <tr><td>mamQ+pSB1A2 Colony_4</td><td>Plusgrow medium(AMP)*2</td></tr> | ||
+ | <tr><td>Pcon+mamL Colony_1</td><td>Plusgrow medium(CP)*3.5</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0918" class="kyoto-jump"></a> | ||
+ | <h3>9/18</h3> | ||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui and Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/17 Liquid Culture Mutation mamB Colony_10_3</td><td>355</td><td>1.69</td><td>2.02</td></tr> | ||
+ | <tr><td>9/17 Liquid Culture Mutation mamB Colony_10_4</td><td>265</td><td>1.52</td><td>1.55</td></tr> | ||
+ | <tr><td>9/17 Liquid Culture Mutation mamB Colony_11_3</td><td>355</td><td>1.62</td><td>1.77</td></tr> | ||
+ | <tr><td>9/17 Liquid Culture Mutation mamB Colony_11_4</td><td>250</td><td>1.62</td><td>1.51</td></tr> | ||
+ | <tr><td>9/17 Liquid Culture mamQ+pSB1A2 Colony_4</td><td>290</td><td>1.41</td><td>1.10</td></tr> | ||
+ | <tr><td>9/17 Liquid Culture Pcon+mamL+pSB1C3 Colony_1</td><td>85</td><td>1.47</td><td>1.56</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR Labeling and Sequence</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/18 Miniprep Mutation mamB Colony_10_3</th><th>9/18 Miniprep Mutation mamB Colony_10_4</th><th>9/18 Miniprep Mutation mamB Colony_11_3</th><th>9/18 Miniprep Mutation mamB Colony_11_4</th><th>9/18 Miniprep Mutation mamB Colony_10_3</th><th>9/18 Miniprep Mutation mamB Colony_10_4</th><th>9/18 Miniprep Mutation mamB Colony_11_3</th><th>9/18 Miniprep Mutation mamB Colony_11_4</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>1.1</td><td>1.5</td><td>1.1</td><td>1.6</td><td>1.1</td><td>1.5</td><td>1.1</td><td>1.6</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>2</td><td>2</td><td>2</td><td>2</td><td>2</td><td>2</td><td>2</td><td>2</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.16(VF)</td><td>0.16(VF)</td><td>0.16(VF)</td><td>0.16(VF)</td><td>0.16(VR)</td><td>0.16(VR)</td><td>0.16(VR)</td><td>0.16(VR)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>5.74</td><td>5.34</td><td>5.74</td><td>5.24</td><td>5.74</td><td>5.34</td><td>5.74</td><td>5.24</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/18 Miniprep Mutation mamB Colony_10_3</th><th>9/18 Miniprep Mutation mamB Colony_10_4</th><th>9/18 Miniprep Mutation mamB Colony_11_3</th><th>9/18 Miniprep Mutation mamB Colony_11_4</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>1.1</td><td>1.5</td><td>1.1</td><td>1.6</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>2</td><td>2</td><td>2</td><td>2</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1</td><td>1</td><td>1</td><td>1</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.16(pQLB seq_2)</td><td>0.16(pQLB seq_2)</td><td>0.16(pQLB seq_2)</td><td>0.16(pQLB seq_2)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>5.74</td><td>5.34</td><td>5.74</td><td>5.24</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10</td><td>10</td><td>10</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>96℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>96℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>50℃</td><td>5sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>60℃</td><td>4min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>4℃</td><td>1min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_1</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_9</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_2</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_10</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_3</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_11</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_4</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_12</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_5</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_13</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_6</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_14</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_7</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_15</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_8</td><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_16</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>2</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>3</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>4</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>5</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_5</td></tr> | ||
+ | <tr><td>6</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_6</td></tr> | ||
+ | <tr><td>7</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_7</td></tr> | ||
+ | <tr><td>8</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_8</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td></tr> | ||
+ | <tr><td>10</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_9</td></tr> | ||
+ | <tr><td>11</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_10</td></tr> | ||
+ | <tr><td>12</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_11</td></tr> | ||
+ | <tr><td>13</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_12</td></tr> | ||
+ | <tr><td>14</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_13</td></tr> | ||
+ | <tr><td>15</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_14</td></tr> | ||
+ | <tr><td>16</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_15</td></tr> | ||
+ | <tr><td>17</td><td>9/18 Pcon+mamL+mamQ+pSB1C3 Colony_16</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/17 Digestion Pcon+mamB+His(E+S)</td><td>165</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/17 Digestion Pcon+pSB1C3(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/17 Digestion Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/17 Digestion Pcon+pSB1C3(S+P)</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/17 Digestion Pcon+pSB1C3</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>10*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>mamQ(X+P)</td><td>6</td><td>9/18 Gel Extraction Pcon+pSB1C3(S+P)</td><td>Trace</td><td>0.5</td><td>1</td><td>2.5</td><td>10</td></tr> | ||
+ | <tr><td>9/18 DNA Purification Pcon+mamB+His(E+S)</td><td>5</td><td>9/14 pSB3T5(E+S)</td><td>2</td><td>0.5</td><td>1</td><td>1.5</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/18 Ligation Pcon+mamQ+pSB1C3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/18 Ligation Pcon+mamB+His+pSB3T5</td><td>1</td><td>10</td><td>11</td><td>LB(TET)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>pSB3T5</td><td>Plusgrow medium(TET)*2</td></tr> | ||
+ | <tr><td>9/17 Transformation Pcon+mamL+mamQ+pSB1C3</td><td>Plusgrow medium(CP)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_3</td><td>11.2</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>56</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_4</td><td>15.1</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>52.1</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_4(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_11_3</td><td>11.2</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>56</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_11_3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_11_4</td><td>16</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>51.2</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_11_4(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep mamQ+pSB1A2</td><td>34.5</td><td>0</td><td>5</td><td>0</td><td>5</td><td>2</td><td>20(D)</td><td>133.5</td><td>200</td></tr> | ||
+ | <tr><td>9/18 Miniprep mamQ+pSB1A2(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/17 Miniprep Pcon+pSB1C3</td><td>40</td><td>0</td><td>0</td><td>2</td><td>2</td><td>0.8</td><td>8(B)</td><td>27.2</td><td>80</td></tr> | ||
+ | <tr><td>9/17 Miniprep Pcon+pSB1C3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(B)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep Pcon+mamL+pSB1C3</td><td>47</td><td>0</td><td>0</td><td>2</td><td>2</td><td>0.8</td><td>8(B)</td><td>20.2</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Pcon+mamL+pSB1C3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(B)</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0919" class="kyoto-jump"></a> | ||
+ | <h3>9/19</h3> | ||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/18 Liquid Culture pSB3T5</td><td>115</td><td>1.52</td><td>1.22</td></tr> | ||
+ | <tr><td>9/18 Liquid Culture Pcon+mamL+mamQ+pSB1C3</td><td>75</td><td>1.59</td><td>1.20</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR Labeling and Sequence</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</th><th>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</th><th>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</th><th>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</th></tr> | ||
+ | <tr><td>Template/(µl)</td><td>3.5</td><td>3.5</td><td>3.5</td><td>3.5</td></tr> | ||
+ | <tr><td>Big dye/(µl)</td><td>0.5</td><td>0.5</td><td>0.5</td><td>0.5</td></tr> | ||
+ | <tr><td>5×Buffer/(µl)</td><td>1.75</td><td>1.75</td><td>1.75</td><td>1.75</td></tr> | ||
+ | <tr><td>Primer/(µl)</td><td>0.5(VF)</td><td>0.5(VR)</td><td>0.5(seq_1)</td><td>0.5(seq_2)</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>4.25</td><td>4.25</td><td>4.25</td><td>4.25</td></tr> | ||
+ | <tr><td>TOTAL/(µl)</td><td>10.5</td><td>10.5</td><td>10.5</td><td>10.5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>96℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>96℃</td><td>10sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>50℃</td><td>5sec</td><td>30cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>60℃</td><td>4min</td><td>30cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>4℃</td><td>1min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/18 Digestion Mutation mamB Colony_10_3(X+P)</td><td>40</td></tr> | ||
+ | <tr><td>4</td><td>9/18 Digestion Mutation mamB Colony_10_3(Nega)</td><td>10</td></tr> | ||
+ | <tr><td>5</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>9/18 Digestion Mutation mamB Colony_10_3(X+P)</td><td>40</td></tr> | ||
+ | <tr><td>8</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>9/18 Digestion Mutation mamB Colony_10_4(Nega)</td><td>10</td></tr> | ||
+ | <tr><td>11</td><td>9/18 Digestion Mutation mamB Colony_10_4(X+P)</td><td>40</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>9/18 Digestion mamQ+pSB1A2(X+P)</td><td>200</td></tr> | ||
+ | <tr><td>2</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅢ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>100b ladder</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>9/18 Digestion Pcon+pSB1C3(Nega)</td><td>10</td></tr> | ||
+ | <tr><td>3</td><td>9/18 Digestion Pcon+pSB1C3(S+P)</td><td>80</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>mamB Colony_10_3(X+P)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamB Colony_10_4(X+P)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamQ+pSB1A2(X+P)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>Pcon+pSB1C3(S+P)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>Pcon+mamQ+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>4</td><td>Pcon+mamQ+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>5</td><td>Pcon+mamQ+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>6</td><td>Pcon+mamQ+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>7</td><td>Pcon+mamQ+pSB1C3 Colony_5</td></tr> | ||
+ | <tr><td>8</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</td><td>34.7</td><td>0</td><td>0</td><td>2</td><td>2</td><td>0.8</td><td>8(B)</td><td>32.5</td><td>80</td></tr> | ||
+ | <tr><td>9/19 Miniprep pSB3T5</td><td>53.3</td><td>2</td><td>0</td><td>2</td><td>0</td><td>0.8</td><td>8(B)</td><td>14</td><td>80</td></tr> | ||
+ | <tr><td>9/19 Miniprep pSB3T5(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(B)</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Target</th><th>Pcon+mamB+His</th></tr> | ||
+ | <tr><td>KOD Plus/(µl)</td><td>1</td></tr> | ||
+ | <tr><td>10×Buffer/(µl)</td><td>5</td></tr> | ||
+ | <tr><td>2mM dNTPS/(µl)</td><td>5</td></tr> | ||
+ | <tr><td>25mM MgSO4/(µl)</td><td>3</td></tr> | ||
+ | <tr><td>Fw Primer(E+Pcon+X+RBS+mamB)/(µl)</td><td>2</td></tr> | ||
+ | <tr><td>Rv Primer(S+His+mamB)/(µl)</td><td>2</td></tr> | ||
+ | <tr><td>Template/(µl)</td><td>0.5</td></tr> | ||
+ | <tr><td>MilliQ/(µl)</td><td>31.5</td></tr> | ||
+ | <tr><td>Total/(µl)</td><td>50</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>98℃</td><td>2min</td><td>1time</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>10sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>15sec</td><td>25cycle</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>1min</td><td>25cycle</td></tr> | ||
+ | <tr><td>Final elongation</td><td>72℃</td><td>5min</td><td>1time</td></tr> | ||
+ | <tr><td>Final hold</td><td>12℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/18 Digestion mamL+pSB1C3(S+P)</td><td>55</td><td>1.66</td><td>1.66</td></tr> | ||
+ | <tr><td>9/19 PCR Pcon+mamB+His</td><td>150</td><td>1.63</td><td>1.52</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/19 DNA Purification Pcon+mamB+His</td><td>20</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0.8</td><td>8(B)</td><td>49.2</td><td>80</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Liquid Culture</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_1</td><td>Plusgrow medium(TET)</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_2</td><td>Plusgrow medium(TET)</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_3</td><td>Plusgrow medium(TET)</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_4</td><td>Plusgrow medium(TET)</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_5</td><td>Plusgrow medium(TET)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0920" class="kyoto-jump"></a> | ||
+ | <h3>9/20</h3> | ||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>100b ladder</td></tr> | ||
+ | <tr><td>3</td><td>Pcon+mamQ+pSB1C3 Colony_1</td></tr> | ||
+ | <tr><td>4</td><td>Pcon+mamQ+pSB1C3 Colony_2</td></tr> | ||
+ | <tr><td>5</td><td>Pcon+mamQ+pSB1C3 Colony_3</td></tr> | ||
+ | <tr><td>6</td><td>Pcon+mamQ+pSB1C3 Colony_4</td></tr> | ||
+ | <tr><td>7</td><td>Pcon+mamQ+pSB1C3 Colony_5</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_3</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_5</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th></tr> | ||
+ | <tr><td>Pcon+mamB+His+pSB3T5 Colony_1(VF+VR)</td></tr> | ||
+ | <tr><td>Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Yasuda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td></tr> | ||
+ | <tr><td>1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>100b ladder</td></tr> | ||
+ | <tr><td>3</td><td>100b ladder</td></tr> | ||
+ | <tr><td>4</td><td>Pcon+mamB+His+pSB3T5 Colony_1(VF+VR)</td></tr> | ||
+ | <tr><td>5</td><td>Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR)</tr> | ||
+ | <tr><td>6</td><td>100b ladder</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_3</td><td>11.2</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>56</td><td>80</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_3(Nega)</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_4</td><td>15.1</td><td>0</td><td>2</td><td>0</td><td>2</td><td>0.8</td><td>8(D)</td><td>56</td><td>83.9</td></tr> | ||
+ | <tr><td>9/18 Miniprep Mutation mamB Colony_10_4(Nega)</td><td>1</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0</td><td>1(D)</td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Gel Extraction</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅠ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>100b ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>Digestion Mutation mamB Colony_10_3(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>Digestion Mutation mamB Colony_11_3(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>Digestion Mutation mamB Colony_11_3(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>1kb ladder</td><td>-</td></tr> | ||
+ | <tr><td>10</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>11</td><td>Digestion Mutation mamB Colony_11_3(X+P)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅡ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>100b ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>9/19 Digestion pSB3T5(Nega)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>9/19 Digestion pSB3T5(E+S)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>SampleⅢ</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>100b ladder</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>Digestion Mutation mamB Colony_11_4(X+P)</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>Digestion Mutation mamB Colony_11_4(Nega)</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>mamB Colony_10_3(X+P)</td><td>60</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>mamB Colony_11_3(X+P)</td><td>85</td><td>1.38</td><td>2.04</td></tr> | ||
+ | <tr><td>mamB Colony_11_4(X+P)</td><td>60</td><td>0.58</td><td>2.32</td></tr> | ||
+ | <tr><td>pSB3T5(E+S)</td><td>70</td><td>0.44</td><td>2.04</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>DNA Purification</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>Pcon+mamL+mamQ(S+P)</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>2*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>mamB Colony_10_3(X+P)</td><td>1.7</td><td>Pcon+mamL+mamQ(S+P)</td><td>2.3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>mamB Colony_10_4(X+P)</td><td>1.7</td><td>Pcon+mamL+mamQ(S+P)</td><td>2.3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>mamB Colony_11_3(X+P)</td><td>1.7</td><td>Pcon+mamL+mamQ(S+P)</td><td>2.3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>mamB Colony_11_4(X+P)</td><td>1.7</td><td>Pcon+mamL+mamQ(S+P)</td><td>2.3</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | <tr><td>pSB3T5(E+S)</td><td>1.4</td><td>Pcon+mamB+His(E+S)</td><td>2.6</td><td>1</td><td>5</td><td>0</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Transformation</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Sample/(µL)</th><th>CompetentCells/(µl)</th><th>Total/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_4</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_3</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_4</td><td>1</td><td>10</td><td>11</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>9/20 Ligation Pcon+mamB+His</td><td>1</td><td>10</td><td>11</td><td>LB(TET)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | |||
+ | <div> | ||
+ | <a name="0922" class="kyoto-jump"></a> | ||
+ | <h3>9/22</h3> | ||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th><th>NameⅢ</th><th>NameⅣ</th></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>NameⅤ</th><th>NameⅥ</th></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamB+His Colony_1</td><td>9/19 Transformation Pcon+mamB+His Colony_1</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamB+His Colony_2</td><td>9/19 Transformation Pcon+mamB+His Colony_2</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamB+His Colony_3</td><td>9/19 Transformation Pcon+mamB+His Colony_3</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamB+His Colony_4</td><td>-</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamB+His Colony_5</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td><th>Colony PCR ProductsⅡ</td></tr> | ||
+ | <tr><td>1</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_1</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_1</td></tr> | ||
+ | <tr><td>2</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_2</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2</td></tr> | ||
+ | <tr><td>3</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_3</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_3</td></tr> | ||
+ | <tr><td>4</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_4</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_4</td></tr> | ||
+ | <tr><td>5</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_5</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_5</td></tr> | ||
+ | <tr><td>6</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_6</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_6</td></tr> | ||
+ | <tr><td>7</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_7</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_7</td></tr> | ||
+ | <tr><td>8</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_8</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_8</td></tr> | ||
+ | <tr><td>9</td><td>100b ladder</td><td>100b ladder</td></tr> | ||
+ | <tr><td>10</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_1</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_1</td></tr> | ||
+ | <tr><td>11</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_2</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_2</td></tr> | ||
+ | <tr><td>12</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_3</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_3</td></tr> | ||
+ | <tr><td>13</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_4</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_4</td></tr> | ||
+ | <tr><td>14</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_5</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_5</td></tr> | ||
+ | <tr><td>15</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_6</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_6</td></tr> | ||
+ | <tr><td>16</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_7</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_7</td></tr> | ||
+ | <tr><td>17</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_8</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_8</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Ligation</h4> | ||
+ | <span class="author">No Name</span> | ||
+ | <table class="note"> | ||
+ | <tr><th colspan=2>Insert/(µL)</th><th colspan=2>Vector/(µL)</th><th>T4 Ligase/(µl)</th><th>10*Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>mamB Colony_10_3(X+P)</td><td>1</td><td>Pcon+mamL+mamQ(S+P)</td><td>7.5</td><td>0.5</td><td>1</td><td>0</td><td>10</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Restriction Enzyme Digestion</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>BSA</th><th>Buffur/(µl)</th><th>CLAP/(µl)</th><th>MilliQ/(µl)</th><th>TOTAL/(µl)</tr> | ||
+ | <tr><td>9/19 Miniprep Pcon+mamL+mamQ+pSB1C3</td><td>34.8</td><td>0</td><td>0</td><td>2</td><td>2</td><td>0.8</td><td>8(B)</td><td>1</td><td>31.4</td><td>80</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Colony PCR</h4> | ||
+ | <span class="author">Honda</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>NameⅠ</th><th>NameⅡ</th><th>NameⅢ</th><th>NameⅣ</th></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8</td><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <table class="note"> | ||
+ | <tr><th>NameⅤ</th></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR)</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR)</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R)</td></tr> | ||
+ | <tr><td>9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R)</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Electrophoresis</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>Lane</th><th>Colony PCR ProductsⅠ</td><th>Colony PCR ProductsⅡ</td><th>Colony PCR ProductsⅢ</td></tr> | ||
+ | <tr><td>1</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_1</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_2</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_3</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_3</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_4</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_4</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_5</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_5</td><td>-</td></tr> | ||
+ | <tr><td>6</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_6</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_6</td><td>-</td></tr> | ||
+ | <tr><td>7</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_7</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_7</td><td>-</td></tr> | ||
+ | <tr><td>8</td><td>Pcon+mamL+mamQ+mamB Colony_10_3_8</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_8</td><td>-</td></tr> | ||
+ | <tr><td>9</td><td>100b ladder</td><td>100b ladder</td><td>100b ladder</td></tr> | ||
+ | <tr><td>10</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_1</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_1</td><td>9/19 Transformation Pcon+mamB+His Colony_1</td></tr> | ||
+ | <tr><td>11</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_2</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_2</td><td>9/19 Transformation Pcon+mamB+His Colony_2</td></tr> | ||
+ | <tr><td>12</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_3</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_3</td><td>9/19 Transformation Pcon+mamB+His Colony_3</td></tr> | ||
+ | <tr><td>13</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_4</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_4</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR)</td></tr> | ||
+ | <tr><td>14</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_5</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_5</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR)</td></tr> | ||
+ | <tr><td>15</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_6</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_6</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R)</td></tr> | ||
+ | <tr><td>16</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_7</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_7</td><td>Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R)</td></tr> | ||
+ | <tr><td>17</td><td>Pcon+mamL+mamQ+mamB Colony_10_4_8</td><td>Pcon+mamL+mamQ+mamB Colony_11_4_8</td><td>-</td></tr> | ||
+ | </table> | ||
+ | |||
+ | <h4>Miniprep</h4> | ||
+ | <span class="author">Tatsui</span> | ||
+ | <table class="note"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>Pcon+mamQ+pSB1C3 Colony_3</td><td>85</td><td>1.51</td><td>0.79</td></tr> | ||
+ | <tr><td>Pcon+mamQ+pSB1C3 Colony_5</td><td>60</td><td>1.94</td><td>1.12</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
</div> | </div> | ||
</html> | </html> |
Latest revision as of 11:16, 28 September 2014
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Home | Team | Official Team Profile | Project | Parts | Modeling | Notebook | Safety | Attributions |
Notebook
Calendar
July | ||||||
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1 | 2 | 3 | 4 | 5 | ||
6 | 7 | 8 | 9 | 10 | 11 | 12 |
13 | 14 | 15 | 16 | 17 | 18 | 19 |
20 | 21 | 22 | 23 | 24 | 25 | 26 |
27 | 28 | 29 | 30 | 31 |
August | ||||||
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1 | 2 | |||||
3 | 4 | 5 | 6 | 7 | 8 | 9 |
10 | 11 | 12 | 13 | 14 | 15 | 16 |
17 | 18 | 19 | 20 | 21 | 22 | 23 |
24 | 25 | 26 | 27 | 28 | 29 | 30 |
31 |
September | ||||||
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1 | 2 | 3 | 4 | 5 | 6 | |
7 | 8 | 9 | 10 | 11 | 12 | 13 |
14 | 15 | 16 | 17 | 18 | 19 | 20 |
21 | 22 | 23 | 24 | 25 | 26 | 27 |
28 | 29 | 30 |
Octorber | ||||||
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | |||
5 | 6 | 7 | 8 | 9 | 10 | 11 |
12 | 13 | 14 | 15 | 16 | 17 | 18 |
19 | 20 | 21 | 22 | 23 | 24 | 25 |
26 | 27 | 28 | 29 | 30 | 31 |
7/15
transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J23101(Pcon) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0032(RBS) | 2 | 20(2/23) | 22 | LB(CP) |
7/16
transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_B0030(1) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0030(2) | 2 | 20(bought) | 22 | LB(CP) |
BBa_B0032(1) | 2 | 20(2/23) | 22 | LB(CP) |
BBa_B0032(2) | 2 | 20(bought) | 22 | LB(CP) |
7/17
Colony PCR
NameⅠ | NameⅡ |
---|---|
7/16 BBa_B0030(1) Colony_1 | 7/16 BBa_B0032(1) Colony_1 |
7/16 BBa_B0030(1) Colony_2 | 7/16 BBa_B0032(1) Colony_2 |
7/16 BBa_B0030(1) Colony_3 | 7/16 BBa_B0032(1) Colony_3 |
7/16 BBa_B0030(2) Colony_1 | 7/16 BBa_B0032(2) Colony_1 |
7/16 BBa_B0030(2) Colony_2 | 7/16 BBa_B0032(2) Colony_2 |
7/16 BBa_B0030(2) Colony_3 | 7/16 BBa_B0032(2) Colony_3 |
Negative Control | - |
- | - |
Liquid Culture
Name | medium |
---|---|
7/16 BBa_B0030(1) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0030(1) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0030(1) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0030(2) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0032(1) Colony_3 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_1 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_2 | Plusgrow medium(CP) |
7/16 BBa_B0032(2) Colony_3 | Plusgrow medium(CP) |
7/18
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
7/16 BBa_B0030(1) Colony_1 | 229 | 1.96 | 1.40 |
7/16 BBa_B0030(1) Colony_2 | 209 | 1.95 | 1.50 |
7/16 BBa_B0030(1) Colony_3 | 108 | 2.12 | 2.12 |
7/16 BBa_B0030(2) Colony_1 | - | - | - |
7/16 BBa_B0030(2) Colony_2 | 174 | 2.02 | 1.56 |
7/16 BBa_B0030(2) Colony_3 | 158 | 2.01 | 1.68 |
7/16 BBa_B0032(1) Colony_1 | 179 | 2.00 | 2.06 |
7/16 BBa_B0032(1) Colony_2 | - | - | - |
7/16 BBa_B0032(1) Colony_3 | 221 | 1.90 | 1.37 |
7/16 BBa_B0032(2) Colony_1 | 225 | 1.89 | 1.37 |
7/16 BBa_B0032(2) Colony_2 | 270 | 1.98 | 1.63 |
7/16 BBa_B0032(2) Colony_3 | 194 | 1.89 | 1.33 |
7/30
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
7/16 BBa_B0030(2) Colony_1 | 1 | 0.3 | 0 | 0 | 0 | 1(H) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0.3 | 0 | 0 | 1(M) | 1 | 6.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0 | 0.3 | 0 | 1(M) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1 | 1 | 0 | 0 | 0 | 0.3 | 1(H) | 0 | 7.7 | 10 |
7/16 BBa_B0030(2) Colony_1(Nega) | 1 | 0 | 0 | 0 | 0 | 1(M) | 0 | 8 | 10 |
Electrophoresis
Lane | Restriction Enzyme Digestion Products |
---|---|
1 | 7/30 BBa_B0030(2) Colony_1(E CUT) |
2 | 7/30 BBa_B0030(2) Colony_1(X CUT) |
3 | 7/30 BBa_B0030(2) Colony_1(S CUT) |
4 | 7/30 BBa_B0030(2) Colony_1(P CUT) |
5 | 7/30 BBa_B0030(2) Colony_1(Nega) |
6 | 1kbp ladder |
7/31
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_E0240(RBS-GFP-DT) | 2 | 20 | 22 | LB(CP) |
J23100(Pcon) | 2 | 20 | 22 | LB(AMP) |
Liquid Culture
Name | medium |
---|---|
7/31 J23100(Pcon) Colony_1 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_2 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_3 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_4 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_5 | Plusgrow medium(AMP) |
7/31 J23100(Pcon) Colony_6 | Plusgrow medium(AMP) |
Restriction Enzyme Digestion
7/18 RBS Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Pst1/(µl) | Xba1/(µl) | Buffur/(µl) | BSA/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
BBa_B0032 | 5 | 0.3 | 0 | 0 | 0 | 1(H) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0.3 | 0 | 0 | 1(M) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0 | 0.3 | 0 | 1(H) | 0 | 3.7 | 10 |
BBa_B0032 | 5 | 0 | 0 | 0 | 0.3 | 1(M) | 1 | 2.7 | 10 |
BBa_B0032(Nega) | 5 | 0 | 0 | 0 | 0 | 1(M) | 0 | 4 | 10 |
8/1
Electrophoresis
Lane | Restriction Enzyme Digestion Products |
---|---|
1 | 1kb ladder |
2 | 7/31 BBa_B0032(E CUT) |
3 | 7/31 BBa_B0032(S CUT)Error |
4 | - |
5 | - |
6 | 7/31 BBa_B0032(P CUT) |
7 | 7/31 BBa_B0032(X CUT) |
8 | 7/31 BBa_B0032(Nega) |
PCR
BBa_E0240(RBS-GFP-DT) | Volume |
---|---|
10×buffur/(µl) | 5 |
2mMdNTPs/(µl) | 5 |
25mM MgSO4/(µl) | 2 |
VF Primer/(µl) | 1.5 |
VR Primer/(µl) | 1.5 |
template/(µl) | 0.5 |
KOD-plus/(µl) | 1 |
MilliQ/(µl) | 33.5 |
TOTAL/(µl) | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 94℃ | 2min | 1time |
Denature | 94℃ | 15sec | 30cycle |
Annealing | 55℃ | 30sec | 30cycle |
Extension | 68℃ | 1min | 30cycle |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Product | 80 | 1.91 | 1.78 |
8/2
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
7/31 J23100(Pcon) Colony_1 | 145 | 2.11 | 3.09 |
7/31 J23100(Pcon) Colony_2 | - | - | - |
7/31 J23100(Pcon) Colony_3 | 160 | 2.01 | 3.13 |
7/31 J23100(Pcon) Colony_4 | 140 | 1.87 | 2.70 |
7/31 J23100(Pcon) Colony_5 | 105 | 2.39 | 5.90 |
7/31 J23100(Pcon) Colony_6 | 180 | 1.90 | 1.37 |
8/20
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
7/31 BBa_E0240(RBS-GFD-DT) | 2 | 20 | 22 | LB(CP) |
BBa_I732095 | 2 | 20 | 22 | LB(CP) |
8/21
Colony PCR
NameⅠ |
---|
8/20 BBa_I732095 Colony_1 |
8/20 BBa_I732095 Colony_2 |
8/20 BBa_I732095 Colony_3 |
Negative control |
Electrophoresis
Lane | PCR Product |
---|---|
1 | 1kb ladder |
2 | 8/21 BBa_I732095 Colony_1 |
3 | 8/21 BBa_I732095 Colony_2 |
4 | 8/21 BBa_I732095 Colony_3 |
5 | Negative Control |
Liquid Culture
Name | medium |
---|---|
8/20 BBa_I732095 Colony_1 | Plusgrow medium(CP) |
8/20 BBa_I732095 Colony_2 | Plusgrow medium(CP) |
8/20 BBa_I732095 Colony_3 | Plusgrow medium(CP) |
8/22
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/20 BBa_I732095 Colony_1 | 430 | 1.68 | 2.13 |
8/20 BBa_I732095 Colony_2 | 255 | 1.87 | 1.81 |
8/20 BBa_I732095 Colony_3 | 215 | 1.78 | 1.35 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/22 BBa_I732095 Colony_1 | 4.7 | 1 | 1 | 3(H) | 20.3 | 30 |
8/22 BBa_I732095 Colony_2 | 7.8 | 1 | 1 | 3(H) | 17.2 | 30 |
8/22 BBa_I732095 Colony_3 | 9.3 | 1 | 1 | 3(H) | 15.7 | 30 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB3C5) | 2 | 20 | 22 | LB(CP) |
8/25
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB2K3) | 2 | 20 | 22 | LB(KAN) |
BBa_C0051(pSB1A2) | 2 | 20 | 22 | LB(AMP) |
Liquid Culture
Name | medium |
---|---|
8/22 BBa_J04450(pSB3C5) | Plusgrow medium(CP)*5 |
8/26
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/25 BBa_J04450(pSB3C5) | 575 | 1.37 | 1.37 |
Liquid Culture
Name | medium |
---|---|
8/25 BBa_J04450(pSB2K3) | Plusgrow medium(KAN)*5 |
8/25 BBa_J0051(pSB1A2) | Plusgrow medium(AMP)*2 |
8/27
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/26 BBa_J04450(pSB2K3) | 1045 | 1.43 | 1.11 |
8/26 BBa_J0051(pSB1A2) | 790 | 1.39 | 0.90 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB3T5) | 2 | 20 | 22 | LB(TET) |
8/29
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/28 BBa_J04450(pSB3T5) | 180 | 1.60 | 1.67 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
BBa_J04450(pSB4A5) | 2 | 20 | 22 | LB(AMP) |
9/1
Colony PCR
NameⅠ |
---|
- |
- |
- |
9/1 pSB4A5 Colony_1 |
9/1 pSB4A5 Colony_2 |
Negative Control |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/28 Miniprep pSB3T5 | 25 | 2 | 2 | 6(H) | 25 | 60 |
Negative control_1 | 3.7 | 0 | 0 | 1(H) | 5.3 | 10 |
8/22 Miniprep I732095 | 14 | 3 | 3 | 9(H) | 61 | 90 |
Negative control_2 | 1.5 | 0 | 0 | 1(H) | 7.5 | 10 |
8/27 Miniprep pSB2K3 | 6 | 3 | 3 | 9(H) | 69 | 90 |
Negative control_3 | 1 | 0 | 0 | 1(H) | 8 | 10 |
8/2 Miniprep Pcon Colony_3 | 20 | 1.5 | 1.5 | 5(H) | 17 | 45 |
Negative control_4 | 4 | 0 | 0 | 1(H) | 5 | 10 |
8/2 Miniprep Pcon Colony_1 | 20 | 1.5 | 1.5 | 5(H) | 17 | 45 |
Negative control_5 | 4 | 0 | 0 | 1(H) | 5 | 10 |
Liquid Culture
Name | medium |
---|---|
8/29 BBa_J04450(pSB4A5) Colony_1 | Plusgrow medium(AMP)*2 |
8/1 Pcon Colony_1 | Plusgrow medium(AMP)*2 |
8/27 pSB3T5 Colony_1 | Plusgrow medium(TET)*2 |
9/2
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/29 BBa_J04450(pSB4A5) Colony_1 | 210 | 1.61 | 1.18 |
8/1 Pcon Colony_1 | 215 | 1.79 | 1.87 |
8/27 pSB3T5 Colony_1 | 215 | 1.58 | 0.92 |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 9/1 pSB3T5 Colony_1 (Nega) | 10 |
2 | 9/1 pSB3T5 Colony_1 (E+P)(Confirmation) | 5 |
3 | 9/1 pSB3T5 Colony_1 (E+P)(Extraction) | 55 |
4 | 1kb ladder | 3 |
5 | 9/1 I732095 (Nega) | 10 |
6 | 9/1 I732095 (E+P)(Confirmation) | 5 |
7 | 9/1 I732095 (E+P)(Extraction) | 85 |
8 | 1kb ladder | 3 |
9 | 9/1 pSB2K3 (Nega) | 10 |
10 | 9/1 pSB2K3 (E+P)(Confirmation) | 5 |
11 | 9/1 pSB2K3 (E+P)(Extraction) | 85 |
Lane | Sample | Volume/(µl) |
---|---|---|
1 | 9/1 Pcon Colony_3 (E+P)(Confirmation) | 5 |
2 | 9/1 Pcon Colony_3 (E+P)(Extraction) | 20 |
3 | 9/1 Pcon Colony_3 (E+P)(Extraction) | 20 |
4 | 9/1 Pcon Colony_3 (Nega) | 10 |
5 | 1kb ladder | 3 |
6 | 9/1 Pcon Colony_1 (E+P)(Confirmation) | 5 |
7 | 9/1 Pcon Colony_1 (E+P)(Extraction) | 20 |
8 | 9/1 Pcon Colony_1 (E+P)(Extraction) | 20 |
9 | 9/1 Pcon Colony_1 (Nega) | 10 |
9/3
Concentration Measurement
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
pSB2K3 | 40 | 1.48 | 0.10 |
Pcon Colony_1 | 30 | 1.76 | 0.62 |
pSB3T5 | 50 | 2.35 | 0.50 |
pSB1C3 | 65 | 2.14 | 0.10 |
Pcon Colony_3 | 45 | 1.56 | 0.58 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
Pcon | 2.1 | pSB1C3 | 1.5 | 1 | 5 | 0.4 | 10 |
-(Negative Control) | 0 | pSB1C3 | 1.5 | 1 | 5 | 2.5 | 10 |
Pcon | 1.3 | pSB2K3 | 2.5 | 1 | 5 | 0.2 | 10 |
-(Negative Control) | 0 | pSB2K3 | 2.5 | 1 | 5 | 1.5 | 10 |
Pcon | 10 | pSB3T5 | 2.3 | 1 | 5 | 0.7 | 10 |
-(Negative Control) | 0 | pSB3T5 | 2.3 | 1 | 5 | 1.7 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/3 Ligation Pcon+pSB1C3 | 3 | 15 | 18 | LB(CP) |
9/3 Ligation pSB1C3(Negative Control) | 8 | 10 | 18 | LB(CP) |
9/3 Ligation Pcon+pSB2K3 | 3 | 15 | 18 | LB(KAN) |
9/3 Ligation pSB2K3(Negative Control) | 8 | 10 | 18 | LB(KAN) |
9/3 Ligation Pcon+pSB3T5 | 3 | 15 | 18 | LB(TET) |
9/3 Ligation pSB3T5(Negative Control) | 2 | 10 | 12 | LB(TET) |
9/4
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
- | 9/3 pSB1C3(Nega) Colony_7 | 9/3 Pcon+pSB3T5 Colony_5 | 9/3 Pcon+pSB2K3 Colony_1 |
- | 9/3 pSB1C3(Nega) Colony_8 | 9/3 Pcon+pSB3T5 Colony_6 | 9/3 Pcon+pSB2K3 Colony_2 |
9/3 pSB1C3(Nega) Colony_1 | 9/3 Pcon+pSB3T5 Colony_1 | 9/3 Pcon+pSB3T5 Colony_7 | 9/3 Pcon+pSB2K3 Colony_3 |
9/3 pSB1C3(Nega) Colony_2 | 9/3 Pcon+pSB3T5 Colony_2 | 9/3 Pcon+pSB3T5 Colony_8 | 9/3 Pcon+pSB2K3 Colony_4 |
9/3 pSB1C3(Nega) Colony_3 | 9/3 Pcon+pSB3T5 Colony_3 | 9/3 Pcon+pSB3T5 Colony_9 | 9/3 Pcon+pSB2K3 Colony_5 |
9/3 pSB1C3(Nega) Colony_4 | 9/3 Pcon+pSB3T5 Colony_4 | 9/3 Pcon+pSB3T5 Colony_10 | 9/3 Pcon+pSB2K3 Colony_6 |
9/3 pSB1C3(Nega) Colony_5 | 9/3 pSB1C3(Nega) Colony_9 | 9/3 pSB3T5(Nega) Colony_1 | 9/3 Pcon+pSB2K3 Colony_7 |
9/3 pSB1C3(Nega) Colony_6 | 9/3 pSB1C3(Nega) Colony_10 | 9/3 pSB3T5(Nega) Colony_2 | 9/3 Pcon+pSB2K3 Colony_8 |
NameⅤ | NameⅥ | NameⅦ | NameⅧ |
---|---|---|---|
9/3 Pcon+pSB2K3 Colony_9 | 9/3 Pcon+pSB1C3 Colony_2 | 9/3 Pcon+pSB1C3 Colony_10 | 9/3 pSB1C3(Nega) Colony_8 |
9/3 Pcon+pSB2K3 Colony_10 | 9/3 Pcon+pSB1C3 Colony_3 | 9/3 pSB1C3(Nega) Colony_1 | 9/3 pSB1C3(Nega) Colony_9 |
9/3 pSB2K3(Nega) Colony_1 | 9/3 Pcon+pSB1C3 Colony_4 | 9/3 pSB1C3(Nega) Colony_2 | 9/3 pSB1C3(Nega) Colony_10 |
9/3 pSB2K3(Nega) Colony_2 | 9/3 Pcon+pSB1C3 Colony_5 | 9/3 pSB1C3(Nega) Colony_3 | 9/3 pSB1C3(Nega) Colony_11 |
9/3 pSB2K3(Nega) Colony_3 | 9/3 Pcon+pSB1C3 Colony_6 | 9/3 pSB1C3(Nega) Colony_4 | - |
9/3 pSB2K3(Nega) Colony_4 | 9/3 Pcon+pSB1C3 Colony_7 | 9/3 pSB1C3(Nega) Colony_5 | - |
9/3 pSB2K3(Nega) Colony_5 | 9/3 Pcon+pSB1C3 Colony_8 | 9/3 pSB1C3(Nega) Colony_6 | - |
9/3 Pcon+pSB1C3 Colony_1 | 9/3 Pcon+pSB1C3 Colony_9 | 9/3 pSB1C3(Nega) Colony_7 | - |
NameⅨ | NameⅩ |
---|---|
9/3 Pcon+pSB1C3 Colony_11 | 8/22 Miniprep I732095 Colony_3 |
Negative Control | - |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
8/27 Miniprep pSB2K3 | 2 | 1 | 1 | 3(H) | 23 | 30 |
8/27 Miniprep pSB2K3(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
9/2 Miniprep pSB3T5 | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/2 Miniprep pSB3T5(Nega) | 3 | 0 | 0 | 1(H) | 6 | 10 |
9/2 Miniprep pSB4A5 | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/2 Miniprep pSB4A5(Nega) | 3 | 0 | 0 | 1(H) | 6 | 10 |
8/22 Miniprep pSB1C3 Colony_2 | 2 | 1 | 1 | 1(H) | 5 | 10 |
9/5
Electrophoresis
Lane | Colony PCR ProductsⅠ | Lane | Colony PCR ProductsⅠ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB1C3(Nega) Colony_7 |
2 | - | 11 | 9/4 pSB1C3(Nega) Colony_8 |
3 | - | 12 | 9/4 pSB1C3(Nega) Colony_9 |
4 | 9/4 pSB1C3(Nega) Colony_1 | 13 | 9/4 pSB1C3(Nega) Colony_10 |
5 | 9/4 pSB1C3(Nega) Colony_2 | 14 | 9/4 Pcon+pSB2K3 Colony_1 |
6 | 9/4 pSB1C3(Nega) Colony_3 | 15 | 9/4 Pcon+pSB2K3 Colony_2 |
7 | 9/4 pSB1C3(Nega) Colony_4 | 16 | 9/4 Pcon+pSB2K3 Colony_3 |
8 | 9/4 pSB1C3(Nega) Colony_5 | 17 | 1kb ladder |
9 | 9/4 pSB1C3(Nega) Colony_6 |
Lane | Colony PCR ProductsⅡ | Lane | Colony PCR ProductsⅡ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB3T5(Nega) Colony_2 |
2 | 9/4 Pcon+pSB2K3 Colony_4 | 11 | 9/4 Pcon+pSB2K3 Colony_1 |
3 | 9/4 Pcon+pSB2K3 Colony_5 | 12 | 9/4 Pcon+pSB2K3 Colony_2 |
4 | 9/4 Pcon+pSB2K3 Colony_6 | 13 | 9/4 Pcon+pSB2K3 Colony_3 |
5 | 9/4 Pcon+pSB2K3 Colony_7 | 14 | 9/4 Pcon+pSB2K3 Colony_4 |
6 | 9/4 Pcon+pSB2K3 Colony_8 | 15 | 9/4 Pcon+pSB2K3 Colony_5 |
7 | 9/4 Pcon+pSB2K3 Colony_9 | 16 | 9/4 Pcon+pSB2K3 Colony_6 |
8 | 9/4 Pcon+pSB3T5 Colony_10 | 17 | 1kb ladder |
9 | 9/4 pSB3T5(Nega) Colony_1 |
Lane | Colony PCR ProductsⅢ | Lane | Colony PCR ProductsⅢ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 pSB2K3(Nega) Colony_5 |
2 | 9/4 Pcon+pSB2K3 Colony_7 | 11 | 9/4 pSB1C3(Nega) Colony_1 |
3 | 9/4 Pcon+pSB2K3 Colony_8 | 12 | 9/4 pSB1C3(Nega) Colony_2 |
4 | 9/4 Pcon+pSB2K3 Colony_9 | 13 | 9/4 pSB1C3(Nega) Colony_3 |
5 | 9/4 Pcon+pSB2K3 Colony_10 | 14 | 9/4 pSB1C3(Nega) Colony_4 |
6 | 9/4 pSB2K3(Nega) Colony_1 | 15 | 9/4 pSB1C3(Nega) Colony_5 |
7 | 9/4 pSB2K3(Nega) Colony_2 | 16 | 9/4 pSB1C3(Nega) Colony_6 |
8 | 9/4 pSB2K3(Nega) Colony_3 | 17 | 1kb ladder |
9 | 9/4 pSB2K3(Nega) Colony_4 |
Lane | Colony PCR ProductsⅣ | Lane | Colony PCR ProductsⅣ |
---|---|---|---|
1 | 1kb ladder | 10 | 9/4 Pcon+pSB1C3 Colony_5 |
2 | 9/4 pSB1C3(Nega) Colony_7 | 11 | 9/4 Pcon+pSB1C3 Colony_6 |
3 | 9/4 pSB1C3(Nega) Colony_8 | 12 | 9/4 Pcon+pSB1C3 Colony_7 |
4 | 9/4 pSB1C3(Nega) Colony_9 | 13 | 9/4 Pcon+pSB1C3 Colony_8 |
5 | 9/4 pSB1C3(Nega) Colony_10 | 14 | 9/4 Pcon+pSB1C3 Colony_9 |
6 | 9/4 Pcon+pSB1C3 Colony_1 | 15 | 9/4 Pcon+pSB1C3 Colony_10 |
7 | 9/4 Pcon+pSB1C3 Colony_2 | 16 | 8/22 Miniprep BBa_I732095 Colony_3 |
8 | 9/4 Pcon+pSB1C3 Colony_3 | 17 | 1kb ladder |
9 | 9/4 Pcon+pSB1C3 Colony_4 |
Lane | Colony PCR ProductsⅤ |
---|---|
1 | 1kb ladder |
2 | 9/4 Pcon+pSB1C3 Colony_11 |
3 | 9/4 Negative Control |
4 | 8/22 Miniprep BBa_I732095 Colony_3 |
5 | - |
6 | - |
7 | - |
8 | - |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB2K3(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB2K3(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB2K3(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅡ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB3T5(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB3T5(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB3T5(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅢ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | 9/4 pSB4A5(E+P) | 5 |
3 | - | - |
4 | 9/4 pSB4A5(E+P) | 25 |
5 | - | - |
6 | 9/4 pSB4A5(Nega) | 10 |
Lane | Restriction Enzyme Digestion ProductⅣ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | - | - |
3 | - | - |
4 | 9/4 pSB1C3(E+P) | 10 |
5 | - | - |
6 | - | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/4 pSB2K3(E+P) | 36 | 1.25 | 0.24 |
9/4 pSB3T5(E+P) | 10 | 1.00 | -/td> |
9/4 pSB4A5(E+P) | 40 | - | 0.01 |
9/4 pSB1C3(E+P) | 75 | 1.35 | 0.14 |
9/8
Cloning PCR
Target | mamB | mamQ | mamL |
---|---|---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 | 12.5 | 12.5 |
Fw Primer/(µl) | 1.5(mamB) | 1.5(mamQ) | 1.5(mamL) |
Rv Primer/(µl) | 1.5(mamB) | 1.5(mamQ) | 1.5(mamL) |
AMB-1 Genome/(µl) | 1 | 1 | 1 |
MilliQ/(µl) | 10 | 10 | 10 |
TOTAL/(µl) | 25 | 25 | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 65℃ | 15sec | 25cycle |
Extension | 72℃ | 5min | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 4℃ | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
Pcon | 1 | pSB3T5 | 10 | 1 | 11 | 0 | 22 |
-(Negative Control) | 0 | pSB1C3 | 3 | 0 | 3 | 0 | 6 |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/8 Cloning PCR (AMB-1 mamB) |
3 | 9/8 Cloning PCR (AMB-1 mamQ) |
4 | 9/8 Cloning PCR (AMB-1 mamL) |
5 | 1kb ladder |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/8 Ligation Pcon+pSB3T5 | 3 | 30 | 33 | LB(TET) |
9/8 Ligation pSB3T5(Negative Control) | 3 | 30 | 33 | LB(TET) |
Liquid Culture
Name | medium |
---|---|
9/3 Transformation Pcon+pSB1C3 Colony_8 | Plusgrow medium(CP)*2 |
9/9
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/8 Cloning PCR (AMB-1 mamB) | 165 | 1.54 | 1.57 |
9/8 Cloning PCR (AMB-1 mamQ) | 250 | 1.69 | 1.92 |
9/8 Cloning PCR (AMB-1 mamL) | 190 | 1.56 | 1.79 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/8 Liquid Culture Pcon+pSB1C3 | 90 | 1.65 | 1.17 |
Colony PCR
NameⅠ |
---|
- |
9/8 Transformation Pcon+pSB3T5 Colony_1 |
9/8 Transformation Pcon+pSB3T5 Colony_2 |
9/8 Transformation Pcon+pSB3T5 Colony_3 |
9/8 Transformation Pcon+pSB3T5 Colony_4 |
9/8 Transformation Pcon+pSB3T5 Colony_5 |
9/8 Transformation pSB3T5(Nega) Colony_1 |
Negative control |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/8 Colony PCR Pcon+pSB3T5 Colony_1 |
3 | 9/8 Colony PCR Pcon+pSB3T5 Colony_2 |
4 | 9/8 Colony PCR Pcon+pSB3T5 Colony_3 |
5 | 9/8 Colony PCR Pcon+pSB3T5 Colony_4 |
6 | 9/8 Colony PCR Pcon+pSB3T5 Colony_5 |
7 | 9/8 Colony PCR pSB3T5(Nega) Colony_1 |
8 | 9/8 Colony PCR Nega |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Pst1/(µl) | Spe1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
9/9 Miniprep Pcon+pSB1C3 | 22 | 1 | 1 | 3(H) | 3 | 30 |
9/9 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
8/2 Miniprep Pcon Colony_4 | 14 | 1 | 1 | 3(H) | 11 | 30 |
8/2 Miniprep Pcon Colony_4(Nega) | 1 | 0 | 0 | 1(H) | 8 | 10 |
9/10
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/10 Digestion Pcon+pSB1C3(S+P) | - |
4 | - | - |
5 | 9/10 Digestion Pcon+pSB1C3(Nega) | - |
6 | - | - |
7 | Pcon(X+P) | - |
8 | - | - |
9 | Pcon(Nega) | - |
10 | 1kb ladder | - |
11 | - | - |
PCR
Target | E+X+RBS+mamB+S | X+RBS+mamL+His+S+P | X+RBS+mamQ+His+S+P |
---|---|---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 | 12.5 | 12.5 |
Fw Primer/(µl) | 0.75(E+X+RBS+mamB) | 0.75(X+RBS+mamL) | 0.75(X+RBS+mamQ) |
Rv Primer/(µl) | 0.75(S+mamB) | 0.75(P+S+His+mamL) | 0.75(P+S+His+mamQ) |
9/9 DNA Purification Product/(µl) | Trace | Trace | Trace |
MilliQ/(µl) | 11 | 11 | 11 |
TOTAL/(µl) | 25 | 25 | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 60℃ | 15sec | 25cycle |
Extension | 72℃ | 15sec | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
Electrophoresis
Lane | Cloning PCR Products |
---|---|
1 | 1kb ladder |
2 | 9/10 PCR E+X+RBS+mamB+S(922bp) |
3 | 9/10 PCR X+RBS+mamL+His+S+P(340bp) |
4 | - |
5 | 1kb ladder |
6 | 9/10 PCR X+RBS+mamQ+His+S+P(953bp) |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/10 PCR E+X+RBS+mamB+S | 200 | 1.84 | 2.15 |
9/10 PCR X+RBS+mamL+His+S+P | 120 | 1.69 | 1.84 |
9/10 PCR X+RBS+mamQ+His+S+P | 200 | 1.70 | 2.16 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|
9/10 PCR E+X+RBS+mamB+S | 10 | 1 | 1 | 3(H) | 15 | 30 |
9/10 PCR X+RBS+mamL+His+S+P | 16.7 | 1 | 1 | 3(H) | 8.3 | 30 |
9/10 PCR X+RBS+mamQ+His+S+P | 10 | 1 | 1 | 3(H) | 15 | 30 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/10 DNA Purification mamQ | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
9/10 DNA Purification mamL | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
9/10 DNA Purification mamB | 1 | YCplac111 | 1 | 1 | 5 | 2 | 10 |
Control | 0 | YCplac111 | 1 | 1 | 5 | 2 | 9 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/10 Ligation mamQ+YCplac111 | - | - | - | - |
9/10 Ligation mamL+YCplac111 | - | - | - | - |
9/10 Ligation mamB+YCplac111 | - | - | - | - |
9/11
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/10 Digestion mamB(X+P) | 65 | 1.68 | 0.51 |
9/10 Digestion mamL(X+P) | 30 | 1.95 | 0.81 |
9/10 Digestion mamQ(X+P) | 60 | 1.65 | 1.22 |
Electrophoresis
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Lane | Colony PCR Products |
---|---|
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
- | - | - | - | - | - | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/11 Ligation mamL | 2 | 10 | 12 | - |
9/11 Ligation mamQ | 1 | 5 | 6 | - |
Liquid Culture
Name | medium |
---|---|
9/8 Master Pcon+pSB1C3 Colony_3 | Plusgrow medium(CP) |
9/10 Transformation mamL+YCplac111 | Plusgrow medium(AMP) |
9/10 Transformation mamQ+YCplac111 | Plusgrow medium(AMP) |
9/12
Colony PCR
NameⅠ |
---|
Electrophoresis
Lane | Colony PCR Products |
---|---|
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/11 Liquid Culture Pcon+pSB1C3 | 110 | 1.83 | 2.63 |
9/11 Liquid Culture mamL+YCplac111 | 300 | 1.75 | 2.38 |
9/11 Liquid Culture mamQ+YCplac111 | 160 | 1.81 | 2.37 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Pst1/(µl) | Spe1/(µl) | Buffur/(µl) | BSA | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|
9/12 Miniprep mamL+YCplac111 | 6.7 | 1 | 1 | 0 | 3(H) | 3 | 15.3 | 30 |
9/12 Miniprep mamQ+YCplac111 | 12.5 | 1 | 1 | 0 | 3(H) | 3 | 9.5 | 30 |
9/12 Miniprep Pcon+pSB1C3 | 18.1 | 0 | 1 | 1 | 3(H) | 0 | 6.9 | 30 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/12 Digestion mamB(E+S) | 3 | 9/8 Digestion pSB1C3(E+S) | 1 | 1 | 5 | 0 | 10 |
9/10 mamB | 0.5 | YCplac111 | 1 | 1 | 5 | 2.5 | 10 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB(E+S) | 50 | 1.75 | 2.04 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/12 Ligation mamB+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/12 Ligation mamB+YCplac111 | 1 | 10 | 11 | LB(AMP) |
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/11 Transformation mamL+pSB1A2 Colony_1 | 9/11 Transformation mamL+pSB1A2 Colony_9 |
9/11 Transformation mamL+pSB1A2 Colony_2 | 9/11 Transformation mamL+pSB1A2 Colony_10 |
9/11 Transformation mamL+pSB1A2 Colony_3 | 9/11 Transformation mamQ+pSB1A2 Colony_1 |
9/11 Transformation mamL+pSB1A2 Colony_4 | 9/11 Transformation mamQ+pSB1A2 Colony_2 |
9/11 Transformation mamL+pSB1A2 Colony_5 | 9/11 Transformation mamQ+pSB1A2 Colony_3 |
9/11 Transformation mamL+pSB1A2 Colony_6 | 9/11 Transformation mamQ+pSB1A2 Colony_4 |
9/11 Transformation mamL+pSB1A2 Colony_7 | 9/11 Transformation mamQ+pSB1A2 Colony_5 |
9/11 Transformation mamL+pSB1A2 Colony_8 | 9/11 Transformation mamQ+pSB1A2 Colony_6 |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Lane | Colony PCR ProductsⅠ |
---|---|---|---|
1 | 9/12 mamL+pSB1A2 Colony_1 | 10 | 9/12 mamL+pSB1A2 Colony_9 |
2 | 9/12 mamL+pSB1A2 Colony_2 | 11 | 9/12 mamL+pSB1A2 Colony_10 |
3 | 9/12 mamL+pSB1A2 Colony_3 | 12 | 9/12 mamQ+pSB1A2 Colony_1 |
4 | 9/12 mamL+pSB1A2 Colony_4 | 13 | 9/12 mamQ+pSB1A2 Colony_2 |
5 | 9/12 mamL+pSB1A2 Colony_5 | 14 | 9/12 mamQ+pSB1A2 Colony_3 |
6 | 9/12 mamL+pSB1A2 Colony_6 | 15 | 9/12 mamQ+pSB1A2 Colony_4 |
7 | 9/12 mamL+pSB1A2 Colony_7 | 16 | 9/12 mamQ+pSB1A2 Colony_5 |
8 | 9/12 mamL+pSB1A2 Colony_8 | 17 | 9/12 mamQ+pSB1A2 Colony_6 |
9 | 1kb ladder |
Colony PCR
NameⅠ |
---|
9/11 Transformation mamL+pSB1A2 Green_1 |
9/11 Transformation mamL+pSB1A2 Green_2 |
9/11 Transformation mamL+pSB1A2 Green_3 |
9/11 Transformation mamL+pSB1A2 Green_4 |
9/11 Transformation mamL+pSB1A2 Green_5 |
9/11 Transformation mamL+pSB1A2 Black_7 |
9/11 Transformation mamL+pSB1A2 Black_8 |
9/11 Transformation mamQ+pSB1A2 Black_1 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/12 mamL+pSB1A2 Green_1 |
2 | 9/12 mamL+pSB1A2 Green_2 |
3 | 9/12 mamL+pSB1A2 Green_3 |
4 | 9/12 mamL+pSB1A2 Green_4 |
5 | 9/12 mamL+pSB1A2 Green_5 |
6 | 9/12 mamL+pSB1A2 Black_7 |
7 | 9/12 mamL+pSB1A2 Black_8 |
8 | 9/12 mamQ+pSB1A2 Black_1 |
9 | 1kb ladder |
Liquid Culture
Name | medium |
---|---|
9/11 Transformation mamQ+pSB1A2 Colony_1 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_2 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_3 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_4 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_5 | Plusgrow medium(AMP) |
9/11 Transformation mamQ+pSB1A2 Colony_6 | Plusgrow medium(AMP) |
9/13
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Liquid Culture mamQ+pSB1A2 Colony_1 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_2 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_3 Error | - | - | - |
9/12 Liquid Culture mamQ+pSB1A2 Colony_4 | 80 | 2.02 | 2.76 |
9/12 Liquid Culture mamQ+pSB1A2 Colony_5 | 70 | 2.13 | 3.41 |
9/12 Liquid Culture mamQ+pSB1A2 Colony_6 | 110 | 1.96 | 1.70 |
9/12 Liquid Culture Pcon+pSB1C3 | 110 | 1.96 | 1.70 |
PCR Labeling and Sequence
Target | 9/13 mamQ+pSB1A2 Colony_4 | 9/13 mamQ+pSB1A2 Colony_5 | 9/13 mamQ+pSB1A2 Colony_6 | Pcon+pSB1A2 | 9/13 mamQ+pSB1A2 Colony_4 | 9/13 mamQ+pSB1A2 Colony_5 | 9/13 mamQ+pSB1A2 Colony_6 |
---|---|---|---|---|---|---|---|
Template/(µl) | 5 | 4 | 6 | 4 | 5 | 6 | 4 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(VF) | 0.5(VF) | 0.5(VF) | 0.5(VF) | 0.5(VR) | 0.5(VR) | 0.5(VR) |
MilliQ/(µl) | 2.75 | 1.75 | 3.75 | 3.75 | 2.75 | 1.75 | 3.75 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Target | 9/12 mamQ+YCplac111 | 9/12 mamL+YCplac111 | 9/12 mamQ+YCplac111 | 9/12 mamL+YCplac111 | 9/12 mamQ+YCplac111 |
---|---|---|---|---|---|
Template/(µl) | 3 | 1.5 | 3 | 1.5 | 3 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(M13F) | 0.5(M13F) | 0.5(M13R) | 0.5(M13R) | 0.5(seqpLQB-2) |
MilliQ/(µl) | 4.75 | 6.25 | 4.75 | 6.25 | 4.75 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/12 Digestion mamQ+YCpla111(X+P)(992bp) | - |
4 | - | - |
5 | - | - |
6 | - | - |
7 | 9/12 Digestion mamL+YCpla111(X+P)(340bp) | - |
8 | - | - |
9 | 9/12 Digestion Pcon+pSB1C3(Nega)(5600bp) | - |
10 | - | - |
11 | 9/12 Digestion Pcon+pSB1C3(S+P)(2070bp) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Digestion mamL+YCpla111(X+P) | 10 | 1.00 | 0.70 |
9/12 Digestion Pcon+pSB1C3(S+P) | 150 | 1.25 | 0.71 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | EcoR1/(µl) | Buffur/(µl) | BSA | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/13 Miniprep mamQ+pSB1A2 Colony_4 | 12.5 | 0.5 | 0 | 0.5 | 0 | 1.7(M) | 1.6 | 0 | 16.8 |
9/13 Miniprep mamQ+pSB1A2 Colony_5 | 14.3 | 0.5 | 0 | 0.5 | 0 | 1.9(M) | 1.86 | 0 | 19.06 |
9/13 Miniprep mamQ+pSB1A2 Colony_6 | 9.1 | 0.5 | 0 | 0.5 | 0 | 1.5(M) | 1.5 | 1.9 | 15 |
9/13 Miniprep mamQ+pSB1A2 Colony_6(Nega) | 3 | 0 | 0 | 0 | 0 | 0.5(M) | 0.5 | 1 | 5 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
9/13 Gel Extraction mamL(X+P) | 3 | Pcon+pSB1C3(S+P) | 1 | 1 | 5 | 0 | 10 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/12 Liquid Culture Pcon+pSB1C3 | 240 | 1.78 | 1.59 |
9/14
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 3 |
2 | - | - |
3 | 9/13 mamQ Colony_4(X+P) | 16.8 |
4 | - | - |
5 | 1kb ladder | 3 |
6 | - | - |
7 | 9/13 mamQ Colony_5(X+P) | 19.06 |
8 | - | - |
9 | 9/13 mamQ Colony_6(Nega) | 5 |
10 | - | - |
11 | 9/13 mamQ Colony_6(X+P) | 15 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB(E+S) | 4 | pSB1C3(E+S) | 3 | 1 | 8 | 0 | 16 |
mamL(X+P) | 3.3 | pSB1C3(E+S) | 0.7 | 1 | 5 | 0 | 10 |
PCR
Target | E+X+RBS+mamB+S |
---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 |
Fw Primer/(µl) | 0.75(E+X+RBS+mamB) | /tr>
Rv Primer/(µl) | 0.75(S+mamB) |
9/9 DNA Purification Product/(µl) | Trace |
MilliQ/(µl) | 11 |
TOTAL/(µl) | 25 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 5min | 1time |
Denature | 98℃ | 20sec | 25cycle |
Annealing | 60℃ | 15sec | 25cycle |
Extension | 72℃ | 15sec | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/14 Ligation Pcon+mamL+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/14 Ligation Pcon+mamL+pSB1C3(Nega) | 1 | 10 | 11 | LB(CP) |
9/14 Ligation mamB+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/15
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/14 Transformation mamB+pSB1C3 Colony_1 | 9/14 Transformation mamB+pSB1C3 Colony_9 |
9/14 Transformation mamB+pSB1C3 Colony_2 | 9/14 Transformation mamB+pSB1C3 Colony_10 |
9/14 Transformation mamB+pSB1C3 Colony_3 | 9/14 Transformation mamB+pSB1C3 Colony_11 |
9/14 Transformation mamB+pSB1C3 Colony_4 | 9/14 Transformation mamB+pSB1C3 Colony_12 |
9/14 Transformation mamB+pSB1C3 Colony_5 | 9/14 Transformation mamB+pSB1C3 Colony_13 |
9/14 Transformation mamB+pSB1C3 Colony_6 | 9/14 Transformation mamB+pSB1C3 Colony_14 |
9/14 Transformation mamB+pSB1C3 Colony_7 | 9/14 Transformation mamB+pSB1C3 Colony_15 |
9/14 Transformation mamB+pSB1C3 Colony_8 | - |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/14 mamB+pSB1C3 Colony_1 |
2 | 9/14 mamB+pSB1C3 Colony_2 |
3 | 9/14 mamB+pSB1C3 Colony_3 |
4 | 9/14 mamB+pSB1C3 Colony_4 |
5 | 9/14 mamB+pSB1C3 Colony_5 |
6 | 9/14 mamB+pSB1C3 Colony_6 |
7 | 9/14 mamB+pSB1C3 Colony_7 |
8 | 9/14 mamB+pSB1C3 Colony_8 |
9 | 1kb ladder |
10 | 9/14 mamB+pSB1C3 Colony_9 |
11 | 9/14 mamB+pSB1C3 Colony_10 |
12 | 9/14 mamB+pSB1C3 Colony_11 |
13 | 9/14 mamB+pSB1C3 Colony_12 |
14 | 9/14 mamB+pSB1C3 Colony_13 |
15 | 9/14 mamB+pSB1C3 Colony_14 |
16 | 9/14 mamB+pSB1C3 Colony_15 |
Colony PCR
NameⅠ |
---|
9/14 Transformation Pcon+mamL+SB1C3 Colony_1 |
9/14 Transformation mamB+pSB1C3 Colony_9 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
mamB+YCplac111 | 1 | 10 | 11 | LB(AMP) |
Pcon+mamL+pSB1C3 | 1 | 10 | 11 | LB(CP) |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB+pSB1C3 Colony_9 | - | - | - |
mamB+pSB1C3 Colony_10 | - | - | - |
mamB+pSB1C3 Colony_11 | - | - | - |
mamL+pSB1A2 Colony_1 | 170 | 1.74 | 1.41 |
mamL+pSB1A2 Colony_2 | 140 | 1.95 | 1.43 |
mamL+pSB1A2 Colony_3 | 135 | 1.95 | 1.60 |
mamL+pSB1A2 Colony_4 | - | - | - |
mamL+pSB1A2 Colony_5 | - | - | - |
mamL+pSB1A2 Colony_6 | - | - | - |
Liquid Culture
Name | medium |
---|---|
9/14 Transformation Pcon+mamL+pSB1C3 Colony_1 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_9 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_10 | Plusgrow medium(CP) |
9/14 Transformation mamB+pSB1C3 Colony_11 | Plusgrow medium(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | MilliQ/(µl) | Buffur/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/15 DNA Purification mamB | 25 | 1 | 0 | 1 | 0 | 0 | 0 | 3(H) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_1 | 11.8 | 0 | 1 | 0 | 1 | 3 | 10.2 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_1(Nega) | 0.6 | 0 | 0 | 0 | 0 | 1 | 8.4 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_2 | 14.3 | 0 | 1 | 0 | 1 | 3 | 7.7 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_2(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_3 | 14.8 | 0 | 1 | 0 | 1 | 3 | 7.2 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_3(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/15 Mniprep mamL+pSB1A2 Colony_4 | 13.3 | 0 | 1 | 0 | 1 | 3 | 8.7 | 3(M) | 30 |
9/15 Mniprep mamL+pSB1A2 Colony_4(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 8.3 | 1(M) | 10 |
9/13 Pcon+pSB1C3 | 20 | 0 | 0 | 1 | 1 | 0 | 5 | 3(H) | 30 |
9/13 Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 6 | 3(H) | 10 |
PCR
Target | mamB Colony_10 | mamB Colony_11 |
---|---|---|
2×PrimeSTAR Max Premix/(µl) | 25 | 25 |
Fw mamB Mutation Primer/(µl) | 1 | 1 |
Rv mamB Mutation Primer/(µl) | 1 | 1 |
9/15 Miniprep mamB+pSB1C3/(µl) | Colony_10(Trace) | Colony_11(Trace) |
MilliQ/(µl) | 23 | 23 |
TOTAL/(µl) | 50 | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 2min | 1time |
Denature | 98℃ | 10sec | 30cycle |
Annealing | 55℃ | 15sec | 30cycle |
Extension | 72℃ | 15sec | 30cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
9/16
PCR Labeling and Sequence
Target | 9/15 Pcon+mamL+pSB1C3 | 9/15 mamL+pSB1A2 Colony_1 | 9/15 mamL+pSB1A2 Colony_2 | 9/15 mamL+pSB1A2 Colony_3 | 9/15 mamL+pSB1A2 Colony_4 | 9/15 mamB+pSB1C3 Colony_9 | 9/15 mamB+pSB1C3 Colony_10 | 9/15 mamB+pSB1C3 Colony_11 |
---|---|---|---|---|---|---|---|---|
Template/(µl) | 1.8 | 2.35 | 2.9 | 3.0 | 3.0 | 1.14 | 1.2 | 1.2 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer(VF)/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 5.95 | 5.4 | 4.85 | 4.75 | 4.75 | 6.61 | 6.55 | 6.55 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Target | 9/15 Pcon+mamL+pSB1C3 | 9/15 mamL+pSB1A2 Colony_1 | 9/15 mamL+pSB1A2 Colony_2 | 9/15 mamL+pSB1A2 Colony_3 | 9/15 mamB+pSB1C3 Colony_9 | 9/15 mamB+pSB1C3 Colony_10 | 9/15 mamB+pSB1C3 Colony_11 |
---|---|---|---|---|---|---|---|
Template/(µl) | 1.8 | 2.35 | 2.9 | 3.0 | 1.14 | 1.2 | 1.2 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 | 1.75 |
Primer(VR)/(µl) | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
MilliQ/(µl) | 5.95 | 5.4 | 4.85 | 4.75 | 6.61 | 6.55 | 6.55 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 55℃ | 5sec | 30cycle |
Extension | 72℃ | 4min | 30cycle |
Final elongation | 72℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Gel Extraction
Lane | Restriction Enzyme Digestion ProductⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | 1kb ladder | - |
3 | 9/15 mamL Colony_1(X+P) | - |
4 | - | - |
5 | 9/15 mamL Colony_2(Nega) | - |
6 | - | - |
7 | 9/15 mamL Colony_2(X+P) | - |
8 | 1kb ladder | - |
9 | 1kb ladder | - |
10 | 9/15 mamL Colony_3(Nega) | - |
11 | 9/15 mamL Colony_3(X+P) | - |
Lane | Restriction Enzyme Digestion ProductⅡ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | - | - |
4 | 9/15 mamQ(X+P) | - |
5 | - | - |
6 | 9/15 mamQ(Nega) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamL Colony_1 | 45 | 1.69 | 0.60 |
mamL Colony_2 | 60 | 1.33 | 0.70 |
mamL Colony_3 | 40 | 1.76 | 0.08 |
mamQ | 65 | 1.35 | 0.83 |
Dephosphorylation
Sample/(µL) | |
---|---|
9/15 Digestion Pcon+pSB1C3(S+P) | - |
9/15 Gel Extraction Pcon+pSB1C3(S+P) | - |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 Mutation PCR mamB+pSB1C3 Colony_10 | 225 | 1.64 | 1.74 |
9/15 Mutation PCR mamB+pSB1C3 Colony_11 | 205 | 1.59 | 1.76 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 1kb ladder | - |
2 | - | - |
3 | 9/15 Digestion Pcon+pSB1C3(S+P) | - |
4 | - | - |
5 | 1kb ladder | - |
6 | - | - |
7 | 9/15 Gel Extraction Pcon+pSB1C3(S+P) | - |
8 | - | - |
9 | 1kb ladder | - |
10 | - | - |
11 | - | - |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/16 DNA Purification mamB+pSB1C3 Colony_10 | 1 | 10 | 11 | LB(CP) |
9/16 DNA Purification mamB+pSB1C3 Colony_11 | 1 | 10 | 11 | LB(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | MilliQ/(µl) | Buffur/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/15 mamQ+pSB1A2 Colony_4 | 26.7 | 0 | 2 | 0 | 2 | 6 | 17.3 | 6(M) | 60 |
9/15 mamQ+pSB1A2 Colony_4(Nega) | 0.7 | 0 | 0 | 0 | 0 | 1 | 7.3 | 1(M) | 10 |
9/15 Pcon+mamL+pSB1C3 | 15 | 0 | 0 | 2 | 2 | 0 | 35 | 6(H) | 60 |
9/15 Pcon+mamL+pSB1C3(Nega) | 0.5 | 0 | 0 | 0 | 0 | 0 | 8.5 | 1(H) | 10 |
PCR
Target | E+Pcon+X+RBS+mamB+His+S(*2) |
---|---|
2×KAPA HiFi Hotstart Ready Mix/(µl) | 12.5 |
Fw E+Pcon+X+RBS+mamB/(µl) | 0.75 |
Rv S+His+mamB/(µl) | 0.75 |
9/9 DNA Purification mamB/(µl) | Trace |
MilliQ/(µl) | 11 |
TOTAL/(µl) | 25 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 mamB+pSB1C3 Colony_9 | 350 | 1.68 | 1.81 |
9/15 mamB+pSB1C3 Colony_10 | 325 | 1.65 | 1.50 |
9/15 mamB+pSB1C3 Colony_11 | 340 | 1.67 | 1.68 |
Pcon+mamL+pSB1C3 | 220 | 1.75 | 2.09 |
9/17
Colony PCR
NameⅠ |
---|
9/16 Transformation Mutation mamB Colony_11_1 |
9/16 Transformation Mutation mamB Colony_11_2 |
9/16 Transformation Mutation mamB Colony_11_3 |
9/16 Transformation Mutation mamB Colony_11_4 |
9/16 Transformation Mutation mamB Colony_10_1 |
9/16 Transformation Mutation mamB Colony_10_2 |
9/16 Transformation Mutation mamB Colony_10_3 |
9/16 Transformation Mutation mamB Colony_10_4 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/15 Pcon+pSB1C3 Colony_3 | 110 | 1.66 | 1.48 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | 9/16 Mutation PCR Pcon+mamB+His | - |
2 | Pcon+mamL(Nega) | - |
3 | Pcon+mamL(S+P) | - |
4 | 1kb ladder | - |
5 | 9/16 Mutation PCR Pcon+mamB+His | - |
6 | - | - |
7 | mamQ+pSB1A2 Colony_4(X+P) | - |
8 | 1kb ladder | - |
9 | mamQ(Nega) | - |
10 | - | - |
11 | mamQ+pSB1A2 Colony_4(X+P) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamB+His | 245 | 1.87 | 2.10 |
mamQ+pSB1A2 Colony_4(X+P) | 35 | 1.87 | 0.580 |
Pcon+mamL(S+P) | 285 Error | 1.14 | 0.85 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamQ(X+P) | 3 | Pcon+mamL(S+P) | 1 | 1 | 5 | 0 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/17 Ligation Pcon+mamL+mamQ+pSB1C3 | 1 | 10 | 11 | LB(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Spe1/(µl) | Xba1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/17 Gel Extraction Pcon+mamB+His | 16.3 | 2 | 2 | 0 | 0 | 0 | 6(H) | 33.7 | 60 |
9/17 Gel Extraction Pcon+mamB+His(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(H) | 8 | 10 |
9/17 Miniprep Pcon+pSB1C3 | 36.4 | 0 | 2 | 0 | 2 | 0 | 6(H) | 13.6 | 60 |
9/17 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(H) | 8 | 10 |
Liquid Culture
Name | medium |
---|---|
Mutation mamB Colony_10_3 | Plusgrow medium(CP) |
Mutation mamB Colony_10_4 | Plusgrow medium(CP) |
Mutation mamB Colony_11_3 | Plusgrow medium(CP) |
Mutation mamB Colony_11_4 | Plusgrow medium(CP) |
mamQ+pSB1A2 Colony_4 | Plusgrow medium(AMP)*2 |
Pcon+mamL Colony_1 | Plusgrow medium(CP)*3.5 |
9/18
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Liquid Culture Mutation mamB Colony_10_3 | 355 | 1.69 | 2.02 |
9/17 Liquid Culture Mutation mamB Colony_10_4 | 265 | 1.52 | 1.55 |
9/17 Liquid Culture Mutation mamB Colony_11_3 | 355 | 1.62 | 1.77 |
9/17 Liquid Culture Mutation mamB Colony_11_4 | 250 | 1.62 | 1.51 |
9/17 Liquid Culture mamQ+pSB1A2 Colony_4 | 290 | 1.41 | 1.10 |
9/17 Liquid Culture Pcon+mamL+pSB1C3 Colony_1 | 85 | 1.47 | 1.56 |
PCR Labeling and Sequence
Target | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 |
---|---|---|---|---|---|---|---|---|
Template/(µl) | 1.1 | 1.5 | 1.1 | 1.6 | 1.1 | 1.5 | 1.1 | 1.6 |
Big dye/(µl) | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
5×Buffer/(µl) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Primer/(µl) | 0.16(VF) | 0.16(VF) | 0.16(VF) | 0.16(VF) | 0.16(VR) | 0.16(VR) | 0.16(VR) | 0.16(VR) |
MilliQ/(µl) | 5.74 | 5.34 | 5.74 | 5.24 | 5.74 | 5.34 | 5.74 | 5.24 |
TOTAL/(µl) | 10 | 10 | 10 | 10 | 10 | 10 | 10 | 10 |
Target | 9/18 Miniprep Mutation mamB Colony_10_3 | 9/18 Miniprep Mutation mamB Colony_10_4 | 9/18 Miniprep Mutation mamB Colony_11_3 | 9/18 Miniprep Mutation mamB Colony_11_4 |
---|---|---|---|---|
Template/(µl) | 1.1 | 1.5 | 1.1 | 1.6 |
Big dye/(µl) | 2 | 2 | 2 | 2 |
5×Buffer/(µl) | 1 | 1 | 1 | 1 |
Primer/(µl) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) | 0.16(pQLB seq_2) |
MilliQ/(µl) | 5.74 | 5.34 | 5.74 | 5.24 |
TOTAL/(µl) | 10 | 10 | 10 | 10 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 50℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Colony PCR
NameⅠ | NameⅡ |
---|---|
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_1 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_9 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_2 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_10 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_3 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_11 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_4 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_12 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_5 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_13 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_6 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_14 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_7 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_15 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_8 | 9/17 Transformation Pcon+mamL+mamQ+pSB1C3 Colony_16 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_1 |
2 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_2 |
3 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_3 |
4 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_4 |
5 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_5 |
6 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_6 |
7 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_7 |
8 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_8 |
9 | 1kb ladder |
10 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_9 |
11 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_10 |
12 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_11 |
13 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_12 |
14 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_13 |
15 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_14 |
16 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_15 |
17 | 9/18 Pcon+mamL+mamQ+pSB1C3 Colony_16 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Digestion Pcon+mamB+His(E+S) | 165 | - | - |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 1kb ladder | - |
3 | 9/17 Digestion Pcon+pSB1C3(Nega) | - |
4 | 9/17 Digestion Pcon+pSB1C3(S+P) | - |
5 | - | - |
6 | - | - |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | - | - |
3 | 1kb ladder | - |
4 | 9/17 Digestion Pcon+pSB1C3(S+P) | - |
5 | - | - |
6 | - | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/17 Digestion Pcon+pSB1C3 | - | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 10*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamQ(X+P) | 6 | 9/18 Gel Extraction Pcon+pSB1C3(S+P) | Trace | 0.5 | 1 | 2.5 | 10 |
9/18 DNA Purification Pcon+mamB+His(E+S) | 5 | 9/14 pSB3T5(E+S) | 2 | 0.5 | 1 | 1.5 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/18 Ligation Pcon+mamQ+pSB1C3 | 1 | 10 | 11 | LB(CP) |
9/18 Ligation Pcon+mamB+His+pSB3T5 | 1 | 10 | 11 | LB(TET) |
Liquid Culture
Name | medium |
---|---|
pSB3T5 | Plusgrow medium(TET)*2 |
9/17 Transformation Pcon+mamL+mamQ+pSB1C3 | Plusgrow medium(CP) |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/18 Miniprep Mutation mamB Colony_10_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_10_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_10_4 | 15.1 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 52.1 | 80 |
9/18 Miniprep Mutation mamB Colony_10_4(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_11_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_11_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_11_4 | 16 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 51.2 | 80 |
9/18 Miniprep Mutation mamB Colony_11_4(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep mamQ+pSB1A2 | 34.5 | 0 | 5 | 0 | 5 | 2 | 20(D) | 133.5 | 200 |
9/18 Miniprep mamQ+pSB1A2(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/17 Miniprep Pcon+pSB1C3 | 40 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 27.2 | 80 |
9/17 Miniprep Pcon+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
9/18 Miniprep Pcon+mamL+pSB1C3 | 47 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 20.2 | 80 |
9/18 Miniprep Pcon+mamL+pSB1C3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
9/19
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/18 Liquid Culture pSB3T5 | 115 | 1.52 | 1.22 |
9/18 Liquid Culture Pcon+mamL+mamQ+pSB1C3 | 75 | 1.59 | 1.20 |
PCR Labeling and Sequence
Target | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 |
---|---|---|---|---|
Template/(µl) | 3.5 | 3.5 | 3.5 | 3.5 |
Big dye/(µl) | 0.5 | 0.5 | 0.5 | 0.5 |
5×Buffer/(µl) | 1.75 | 1.75 | 1.75 | 1.75 |
Primer/(µl) | 0.5(VF) | 0.5(VR) | 0.5(seq_1) | 0.5(seq_2) |
MilliQ/(µl) | 4.25 | 4.25 | 4.25 | 4.25 |
TOTAL/(µl) | 10.5 | 10.5 | 10.5 | 10.5 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 96℃ | 2min | 1time |
Denature | 96℃ | 10sec | 30cycle |
Annealing | 50℃ | 5sec | 30cycle |
Extension | 60℃ | 4min | 30cycle |
Final elongation | 4℃ | 1min | 1time |
Final hold | 4℃ | - | - |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | - | - |
3 | 9/18 Digestion Mutation mamB Colony_10_3(X+P) | 40 |
4 | 9/18 Digestion Mutation mamB Colony_10_3(Nega) | 10 |
5 | 1kb ladder | - |
6 | - | - |
7 | 9/18 Digestion Mutation mamB Colony_10_3(X+P) | 40 |
8 | - | - |
9 | 1kb ladder | - |
10 | 9/18 Digestion Mutation mamB Colony_10_4(Nega) | 10 |
11 | 9/18 Digestion Mutation mamB Colony_10_4(X+P) | 40 |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | 9/18 Digestion mamQ+pSB1A2(X+P) | 200 |
2 | - | - |
3 | - | - |
4 | - | - |
5 | - | - |
6 | - | - |
Lane | SampleⅢ | Volume/(µl) |
---|---|---|
1 | 100b ladder | - |
2 | 9/18 Digestion Pcon+pSB1C3(Nega) | 10 |
3 | 9/18 Digestion Pcon+pSB1C3(S+P) | 80 |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB Colony_10_3(X+P) | - | - | - |
mamB Colony_10_4(X+P) | - | - | - |
mamQ+pSB1A2(X+P) | - | - | - |
Pcon+pSB1C3(S+P) | - | - | - |
Colony PCR
NameⅠ |
---|
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5 |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | - |
3 | Pcon+mamQ+pSB1C3 Colony_1 |
4 | Pcon+mamQ+pSB1C3 Colony_2 |
5 | Pcon+mamQ+pSB1C3 Colony_3 |
6 | Pcon+mamQ+pSB1C3 Colony_4 |
7 | Pcon+mamQ+pSB1C3 Colony_5 |
8 | - |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 34.7 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 32.5 | 80 |
9/19 Miniprep pSB3T5 | 53.3 | 2 | 0 | 2 | 0 | 0.8 | 8(B) | 14 | 80 |
9/19 Miniprep pSB3T5(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(B) | 8 | 10 |
PCR
Target | Pcon+mamB+His |
---|---|
KOD Plus/(µl) | 1 |
10×Buffer/(µl) | 5 |
2mM dNTPS/(µl) | 5 |
25mM MgSO4/(µl) | 3 |
Fw Primer(E+Pcon+X+RBS+mamB)/(µl) | 2 |
Rv Primer(S+His+mamB)/(µl) | 2 |
Template/(µl) | 0.5 |
MilliQ/(µl) | 31.5 |
Total/(µl) | 50 |
Steps | Temparature | Time | cycle |
---|---|---|---|
Pre Denature | 98℃ | 2min | 1time |
Denature | 98℃ | 10sec | 25cycle |
Annealing | 55℃ | 15sec | 25cycle |
Extension | 72℃ | 1min | 25cycle |
Final elongation | 72℃ | 5min | 1time |
Final hold | 12℃ | - | - |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/18 Digestion mamL+pSB1C3(S+P) | 55 | 1.66 | 1.66 |
9/19 PCR Pcon+mamB+His | 150 | 1.63 | 1.52 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/19 DNA Purification Pcon+mamB+His | 20 | 1 | 0 | 1 | 0 | 0.8 | 8(B) | 49.2 | 80 |
Liquid Culture
Name | medium |
---|---|
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_1 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_2 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_3 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_4 | Plusgrow medium(TET) |
9/18 Transformation Pcon+mamB+His+pSB3T5 Colony_5 | Plusgrow medium(TET) |
Colony PCR
NameⅠ |
---|
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_1 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_2 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_3 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_4 |
9/18 Transformation Pcon+mamQ+pSB1C3 Colony_5 |
9/20
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | 100b ladder |
3 | Pcon+mamQ+pSB1C3 Colony_1 |
4 | Pcon+mamQ+pSB1C3 Colony_2 |
5 | Pcon+mamQ+pSB1C3 Colony_3 |
6 | Pcon+mamQ+pSB1C3 Colony_4 |
7 | Pcon+mamQ+pSB1C3 Colony_5 |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_3 | - | - | - |
9/19 Liquid Culture Pcon+mamQ+pSB1C3 Colony_5 | - | - | - |
Colony PCR
NameⅠ |
---|
Pcon+mamB+His+pSB3T5 Colony_1(VF+VR) |
Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR) |
Electrophoresis
Lane | Colony PCR ProductsⅠ |
---|---|
1 | - |
2 | 100b ladder |
3 | 100b ladder |
4 | Pcon+mamB+His+pSB3T5 Colony_1(VF+VR) |
5 | Pcon+mamB+His+pSB3T5 Colony_1(seq_4+VR) |
6 | 100b ladder |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|
9/18 Miniprep Mutation mamB Colony_10_3 | 11.2 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 80 |
9/18 Miniprep Mutation mamB Colony_10_3(Nega) | 1 | 0 | 0 | 0 | 0 | 0 | 1(D) | 8 | 10 |
9/18 Miniprep Mutation mamB Colony_10_4 | 15.1 | 0 | 2 | 0 | 2 | 0.8 | 8(D) | 56 | 83.9 |
9/18 Miniprep Mutation mamB Colony_10_4(Nega) | 1 | 1 | 0 | 1 | 0 | 0 | 1(D) | 8 | 10 |
Gel Extraction
Lane | SampleⅠ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | Digestion Mutation mamB Colony_10_3(X+P) | - |
4 | - | - |
5 | - | - |
6 | - | - |
7 | Digestion Mutation mamB Colony_11_3(X+P) | - |
8 | Digestion Mutation mamB Colony_11_3(Nega) | - |
9 | 1kb ladder | - |
10 | - | - |
11 | Digestion Mutation mamB Colony_11_3(X+P) | - |
Lane | SampleⅡ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | 9/19 Digestion pSB3T5(Nega) | - |
4 | 9/19 Digestion pSB3T5(E+S) | - |
Lane | SampleⅢ | Volume/(µl) |
---|---|---|
1 | - | - |
2 | 100b ladder | - |
3 | Digestion Mutation mamB Colony_11_4(X+P) | - |
4 | Digestion Mutation mamB Colony_11_4(Nega) | - |
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
mamB Colony_10_3(X+P) | 60 | - | - |
mamB Colony_11_3(X+P) | 85 | 1.38 | 2.04 |
mamB Colony_11_4(X+P) | 60 | 0.58 | 2.32 |
pSB3T5(E+S) | 70 | 0.44 | 2.04 |
DNA Purification
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamL+mamQ(S+P) | - | - | - |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 2*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB Colony_10_3(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_10_4(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_11_3(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
mamB Colony_11_4(X+P) | 1.7 | Pcon+mamL+mamQ(S+P) | 2.3 | 1 | 5 | 0 | 10 |
pSB3T5(E+S) | 1.4 | Pcon+mamB+His(E+S) | 2.6 | 1 | 5 | 0 | 10 |
Transformation
Sample/(µL) | CompetentCells/(µl) | Total/(µl) | Medium | |
---|---|---|---|---|
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_3 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_10_4 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_3 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamL+mamQ+mamB Colony_11_4 | 1 | 10 | 11 | LB(CP) |
9/20 Ligation Pcon+mamB+His | 1 | 10 | 11 | LB(TET) |
9/22
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8 |
NameⅤ | NameⅥ |
---|---|
9/20 Transformation Pcon+mamB+His Colony_1 | 9/19 Transformation Pcon+mamB+His Colony_1 |
9/20 Transformation Pcon+mamB+His Colony_2 | 9/19 Transformation Pcon+mamB+His Colony_2 |
9/20 Transformation Pcon+mamB+His Colony_3 | 9/19 Transformation Pcon+mamB+His Colony_3 |
9/20 Transformation Pcon+mamB+His Colony_4 | - |
9/20 Transformation Pcon+mamB+His Colony_5 | - |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Colony PCR ProductsⅡ |
---|---|---|
1 | Pcon+mamL+mamQ+mamB Colony_10_3_1 | Pcon+mamL+mamQ+mamB Colony_11_3_1 |
2 | Pcon+mamL+mamQ+mamB Colony_10_3_2 | Pcon+mamL+mamQ+mamB Colony_11_3_2 |
3 | Pcon+mamL+mamQ+mamB Colony_10_3_3 | Pcon+mamL+mamQ+mamB Colony_11_3_3 |
4 | Pcon+mamL+mamQ+mamB Colony_10_3_4 | Pcon+mamL+mamQ+mamB Colony_11_3_4 |
5 | Pcon+mamL+mamQ+mamB Colony_10_3_5 | Pcon+mamL+mamQ+mamB Colony_11_3_5 |
6 | Pcon+mamL+mamQ+mamB Colony_10_3_6 | Pcon+mamL+mamQ+mamB Colony_11_3_6 |
7 | Pcon+mamL+mamQ+mamB Colony_10_3_7 | Pcon+mamL+mamQ+mamB Colony_11_3_7 |
8 | Pcon+mamL+mamQ+mamB Colony_10_3_8 | Pcon+mamL+mamQ+mamB Colony_11_3_8 |
9 | 100b ladder | 100b ladder |
10 | Pcon+mamL+mamQ+mamB Colony_10_4_1 | Pcon+mamL+mamQ+mamB Colony_11_4_1 |
11 | Pcon+mamL+mamQ+mamB Colony_10_4_2 | Pcon+mamL+mamQ+mamB Colony_11_4_2 |
12 | Pcon+mamL+mamQ+mamB Colony_10_4_3 | Pcon+mamL+mamQ+mamB Colony_11_4_3 |
13 | Pcon+mamL+mamQ+mamB Colony_10_4_4 | Pcon+mamL+mamQ+mamB Colony_11_4_4 |
14 | Pcon+mamL+mamQ+mamB Colony_10_4_5 | Pcon+mamL+mamQ+mamB Colony_11_4_5 |
15 | Pcon+mamL+mamQ+mamB Colony_10_4_6 | Pcon+mamL+mamQ+mamB Colony_11_4_6 |
16 | Pcon+mamL+mamQ+mamB Colony_10_4_7 | Pcon+mamL+mamQ+mamB Colony_11_4_7 |
17 | Pcon+mamL+mamQ+mamB Colony_10_4_8 | Pcon+mamL+mamQ+mamB Colony_11_4_8 |
Ligation
Insert/(µL) | Vector/(µL) | T4 Ligase/(µl) | 10*Buffer/(µl) | MilliQ/(µl) | Total/(µl) | ||
---|---|---|---|---|---|---|---|
mamB Colony_10_3(X+P) | 1 | Pcon+mamL+mamQ(S+P) | 7.5 | 0.5 | 1 | 0 | 10 |
Restriction Enzyme Digestion
Sample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | BSA | Buffur/(µl) | CLAP/(µl) | MilliQ/(µl) | TOTAL/(µl) |
---|---|---|---|---|---|---|---|---|---|---|
9/19 Miniprep Pcon+mamL+mamQ+pSB1C3 | 34.8 | 0 | 0 | 2 | 2 | 0.8 | 8(B) | 1 | 31.4 | 80 |
Colony PCR
NameⅠ | NameⅡ | NameⅢ | NameⅣ |
---|---|---|---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_1 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_1 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_2 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_3 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_3 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_4 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_4 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_5 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_5 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_6 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_6 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_7 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_7 |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_10_4_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_8 | 9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_4_8 |
NameⅤ |
---|
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R) |
9/20 Transformation Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R) |
Electrophoresis
Lane | Colony PCR ProductsⅠ | Colony PCR ProductsⅡ | Colony PCR ProductsⅢ |
---|---|---|---|
1 | Pcon+mamL+mamQ+mamB Colony_10_3_1 | Pcon+mamL+mamQ+mamB Colony_11_3_1 | - |
2 | Pcon+mamL+mamQ+mamB Colony_10_3_2 | Pcon+mamL+mamQ+mamB Colony_11_3_2 | - |
3 | Pcon+mamL+mamQ+mamB Colony_10_3_3 | Pcon+mamL+mamQ+mamB Colony_11_3_3 | - |
4 | Pcon+mamL+mamQ+mamB Colony_10_3_4 | Pcon+mamL+mamQ+mamB Colony_11_3_4 | - |
5 | Pcon+mamL+mamQ+mamB Colony_10_3_5 | Pcon+mamL+mamQ+mamB Colony_11_3_5 | - |
6 | Pcon+mamL+mamQ+mamB Colony_10_3_6 | Pcon+mamL+mamQ+mamB Colony_11_3_6 | - |
7 | Pcon+mamL+mamQ+mamB Colony_10_3_7 | Pcon+mamL+mamQ+mamB Colony_11_3_7 | - |
8 | Pcon+mamL+mamQ+mamB Colony_10_3_8 | Pcon+mamL+mamQ+mamB Colony_11_3_8 | - |
9 | 100b ladder | 100b ladder | 100b ladder |
10 | Pcon+mamL+mamQ+mamB Colony_10_4_1 | Pcon+mamL+mamQ+mamB Colony_11_4_1 | 9/19 Transformation Pcon+mamB+His Colony_1 |
11 | Pcon+mamL+mamQ+mamB Colony_10_4_2 | Pcon+mamL+mamQ+mamB Colony_11_4_2 | 9/19 Transformation Pcon+mamB+His Colony_2 |
12 | Pcon+mamL+mamQ+mamB Colony_10_4_3 | Pcon+mamL+mamQ+mamB Colony_11_4_3 | 9/19 Transformation Pcon+mamB+His Colony_3 |
13 | Pcon+mamL+mamQ+mamB Colony_10_4_4 | Pcon+mamL+mamQ+mamB Colony_11_4_4 | Pcon+mamL+mamQ+mamB Colony_11_3_2(VF+VR) |
14 | Pcon+mamL+mamQ+mamB Colony_10_4_5 | Pcon+mamL+mamQ+mamB Colony_11_4_5 | Pcon+mamL+mamQ+mamB Colony_11_3_2(seq_4+VR) |
15 | Pcon+mamL+mamQ+mamB Colony_10_4_6 | Pcon+mamL+mamQ+mamB Colony_11_4_6 | Pcon+mamL+mamQ+mamB Colony_11_3_2(L_F+B_R) |
16 | Pcon+mamL+mamQ+mamB Colony_10_4_7 | Pcon+mamL+mamQ+mamB Colony_11_4_7 | Pcon+mamL+mamQ+mamB Colony_11_3_2(Q_F+B_R) |
17 | Pcon+mamL+mamQ+mamB Colony_10_4_8 | Pcon+mamL+mamQ+mamB Colony_11_4_8 | - |
Miniprep
DNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
Pcon+mamQ+pSB1C3 Colony_3 | 85 | 1.51 | 0.79 |
Pcon+mamQ+pSB1C3 Colony_5 | 60 | 1.94 | 1.12 |