Team:Paris Bettencourt/Bibliograpy

Gottfried, J. & Dolan, R., 2003. The nose smells what the eye sees: crossmodal visual facilitation of human olfactory perception. Neuron, 39, pp.375–386..

Korpi, A., Pasanen, A. & Pasanen, P., 1998. Volatile Compounds Originating from Mixed Microbial Cultures on Building Materials under Various Humidity Conditions. , 64(8), pp.2914–2919.

Kuang, S. & Zhang, T., 2014. Smelling directions: olfaction modulates ambiguous visual motion perception. Scientific reports, 4, p.5796.

Lenochová, P. et al., 2012. Psychology of fragrance use: perception of individual odor and perfume blends reveals a mechanism for idiosyncratic effects on fragrance choice. PloS one, 7(3), p.e33810. .

Li, G. & Young, K.D., 2013. Indole production by the tryptophanase TnaA in Escherichia coli is determined by the amount of exogenous tryptophan. Microbiology (Reading, England), 159(Pt 2), pp.402–10.

Weisskopf, L., 2013. The potential of bacterial volatiles for crop protection against phytophathogenic fungi. , pp.1352–1363.

Buck, L. & Axel, R., 1991. A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell, 65, pp.175–187.

Smell the Roses

Brookes, J., Hartoutsiou, F., Horsfield, a., & Stoneham, a. (2007). Could Humans Recognize Odor by Phonon Assisted Tunneling? Physical Review Letters, 98(3), 038101. doi:10.1103/PhysRevLett.98.038101

Buck, L. (2004). The search for odorant receptors. Cell, 117–120.

Callewaert, C., Buysschaert, B., Vossen, E., Fievez, V., Van de Wiele, T., & Boon, N. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of microbiological methods, 103, 6–8. doi:10.1016/j.mimet.2014.05.005

Lundström, J. N., & Olsson, M. J. (2013). Functional Neuronal Processing of Human Body Odors. Vitam Horm. NIH., 6729(10), 1–19. doi:10.1016/S0083-6729(10)83001-8.Functional

Nijland, R., & Burgess, J. (2010). Bacterial olfaction. Biotechnology journal, 9, 2–19.

Seo, H., Song, J., & Cheong, J. (2001). Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses. Proceedings of the National Academy of Sciences.

Bargmann, C.I., 2006. Comparative chemosensation from receptors to ecology. Nature, 444(7117), pp.295–301.

Baba, T. et al., 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Molecular systems biology, 2, p.2006.0008.

Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016.

Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.

Teen Spirit

Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging. Journal of investigative dermatology, 116(4), 520-524.

Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.

Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. Human molecular genetics, 7(5), 839-845.

Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin. Food and chemical toxicology, 42(10), 1619-1628.

Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from Methylophaga sp. strain SK1 and its indigo synthesis in Escherichia coli. Biochemical and biophysical research communications, 306(4), 930-936.

Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. Drug Metabolism and Disposition, 29(4), 517-521.

Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014

Bain, M. A., Faull, R., Fornasini, G., Milne, R. W., & Evans, A. M. (2006). Accumulation of trimethylamine and trimethylamine-N-oxide in end-stage renal disease patients undergoing haemodialysis. Nephrology Dialysis Transplantation, 21(5), 1300-1304.

Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme. Proceedings of the National Academy of Sciences, 109(52), 21307-21312.

Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. J. biol. Chem, 237, 1309-1313.

Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. The Clinical Biochemist Reviews, 32(1), 33.

Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, 108(43), 17791-17796.

Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans. Clinical Pharmacology & Therapeutics, 42(5), 588-594. Nagata, Y. (2003). Measurement of odor threshold by triangle odor bag method. Odor measurement review, 118-127.

Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.Toxicol In Vitro 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016

Nagata Y. 1993. Measurement of odor threshold by triangle odor bag method. In: Odor measurement review. Tokyo: Office of Odor, Noise and Vibration Environmental Management Bureau, Ministry of Environment. p 118–127.

Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. Canadian Journal of Microbiology 52(4): 357-364, 10.1139/w05-130

Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of Microbiological Methods Volume 103, 6–8

Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol. 2013 Mar;31(3):233-9. doi: 10.1038/nbt.2508. Epub 2013 Jan 29.

Gomaa AA, Klumpe HE, Luo ML, Selle K, Barrangou R, Beisel CL. Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. MBio. 2014 Jan 28;5(1):e00928-13. doi: 10.1128/mBio.00928-13.

Don't Sweat It

Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539.

Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668

Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207.

Classen, C (1994). The Cultural History of Smell. Routledge.

Chaumier Serge (2003). L'Odeur du baiser, in A Fleur de peau. Payot

Design Practice

Jaquet, C (2010). Philosophie de l'odorat. PUF.

Corbin, A (2008). Le miasme et la jonquille : L'odorat et l'imaginaire social aux XVIIIe et XIXe siècles. Champs Histoire. Flammarion.

Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012.

Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009).

Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.

Bioinformatics

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358

Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096

Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668.