Team:UChicago/Fluctuation Analysis

From 2014.igem.org

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}
}
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input {
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table {
-
    
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   width: 100%;
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}
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table, th, td {
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  border-collapse: collapse;
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  border: 1px solid black;
}
}
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<div id="maincontent">
<div id="maincontent">
-
<input type="text" id="text" style="width: 150px;">
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<input type="text" id="text" style="width: 150px;"/>
<br/>
<br/>
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<input type="button" value="Click Me" id="button">​
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<input type="button" value="Click Me" id="button"/>​
<br/>
<br/>
<h2>Small FALCOR-like program for mutational analysis</h2>
<h2>Small FALCOR-like program for mutational analysis</h2>
 +
<input type="checkbox" id="debugb"><label for="debugb">Debug mode</label></input>
 +
<button type="button">Add sample data</button>
<div id="inputs">
<div id="inputs">
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<h3>Mutants</h3>
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<h4>Mutants</h4>
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<textarea id="mutin">Paste here</textarea>
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<textarea id="mutin" placeholder="Paste data here"></textarea>
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<h3>Viable Cells</h3>
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<h4>Viable Cells</h4>
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<textarea id="tcellsin">Paste here</textarea>
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<textarea id="tcellsin" placeholder="Paste data here"></textarea>
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<button id="calcb" type="button">Calculate</button>
</div>
</div>
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<h2>Results</h2>
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<div id="results">
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<div id="outputs">
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<h3>Results</h3>
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<dl>
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<table>
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<dt>Mean mutational frequency</dt>
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<tr>
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<dd id="mmutfreq"><dd>
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  <th>Mean Mutational Events</th>
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  <th>95% CI</th>
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  <th>Mutation Rate</th>
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  <th>95% CI</th>
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</tr>
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<tr>
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  <td id="mmutev">1.4</td>
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  <td id="mutevci">.1</td>  
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  <td id="mutrate">10<sup>-3</sup></td>
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  <td id="mutrateci">10<sup>-4</sup></td>
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</tr>
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</table>
</div>
</div>
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         text.val(text.val() + ' after clicking');     
         text.val(text.val() + ' after clicking');     
     });
     });
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});
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$(document).ready(function() {
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  $('#calcb').click(function() {
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    var mutcounts = $.map($('#mutin').val().split(), parseInt);
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    if (mutcounts.some(isNaN)) {
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      alert('invalid value of mutant amount given');
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      return;
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    }
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    var viablescounts = $.map($('#tcellsin').val().split(),parseInt);
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    if (viablescounts.some(isNaN)) {
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      alert('invalid value of number of viable cells');
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      return;
 +
    }
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    if (mutcounts.length < 1 || viablescounts.length < 1) {
 +
      alert('must have at least one data member in each input');
 +
      return;
 +
    }
 +
    if (mutcounts.length != viablescounts.length) {
 +
      alert('must have same number of data items in all inputs');
 +
      return;
 +
    }
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    var tmutplates = 0;
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    for (var i = 0; i < mutcounts.length; i++) {
 +
      if (mutcounts[i] > 0) tmutplates++;
 +
    }
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    var hitspercell = Math.log(mutcounts.length / tmutplates);
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    var mutrate = hitspercell / viablescounts[0];
 +
    $('#mutrate').html(mutrate.toString());
 +
  });
});
});
</script>
</script>

Latest revision as of 02:52, 26 August 2014


​

Small FALCOR-like program for mutational analysis

Mutants

Viable Cells

Results

Mean Mutational Events 95% CI Mutation Rate 95% CI
1.4 .1 10-3 10-4

Retrieved from "http://2014.igem.org/Team:UChicago/Fluctuation_Analysis"