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Team:Paris Saclay/Notebook/August/4
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| - | Gel electrophoresis of BBa_K517003 and K762100 previously prepared | + | ===Gel electrophoresis of BBa_K517003 and K762100 previously prepared=== |
by Sean&Pierre | by Sean&Pierre | ||
Revision as of 13:53, 5 August 2014
Contents |
Monday 4th August
Lab Work
A - The chassis coli Odor free
Striate on Dishes
by Juliette & Romain
We striated MG1655 and MG1655Z1 on LB and Kan dishes, from the striates prepared on LB dishes 1st August
C - Salicylate Inducible Suppressing System
Plasmid DNA Purification
by Eugene and Fabio
- Ligation of BBa_J61051 and BBa_K228001 made the 30th July
From Liquid Culture made the 1st August
Digestion to check
by Eugene and Fabio
In order to validate the hole Assembly Process, we did a final digestion. The samples were digested with the enzymes EcoRI and PstI, that separates the BioBrick Assembly core from theirs vectors. The graphic result of this process is shown in the next step.
Protocol:
- Add 5 μl of the plasmid to digest.
- Add 2 μl of buffer (Fast Digest Buffer 10x).
- Add 0,2 μl of enzyme EcoRI.
- Add 0,2 μl of enzyme PstI.
- Complete with 12,6μl of H2O.
- Mix gently.
- Incubate at 37°C for one hour.
Electrophoresis
In progress
Final Stock
In progress
D - Lemon scent
Gel electrophoresis of BBa_K762100
by Sean
Samples used were prepared on the 30th July.
Results
From left to right: 5 µl of BBa_K762100 + "old" Phusion enzyme, 5 µl of BBa_K762100 + "new" Phusion enzyme
Electroporation
by Terry
Strain used: DY330 containing plasmid pJBEI6409.
We had to switch the Limonen Synthase cassette with the Apramycin resistance.
The culture has been placed at 42°C for 17 min then cooled 10 min before centrifugation.
Polymerase chain reaction
by Sean & Pierre
BBa_K517003
| component | volume |
|---|---|
| H2O | 35.5μl |
| Phusion buffer 5X | 10μl |
| dNTPs | 2μl |
| iPS68bis | 1μl |
| iPS69 | 1μl |
| DNA | 1μl |
| Phusion enzyme | 0.5μl |
BBa_K762100
For this BioBrick two tubes were prepared: one with undiluted DNA and one with DNA diluted 10-1.
| component | volume |
|---|---|
| H2O | 35.5μl |
| Phusion buffer 5X | 10μl |
| dNTPs | 2μl |
| iPS66 | 1μl |
| iPS67 | 1μl |
| DNA | 1μl |
| Phusion enzyme | 0.5μl |
Tubes were placed in PCR machine with the following parameters.
| Cycle step | Temperature | Time | Cycle |
|---|---|---|---|
|
Initial denaturation |
98°C |
1 min |
1 |
| Denaturation | 98°C | 15 s | 25 - 30 |
| Annealing | 52°C | 25 s | 25 - 30 |
| Extension | 72°C | 45 s | 25-30 |
| Final extension | 72°C | 10 min | 1 |
| Final extension | 8°C | hold | 1 |
Gel electrophoresis of BBa_K517003 and K762100 previously prepared
by Sean&Pierre
Results
failure.
From left to right: 10 µl ladder, 5 µl of BBa_K762100 non diluted, 5 µl of BBa_K762100 diluted 10-1, 5 µl of BBa_K517003.
Miscellaneous
By Hoang Vu
Ethics
Well, I just got back from one month of vacation and when I came, everybody was already on lab works. So, I decided to work on ethics first. Synthetic Biology and BioArt are controversial because one is about engineering living organisms, and therefore raises economic, religious, political, moral problems; and the other is about engineering the living organisms too but it's mostly USING the living organisms to do art, to carry a message. This is how I see the essential points of our project ethical problems. But my point of view is not fixed. Maybe I'm wrong, maybe there is something that I have missed. That's why I started with a research on GMOs in general to better understand those issues. - The first trangenic pet were GloFish, "TK-1" 2003 in Taiwan - California is completely against such animals but the funny thing is that California is one of the best supporters of agricultural GMOs. So, there is the question: Why the plants and not the fish? Probably economic benefits and ethical positions are the reasons. Then, is there a hierachy of living organisms? Why? - GMOs under commercial cover raise new problems on environment and commercial rights. - Take a look at the arguments between Anti-GMO and Pro-GMO movements. The 90's context for example in Europe after food crises like the mad cow disease, contribute to the incomplete acceptance by the Europeans.
Bibliography
I worked on ethics till one of our advisors ask me: "Can you do a research on the chemical components of the lemon odor please? I need more publications on chemical characterization of limonene, citral A and B, and beta-Pinene"
Members there:
- Instructors and advisors: Alice, Solenne and Sylvie.
- Students: Eugene, Fabio, Hoang Vu, Juliette, Pierre, Romain, Sean and Terry.
