Team:Northwestern/Safety

From 2014.igem.org

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<p>WELCOME TO iGEM 2014! </p>
 
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<p>Your team has been approved and you are ready to start the iGEM season!
 
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<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
 
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<br>
 
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<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Northwestern/Safety&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
 
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<p> Visit the <a href="https://2014.igem.org/Safety" >Safety Hub</a> to see this year's safety requirements. The Safety Hub is the central page for everything related to safety in iGEM. You can also go there to learn about general biosafety topics, and how to think about the future implications of your project.</p>
 
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<h3> Your Lab </h3>
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<i> iGEM projects involve important questions beyond the bench, for example relating to (but not limited to) ethics, sustainability, social justice, safety, security, or intellectual property rights. Articulate at least one question encountered by your team, and describe how your team considered the(se) question(s) within your project. Include attributions to all experts and stakeholders consulted.</i>
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<p> Use this section to tell us about your laboratory. Where is it located? What sort of equipment do you use every day? Have you decorated it for the summer? How do you look wearing a lab coat? Take pictures! Show off your space! </p>
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<p style="padding-top: 40px;"><span class="glyphicon glyphicon-comment"></span> Safety – We collected environmental strains and identified a problem for future iGEM teams that identify unknown strains through 16sRNA.</p>
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<img style="width: 800px;" src="https://static.igem.org/mediawiki/2014/0/0b/Lab_1.JPG"/>  
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<img style="width: 800 px;" src="https://static.igem.org/mediawiki/2014/9/9e/Lab_2.JPG"/>
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<!--
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Image:Example2_Lab_1.png|The building our lab is in!
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Image:Example2_Lab_2.png|The inside of our lab!
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Image:Example2_Lab_3.png|Team Member 3 doing an experiment
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Image:Example2_Lab_4.png|Working in biosafety cabinets
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Image:Example2_Lab_5.png|Team all gloved up and ready for work!
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Image:Example2_Lab_6.png|Equipment that we use to do SCIENCE!
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Image:Example2_Lab_7.png|We decorated this part of our lab
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<p class="lead"> A large part of our project involved looking to alternative sources for synthetic biology work – non-model strains that behave differently than E. coli that could surpass E. coli in various ways and contribute to new biotechnologies. These non-model organisms may behave better in different environments, handle certain procedures better, or be able to craft larger and more complex proteins than otherwise possible. For them to survive in the environment they must have specialized in some way and our aim was to lay the foundation to tapping into that potential.
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When we first collected our environmental samples and cultured them to create lysates, a serious question arose: what if these environmental strains we collected from the lake could kill us? This was a very real safety concern that we quickly had to solve. Luckily Sarah Steinbrook, a graduate student that monitored our progress, had encountered this problem before and introduced us to 16S ribosomal RNA gene (rDNA) amplicon analysis, the current standard approach to identifying unknown organisms.
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<a href="http://nar.oxfordjournals.org/content/41/1/e1.long">A 16S RNA paper </a>
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</p>
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<p class="lead">George Wells, a professor of Civil and Environmental Engineering at Northwestern University who also provided us with Nitrosomonas europaea samples, was able to further clarify what to do about potentially harmful strains.  If the BSL-2 strain was from a mixed culture, as ours was, then it was likely in low abundance. However, If it was an isolate,  he advised that we carefully consider whether or not it would be marginally beneficial to continue working with this strain-  and if so, to proceed in a BSL-2 laboratory.</p>
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<h3>Our Lab</h3>
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<img class="img-rounded" style="width:350px; padding-bottom: 40px;" src="https://static.igem.org/mediawiki/2014/0/0b/Lab_1.JPG"/>
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<p>Our lab was situated on the ground floor of the Technological Institute at Northwestern University's Evanston campus. Thanks to the generosity of Professor Mordacq, we were able to use the Biological Sciences Department's lab space for the entire summer and the fall. The majority of our characterization assays were done in the facilitating Tyo lab.</p>
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<img class="img-rounded" style="width:350px; padding-bottom: 40px;" src="https://static.igem.org/mediawiki/2014/9/9e/Lab_2.JPG"/>
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<p>Every morning, we convened to go over the results of the last day's experiments and discuss the next steps. This is where we had our lab meetings.</p>
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</div>
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<div class="col-md-4">
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<img class="img-rounded" style="width:350px; padding-bottom: 40px;" src="https://static.igem.org/mediawiki/2014/0/08/Lab_coat.jpg"/>
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<p>We always remember to practice meticulous lab safety!</p>
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</div>
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</div>
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<ul>
 
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<li> <b>Now :</b>  Read the <a href="https://2014.igem.org/Safety">Safety Hub </a> and learn about safety in iGEM. Ask questions by emailing safety at <i> igem DOT org </i>. </li>
 
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<li><b>Now - Jamboree:</b> Complete <b>Check-Ins</b> and receive approval before acquiring and using certain materials in your lab</li>
 
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<li><b>Now - Wiki Freeze:</b> Edit this Safety page to tell us about what you're doing</li>
 
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<li><b>June 9: </b>Submit the About Our Lab form.</li>
 
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<li><b>Let us know by June 25 </b>if you will need an extension on the Preliminary Version, or your Preliminary Version will be significantly incomplete.</li>
 
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<li><b>June 30: </b>Submit the Preliminary Version of the <b>Safety Form</b>.</li>
 
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<li>Participate in Virtual Open Office Hours to ask questions and discuss safety topics (exact date to be determined).</li>
 
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<li><b>September 1:</b> Submit the Final Version of the Safety Form.</li>
 
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<li><b>October: </b> Wiki freeze (exact date to be determined)</li>
 
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<li><b>October 30 - November 3: </b>GIANT JAMBOREE!</li>
 
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Latest revision as of 03:30, 18 October 2014

Dropdown menu from bootstrap

Safety

iGEM projects involve important questions beyond the bench, for example relating to (but not limited to) ethics, sustainability, social justice, safety, security, or intellectual property rights. Articulate at least one question encountered by your team, and describe how your team considered the(se) question(s) within your project. Include attributions to all experts and stakeholders consulted.

Safety – We collected environmental strains and identified a problem for future iGEM teams that identify unknown strains through 16sRNA.

A large part of our project involved looking to alternative sources for synthetic biology work – non-model strains that behave differently than E. coli that could surpass E. coli in various ways and contribute to new biotechnologies. These non-model organisms may behave better in different environments, handle certain procedures better, or be able to craft larger and more complex proteins than otherwise possible. For them to survive in the environment they must have specialized in some way and our aim was to lay the foundation to tapping into that potential. When we first collected our environmental samples and cultured them to create lysates, a serious question arose: what if these environmental strains we collected from the lake could kill us? This was a very real safety concern that we quickly had to solve. Luckily Sarah Steinbrook, a graduate student that monitored our progress, had encountered this problem before and introduced us to 16S ribosomal RNA gene (rDNA) amplicon analysis, the current standard approach to identifying unknown organisms. A 16S RNA paper

George Wells, a professor of Civil and Environmental Engineering at Northwestern University who also provided us with Nitrosomonas europaea samples, was able to further clarify what to do about potentially harmful strains. If the BSL-2 strain was from a mixed culture, as ours was, then it was likely in low abundance. However, If it was an isolate, he advised that we carefully consider whether or not it would be marginally beneficial to continue working with this strain- and if so, to proceed in a BSL-2 laboratory.

Our Lab

Our lab was situated on the ground floor of the Technological Institute at Northwestern University's Evanston campus. Thanks to the generosity of Professor Mordacq, we were able to use the Biological Sciences Department's lab space for the entire summer and the fall. The majority of our characterization assays were done in the facilitating Tyo lab.

Every morning, we convened to go over the results of the last day's experiments and discuss the next steps. This is where we had our lab meetings.

We always remember to practice meticulous lab safety!