Team:UChicago/Fluctuation Analysis

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(Difference between revisions)

Revision as of 02:46, 26 August 2014

Small FALCOR-like program for mutational analysis

<

Mutants

<h4>Viable Cells</h4>
<textarea id="tcellsin" placeholder="Paste data here"/>
<button id="calcb" type="button">Calculate</button>
</div>
<div id="results">
<h3>Results</h3>
<table>
<tr>
  <th>Mean Mutational Events</th>
  <th>95% CI</th>
  <th>Mutation Rate</th>
  <th>95% CI</th>
</tr>
<tr>
  <td id="mmutev">1.4</td>
  <td id="mutevci">.1</td> 
  <td id="mutrate">10<sup>-3</sup></td>
  <td id="mutrateci">10<sup>-4</sup></td>
</tr>
</table>
</div>

<script type="text/javascript">
$(function () {
    $('#button').click(function () {
        var text = $('#text');
        text.val(text.val() + ' after clicking');    
    });
});
$(document).ready(function() {
  $('#calcb').click(function() {
    var mutcounts = $.map($('#mutin').val().split(), parseInt);
    if (mutcounts.some(isNaN)) {
      alert('invalid value of mutant amount given');
      return;
    }
    var viablescounts = $.map($('#tcellsin').val().split(),parseInt);
    if (viablescounts.some(isNaN)) {
      alert('invalid value of number of viable cells');
      return;
    }
    if (mutcounts.length < 1 || viablescounts.length < 1) {
      alert('must have at least one data member in each input');
      return;
    }
    if (mutcounts.length != viablescounts.length) {
      alert('must have same number of data items in all inputs');
      return;
    }
    var tmutplates = 0;
    for (var i = 0; i < mutcounts.length; i++) {
      if (mutcounts[i] > 0) tmutplates++;
    }
    var hitspercell = Math.log(mutcounts.length / tmutplates);
    var mutrate = hitspercell / viablescounts[0];
    $('#mutrate').html(mutrate.toString());
  });
});
</script>
</div>

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@@ Line 30: / Line 30: @@
 <div id="inputs">
 <h4>Mutants</h4>
-<textarea id="mutin" placeholder="Paste data here/>
+<textarea id="mutin" placeholder="Paste data here"/>
 <h4>Viable Cells</h4>
 <textarea id="tcellsin" placeholder="Paste data here"/>