Team:UIUC Illinois/Software/Cutsultant
From 2014.igem.org
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- | < | + | <h2> Having trouble with finding the best enzymes for your cut sites? </h2> |
- | < | + | <h2>Here is our <font color= "red">Cutsultant</font> software that will potentially suggest to you the optimal enzyme! </h2> |
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- | <p><b>Description:</b> | + | <p><b><p style="font-size:15px">Description:</p></b> |
- | Currently there are few websites that give you only cut sites, however we heard that many synthetic biologists struggle with obtaining optimized enzymes | + | <p style="font-size:15px">Currently there are few websites that give you only cut sites, however we heard that many synthetic biologists struggle with obtaining optimized enzymes |
Cutsultant is a python script created to expedite the process of finding restriction enzymes that produce the most optimal digestions. Using Biopython's restriction enzyme package, as well as user-inputted sequences and available restriction enzymes Cutsultant can use one or two sequences (typically a plasmid and/or a plasmid with an insert) and generate lists of enzymes that produce an optimal cut based on a a few parameters, such as number of cuts, minimum band length, maximum band length, and differentiability of bands. </p> | Cutsultant is a python script created to expedite the process of finding restriction enzymes that produce the most optimal digestions. Using Biopython's restriction enzyme package, as well as user-inputted sequences and available restriction enzymes Cutsultant can use one or two sequences (typically a plasmid and/or a plasmid with an insert) and generate lists of enzymes that produce an optimal cut based on a a few parameters, such as number of cuts, minimum band length, maximum band length, and differentiability of bands. </p> | ||
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- | + | <p><a href="https://github.com/arudhir/Illinois-iGEM-2014">Click Here to View Our Code Repository!</a></p> | |
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Latest revision as of 03:56, 18 October 2014
Having trouble with finding the best enzymes for your cut sites?
Here is our Cutsultant software that will potentially suggest to you the optimal enzyme!
Description:
Currently there are few websites that give you only cut sites, however we heard that many synthetic biologists struggle with obtaining optimized enzymes Cutsultant is a python script created to expedite the process of finding restriction enzymes that produce the most optimal digestions. Using Biopython's restriction enzyme package, as well as user-inputted sequences and available restriction enzymes Cutsultant can use one or two sequences (typically a plasmid and/or a plasmid with an insert) and generate lists of enzymes that produce an optimal cut based on a a few parameters, such as number of cuts, minimum band length, maximum band length, and differentiability of bands.