Team:Paris Bettencourt/Bibliograpy

From 2014.igem.org

(Difference between revisions)
(Created page with "{{Team:Paris_Bettencourt/Menu}} <html> <style> body { width : 100%; } .background { position : relative; background : rgb(255,0,99); } #topheader { width : ...")
 
(102 intermediate revisions not shown)
Line 14: Line 14:
height : 300px;
height : 300px;
margin-top : 40px;
margin-top : 40px;
-
background-image : url("https://static.igem.org/mediawiki/2014/b/ba/Smell_of_roses.png");
+
background-image : url("https://static.igem.org/mediawiki/2014/d/dd/BiblioPB.png");
        background-size : cover;
        background-size : cover;
background-color : transparent;
background-color : transparent;
Line 30: Line 30:
font-weight : bold;
font-weight : bold;
                 margin-left : 5%;
                 margin-left : 5%;
-
}
 
-
#logoblanc {
 
-
position : absolute;
 
-
width : 100px;
 
-
height : 100px;
 
-
right : 0;
 
-
left : 0;
 
-
margin : auto;
 
-
margin-top : -50px;
 
-
background : transparent;
 
-
align : center;
 
-
z-index : 50;
 
-
display : block;
 
-
}
 
-
#logorose {
 
-
position : absolute;
 
-
width : 100px;
 
-
height : 100px;
 
-
right : 0;
 
-
left : 0;
 
-
margin : auto;
 
-
margin-top : -50px;
 
-
background : transparent;
 
-
align : center;
 
-
z-index : 50;
 
-
display : none;
 
-
}
 
-
#logo:hover #logoblanc {
 
-
}
 
-
#logo:hover #logorose {
 
}
}
p {
p {
text-align : justify;
text-align : justify;
-
text-indent : 10px;
 
background-color : transparent;
background-color : transparent;
}
}
Line 71: Line 40:
background : rgb(225,0,112);
background : rgb(225,0,112);
         }
         }
-
#headtable {
+
-
width : 92.5%;
+
.part1 {
-
height : 300px;
+
-
text-align : center;
+
-
background : rgb(225,0,112);
+
-
                margin-right : 3.75%;
+
-
                margin-left : 3.75%;
+
-
}
+
-
#headtable tr td {
+
-
width : 25%;
+
-
heigth : 100%;
+
-
color : rgb(255,255,255);
+
-
                font-size : 12px;
+
-
}
+
-
#tablelien {
+
-
width : 100%;
+
-
height : 50px;
+
-
text-align : center;
+
-
}
+
-
#tablelien tr td {
+
-
width : 20%;
+
-
height : 50px;
+
-
color : rgb(197,192,193);
+
-
                font-size : 16px;
+
-
}
+
-
#intro {
+
width : 100%;
width : 100%;
-
height : 500px;
 
display : inline-block;
display : inline-block;
}
}
-
#intro p {
+
.part1 .text1 {
display : inline-block;
display : inline-block;
vertical-align : middle;
vertical-align : middle;
Line 107: Line 51:
width : 44%;
width : 44%;
margin-left : 5%;
margin-left : 5%;
-
                 font-size : 14px;
+
                 font-size : 15px;
}
}
-
#intro img {
+
.part1 .text2 {
position : absolute;
position : absolute;
width : 44%;
width : 44%;
-
height : 400px;
 
                 left : 51%;
                 left : 51%;
-
top : 697px;
+
                margin-top : 40px;
-
background-color : rgb(197,192,193);
+
                font-size : 15px;
}
}
-
#aims {
 
-
width : 100%;
 
-
height : 500px;
 
-
display : inline-block;
 
-
}
 
-
#aims p {
 
-
display : inline-block;
 
-
vertical-align : middle;
 
-
position : relative;
 
-
width : 44%;
 
-
margin-left : 5%;
 
-
                font-size : 14px;
 
-
}
+
 
-
#aims img {
+
-
position : absolute;
+
-
width : 44%;
+
-
height : 400px;
+
-
                left : 51%;
+
-
top : 697px;
+
-
background-color : rgb(197,192,193);
+
-
}
+
-
#results {
+
-
width : 100%;
+
-
height : 500px;
+
-
display : inline-block;
+
-
}
+
-
#results p {
+
-
display : inline-block;
+
-
vertical-align : middle;
+
-
position : relative;
+
-
width : 44%;
+
-
margin-left : 5%;
+
-
                font-size : 14px;
+
-
}
+
-
#results img {
+
-
position : absolute;
+
-
width : 44%;
+
-
height : 400px;
+
-
                left : 51%;
+
-
top : 697px;
+
-
background-color : rgb(197,192,193);
+
-
}
+
-
#motivation {
+
-
width : 100%;
+
-
height : 500px;
+
-
display : inline-block;
+
-
}
+
-
#motivation p {
+
-
display : inline-block;
+
-
vertical-align : middle;
+
-
position : relative;
+
-
width : 44%;
+
-
margin-left : 5%;
+
-
                font-size : 14px;
+
-
}
+
-
#motivation img {
+
-
position : absolute;
+
-
width : 44%;
+
-
height : 400px;
+
-
                left : 51%;
+
-
top : 697px;
+
-
background-color : rgb(197,192,193);
+
-
}
+
#top {
#top {
position : fixed;
position : fixed;
right : 20px;
right : 20px;
bottom : 10px;
bottom : 10px;
-
                 width : 20px;
+
                 width : 25px;
-
                 height : 20px;
+
                 height : 25px;
z-index : 100;
z-index : 100;
}
}
Line 195: Line 76:
.nameimg {
.nameimg {
position : absolute;
position : absolute;
-
width : 200px;
+
width : 260px;
-
height : 200px;
+
margin-left : 8%;
-
margin-left : 10%;
+
                margin-top : 80px;
background : transparent;
background : transparent;
z-index : 60;
z-index : 60;
}
}
-
        .text1 {
+
   
-
              text-align : justify;
+
-
              margin-left : 5%;
+
-
              margin-right : 5%;
+
-
        }
+
-
        #headtable tr td b {
+
-
              font-size : 18px;
+
-
        }
+
</style>
</style>
<body>
<body>
-
<p id=top><a href="#topheader"><img src="https://static.igem.org/mediawiki/2014/d/d3/Arrowpb.png"></a></p>
+
<p id=top><a href="#topheader"><img src="https://static.igem.org/mediawiki/2014/4/41/Arrow.png"></a></p>
<div id="topheader">
<div id="topheader">
-
<img src="https://static.igem.org/mediawiki/2014/b/b1/Smelltheroses.png" class=nameimg>
+
<img src="https://static.igem.org/mediawiki/2014/2/2b/PB14bibliography.png" class=nameimg>
</div>
</div>
-
<div id=logo><img id=logoblanc src="https://static.igem.org/mediawiki/2014/7/7d/Logoblanc.png"><img id=logorose src="https://static.igem.org/mediawiki/2014/2/28/Logorose.png"></div>
+
<br><br><br><br><div class=part1>
-
<div id=fond>
+
<p class=text2>
-
        <table id=headtable>
+
              <a href="http://www.sciencedirect.com/science/article/pii/S0896627303003921">Gottfried, J. & Dolan, R., 2003. The nose smells what the eye sees: crossmodal visual facilitation of human olfactory perception. Neuron, 39, pp.375–386.</a>.</br></br>
-
<tr>
+
                <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC106792/"> Korpi, A., Pasanen, A. & Pasanen, P., 1998. Volatile Compounds Originating from Mixed Microbial Cultures on Building Materials under Various Humidity Conditions. , 64(8), pp.2914–2919. </a></br></br>
-
<td><b>BACKGROUND</b></br>
+
                <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4107342&tool=pmcentrez&rendertype=abstract ">Kuang, S. & Zhang, T., 2014. Smelling directions: olfaction modulates ambiguous visual motion perception. Scientific reports, 4, p.5796.</a> </br></br>
-
<p class=text1>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Cras elementum mauris interdum lacus venenatis aliquet. In ac nulla semper, convallis orci non, vestibulum nisi. Maecenas quis ultricies tellus. Sed vulputate tempor ultrices. Donec in eleifend dui. Quisque tempor sed leo vel euismod. Quisque auctor pharetra vestibulum. </p></td>
+
<a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3314678&tool=pmcentrez&rendertype=abstract">Lenochová, P. et al., 2012. Psychology of fragrance use: perception of individual odor and perfume blends reveals a mechanism for idiosyncratic effects on fragrance choice. PloS one, 7(3), p.e33810. . </a><br><br>
-
<td><b>AIMS</b></br>
+
<a href="http://www.ncbi.nlm.nih.gov/pubmed/23397453">Li, G. & Young, K.D., 2013. Indole production by the tryptophanase TnaA in Escherichia coli is determined by the amount of exogenous tryptophan. Microbiology (Reading, England), 159(Pt 2), pp.402–10.  </a><br><br>
-
<p class=text1>Nunc porttitor arcu eget est pretium rutrum. Fusce feugiat ex eu odio pharetra rhoncus. Nullam tincidunt lobortis nibh. Maecenas non felis eu velit tincidunt tristique. Phasellus in urna odio. Nunc vestibulum sem justo, ac laoreet elit sodales ut. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Donec eu massa. </p></td>
+
<a href="http://www.formatex.info/microbiology4/table-contents.pdf">Weisskopf, L., 2013. The potential of bacterial volatiles for crop protection against phytophathogenic fungi. , pp.1352–1363. </a><br><br>
-
<td><b>RESULTS</b></br>
+
<a href="http://www.sciencedirect.com/science/article/pii/009286749190418X "> Buck, L. & Axel, R., 1991. A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell, 65, pp.175–187. </a><br><br> </p>
-
<p class=text1>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nunc convallis fringilla nunc, nec tristique neque. Praesent ut ante ultrices, dignissim nunc eget, interdum velit. Donec lobortis iaculis lorem, eget ornare quam finibus et. Vestibulum vehicula fringilla mauris, vitae feugiat ligula pharetra a. Duis fermentum neque vel dapibus accumsan. Quisque fringilla. </p></td>
+
<h6>Smell the Roses</h6>
-
<td><b>BIOBRICKS</b></br>
+
<p class=text1>
-
<p class=text1>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Mauris vel neque odio. Suspendisse eget dui quis quam semper placerat at nec orci. Cras malesuada sem nec aliquam imperdiet. Cras vitae nisl eu augue iaculis aliquam et eget turpis. Fusce pulvinar ipsum eu neque auctor, at luctus nibh pulvinar. Vivamus in. </p></td>
+
 
-
</tr>
+
<a href="http://astro1.panet.utoledo.edu/~vkarpov/Feeling_Smell_PhysRevLett_98_038101%5B1%5D.pdf">Brookes, J., Hartoutsiou, F., Horsfield, a., & Stoneham, a. (2007). Could Humans Recognize Odor by Phonon Assisted Tunneling? Physical Review Letters, 98(3), 038101. doi:10.1103/PhysRevLett.98.038101 </a><br><br>
-
</table>
+
               
-
        </div>
+
<a href="http://www.sciencedirect.com/science/article/pii/S0092867404000510">Buck, L. (2004). The search for odorant receptors. Cell, 117–120.</a> <br><br>
-
<table id=tablelien>
+
<a href="http://hdl.handle.net/1854/LU-4423524">Callewaert, C., Buysschaert, B., Vossen, E., Fievez, V., Van de Wiele, T., & Boon, N. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of microbiological methods, 103, 6–8. doi:10.1016/j.mimet.2014.05.005 </a> <br><br>
-
<tr>
+
<a href="http://www.ncbi.nlm.nih.gov/pubmed/20831940">Lundström, J. N., & Olsson, M. J. (2013). Functional Neuronal Processing of Human Body Odors. Vitam Horm. NIH., 6729(10), 1–19. doi:10.1016/S0083-6729(10)83001-8.Functional </a> <br><br>
-
<td><a href="#intro">Introduction</a></td>
+
<a href="http://onlinelibrary.wiley.com/doi/10.1002/biot.201000174/abstract"> Nijland, R., & Burgess, J. (2010). Bacterial olfaction. Biotechnology journal, 9, 2–19. </a><br><br>
-
<td><a href="#aims">Aims</a></td>
+
<a href="http://www.pnas.org/content/98/8/4788.short">Seo, H., Song, J., & Cheong, J. (2001). Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses. Proceedings of the National Academy of Sciences. </a> <br><br>
-
<td><a href="#">?</a></td>
+
<a href="http://www.ncbi.nlm.nih.gov/pubmed/17108953">Bargmann, C.I., 2006. Comparative chemosensation from receptors to ecology. Nature, 444(7117), pp.295–301. </a> <br><br>
-
<td><a href="#results">Results</a></td>
+
<a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1681482&tool=pmcentrez&rendertype=abstract">Baba, T. <i>et al.</i>, 2006. Construction of <i>Escherichia coli</i> K-12 in-frame, single-gene knockout mutants: the Keio collection. Molecular systems biology, 2, p.2006.0008.</a><br><br>
-
<td><a href="#motivation">Motivations</a></td>
+
</p>
-
</tr>
+
        <br><br><br><p class=text2 "margin-top:-40px;"><a target="blank" href="http://www.ingentaconnect.com/content/iafp/jfp/2004/00000067/00000005/art00024">Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016.</br></br>
-
</table>
+
<a target="blank" href="http://www.springer.com/food+science/book/978-3-540-69933-0">Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.</a> </p>
-
<div id=intro>
+
 
-
<h6>Introduction</h6>
+
        <h6 id="Teen">Teen Spirit</h6>
-
<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Ut imperdiet diam eget quam imperdiet imperdiet. Mauris dapibus risus felis, sed ornare diam accumsan aliquet. Sed eu turpis porta, porttitor tortor et, condimentum augue. Curabitur a maximus nisi. Vivamus vitae magna ex. Donec congue auctor odio vitae tempus. In a gravida neque, et tristique tortor. Phasellus a odio sit amet enim ornare lobortis. Morbi sodales, diam non rutrum aliquam, ligula mauris consectetur urna, sed interdum quam risus sit amet enim. Aenean euismod enim magna, id pretium eros molestie non. Proin rutrum lobortis leo, sit amet congue erat. Nulla congue pellentesque augue porta dignissim. Pellentesque quis ex sollicitudin, condimentum risus varius, aliquet ipsum. Ut pulvinar aliquet maximus. Praesent imperdiet interdum commodo. </p>
+
        <p class=text1><a target="blank" href="http://www.nature.com/jid/journal/v116/n4/full/5601027a.html">Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging.<i> Journal of investigative dermatology</i>, 116(4), 520-524.</br></br>
-
<img src="">
+
      <a target="blank" href="http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0038110&representation=PDF">Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.</a>
-
</div>
+
 
-
<div id=aims>
+
 
-
<h6>Aims</h6>
+
</p>
-
<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nullam bibendum purus eu neque finibus, eget pellentesque sapien viverra. Vestibulum ultrices posuere tempor. Maecenas ultrices sodales magna ac placerat. Sed a ex dignissim, ornare metus non, malesuada arcu. Etiam ullamcorper odio leo, at molestie eros sollicitudin in. Morbi aliquam scelerisque facilisis. Aenean tincidunt aliquam erat, quis ullamcorper nulla accumsan ac. Proin interdum nibh quam, in lacinia ipsum dignissim at. Nunc elementum lacus sed purus pharetra tincidunt. Sed ac velit vel turpis pulvinar accumsan ut in mauris. Praesent ac dapibus dui. Nullam finibus turpis et turpis sagittis congue. </p>
+
       
-
<img src="">
+
 
-
</div>
+
 
-
<div id=results>
+
 
-
<h6>Results</h6>
+
        <br><br><br><p class=text2 "margin-top:-40px;">
-
<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Sed sit amet laoreet metus, ac viverra dolor. Sed et orci imperdiet sem vulputate ultricies. Aliquam erat volutpat. Cras semper ex non odio aliquet, eget feugiat eros tempor. Integer hendrerit odio et bibendum maximus. Duis scelerisque lacus in odio faucibus fringilla. Nulla eleifend aliquet molestie. Morbi aliquam rhoncus efficitur. Proin consectetur augue aliquam risus convallis egestas. Nunc viverra felis non nibh consequat, nec faucibus ipsum rutrum. Proin placerat faucibus libero vitae dapibus. </p>
+
        <a target="blank" href="http://hmg.oxfordjournals.org/content/7/5/839.full.pdf+html">Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. <i>Human molecular genetics</i>, 7(5), 839-845.</br></br>
-
<img src="">
+
        <a target="blank" href="http://ac.els-cdn.com/S0278691504001632/1-s2.0-S0278691504001632-main.pdf?_tid=55d68548-512e-11e4-840e-00000aab0f6c&acdnat=1413022197_3dd78b6d49e064bee1fb20887950b1d1">Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin.<i> Food and chemical toxicology</i>, 42(10), 1619-1628.</br></br>
-
</div>
+
        <a target="blank" href="http://www.sciencedirect.com/science/article/pii/S0006291X03010878">Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from<i> Methylophaga</i> sp. strain SK1 and its indigo synthesis in<i> Escherichia coli</i>. Biochemical and biophysical research communications, 306(4), 930-936.</br></br>
-
<div id=motivation>
+
<a href="http://www.ncbi.nlm.nih.gov/pubmed/11259343">Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. <i>Drug Metabolism and Disposition</i>, 29(4), 517-521.</br></br>
-
<h6>Motivation</h6>
+
 
-
<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nam eu justo a dolor efficitur laoreet ut at lorem. Fusce dapibus lobortis nisi vehicula porttitor. In volutpat mauris et aliquam pellentesque. Vestibulum fringilla lacus metus, ac ullamcorper lectus sagittis sed. Suspendisse congue magna sed risus molestie aliquam. Sed placerat sagittis volutpat. Phasellus id erat neque. Quisque bibendum iaculis ante et feugiat. In hac habitasse platea dictumst. Fusce placerat lorem vel felis tincidunt, in elementum odio condimentum. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas. Donec tincidunt bibendum lacus non viverra. Nulla mattis, ante vitae faucibus auctor, mi purus consequat dolor, non malesuada nulla lorem ac odio. </p>
+
<a target="blank" href="http://seva.cnb.csic.es/SEVA/Welcome.html">Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014</br></br>
-
<img src="">
+
 
 +
<a target="blank" href="ndt.oxfordjournals.org/content/21/5/1300.short">Bain, M. A., Faull, R., Fornasini, G., Milne, R. W., & Evans, A. M. (2006). Accumulation of trimethylamine and trimethylamine-N-oxide in end-stage renal disease patients undergoing haemodialysis. Nephrology Dialysis Transplantation, 21(5), 1300-1304.
 +
</br></br>
 +
 
 +
 
 +
</p>
 +
 
 +
            <h6>Something Fishy</h6>
 +
        <p class=text1><a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535645/pdf/pnas.201215689.pdf">Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme.<i> Proceedings of the National Academy of Sciences</i>, 109(52), 21307-21312.</br></br>
 +
        <a target="blank" href="http://www.jbc.org/content/237/4/1309.full.pdf">Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. <i>J. biol. Chem</i>, 237, 1309-1313.</br></br>
 +
        <a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3052392/pdf/cbr_32_1_033.pdf">Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. <i>The Clinical Biochemist Reviews</i>, 32(1), 33.</i></br></br>
 +
        <a target="blank" href="http://www.pnas.org/content/108/43/17791.full.pdf+html">Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. <i>Proceedings of the National Academy of Sciences</i>, 108(43), 17791-17796.</br></br>
 +
        <a target="blank" href="http://www.nature.com/clpt/journal/v42/n5/pdf/clpt1987201a.pdf">Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans.<i> Clinical Pharmacology & Therapeutics</i>, 42(5), 588-594.</a>
 +
        <a target="blank" href="http://www.orea.or.jp/en/PDF/Odor_Measurement_Review,.pdf#page=113">Nagata, Y. (2003). Measurement of odor threshold by triangle odor bag method. Odor measurement review, 118-127.</a>
 +
 
 +
</p>
 +
 
 +
 
 +
<br><br><br><br><p class=text2>
 +
               
 +
 
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/20599493">Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.<i>Toxicol In Vitro</i> 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016 </br></br>
 +
 
 +
<a target="blank" href="https://www.env.go.jp/en/air/odor/measure/02_3_2.pdf">Nagata Y. 1993. Measurement of odor threshold by triangle odor bag method. In: Odor measurement review. Tokyo: Office of Odor, Noise and Vibration Environmental Management Bureau, Ministry of Environment. p 118–127.</br></br></p>
 +
<h6>Goody Two Shoes</h6>
 +
<p class=text1>
 +
                <a target="blank" href="http://www.nrcresearchpress.com/doi/abs/10.1139/w05-130">Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. <i>Canadian Journal of Microbiology </i>52(4): 357-364, 10.1139/w05-130 </br></br>
 +
 
 +
<a target="blank" href="http://www.sciencedirect.com/science/article/pii/S0167701214001262">Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. <i>Journal of Microbiological Methods</i>
 +
Volume 103, 6–8 </br></br>
 +
 
 +
</br></br>
 +
                <br><br><br><p class=text2>
 +
              <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/?term=CRISPR-assisted+editing+of+bacterial+genomes+Wenyan+Jiang1%2C4%2C+David+Bikard1%2C4%2C+David+Cox2%2C3%2C+Feng+Zhang2%2C3%2C+and+Luciano+A.+Marraffini1">Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol. 2013 Mar;31(3):233-9. doi: 10.1038/nbt.2508. Epub 2013 Jan 29.</a></br></br>
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/?term=Programmable+Removal+of+Bacterial+Strains+by+Use+of+Genome-+Targeting+CRISPR-Cas+Systems+Ahmed+A.+Gomaa%2Ca+Heidi+E.+Klumpe%2Ca+Michelle">Gomaa AA, Klumpe HE, Luo ML, Selle K, Barrangou R, Beisel CL. Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. MBio. 2014 Jan 28;5(1):e00928-13. doi: 10.1128/mBio.00928-13.</a></br></br></p>
 +
<h6>Don't Sweat It</h6>
 +
<p class=text1>
 +
                <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/12468539">Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539.</a></br></br>
 +
                <a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/7288207">Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668</a></br></br>
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/12468539">Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207.</a></br></br>
 +
 
 +
                </p>
 +
 
 +
 
 +
<br><br><br><p class=text2>
 +
                Classen, C (1994). The Cultural History of Smell. Routledge. </br></br>
 +
                Chaumier Serge (2003). L'Odeur du baiser, in A Fleur de peau. Payot </p>
 +
<h6>Design Practice</h6>
 +
<p class=text1>
 +
                Jaquet, C (2010). Philosophie de l'odorat. PUF.</br></br>
 +
                Corbin, A (2008). Le miasme et la jonquille : L'odorat et l'imaginaire social aux XVIIIe et XIXe siècles. Champs Histoire. Flammarion. </br></br>
 +
<br><br><br><br>
 +
<p class=text2>
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346182/" >Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.  Briefings in Bioinformatics 2012. </a><br><br> 
 +
 
 +
<a target="blank" href="http://www.sbg.bio.ic.ac.uk/~phyre2/html/nprot.2009.2.pdf" >Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009). </a> <br><br>
 +
 
 +
<a target="blank" href="http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1923.html" >Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.</a> <br><br>             
 +
 
 +
</p>
 +
<h6>Bioinformatics</h6>
 +
<p class=text1>
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/22719234" >Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358</a> <br><br>
 +
 
 +
<a target="blank" href="http://consurf.tau.ac.il/ConSurf_2013_reprint.pdf" >Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096</a> <br><br>
 +
 
 +
<a target="blank" href="http://www.ncbi.nlm.nih.gov/pubmed/23566668" >Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668. </a> <br><br>
 +
</p>
 +
 
</div>
</div>
</body>
</body>
</html>
</html>
 +
{{:Team:Paris_Bettencourt/Footer}}

Latest revision as of 03:10, 18 October 2014





Gottfried, J. & Dolan, R., 2003. The nose smells what the eye sees: crossmodal visual facilitation of human olfactory perception. Neuron, 39, pp.375–386..

Korpi, A., Pasanen, A. & Pasanen, P., 1998. Volatile Compounds Originating from Mixed Microbial Cultures on Building Materials under Various Humidity Conditions. , 64(8), pp.2914–2919.

Kuang, S. & Zhang, T., 2014. Smelling directions: olfaction modulates ambiguous visual motion perception. Scientific reports, 4, p.5796.

Lenochová, P. et al., 2012. Psychology of fragrance use: perception of individual odor and perfume blends reveals a mechanism for idiosyncratic effects on fragrance choice. PloS one, 7(3), p.e33810. .

Li, G. & Young, K.D., 2013. Indole production by the tryptophanase TnaA in Escherichia coli is determined by the amount of exogenous tryptophan. Microbiology (Reading, England), 159(Pt 2), pp.402–10.

Weisskopf, L., 2013. The potential of bacterial volatiles for crop protection against phytophathogenic fungi. , pp.1352–1363.

Buck, L. & Axel, R., 1991. A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell, 65, pp.175–187.

Smell the Roses

Brookes, J., Hartoutsiou, F., Horsfield, a., & Stoneham, a. (2007). Could Humans Recognize Odor by Phonon Assisted Tunneling? Physical Review Letters, 98(3), 038101. doi:10.1103/PhysRevLett.98.038101

Buck, L. (2004). The search for odorant receptors. Cell, 117–120.

Callewaert, C., Buysschaert, B., Vossen, E., Fievez, V., Van de Wiele, T., & Boon, N. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of microbiological methods, 103, 6–8. doi:10.1016/j.mimet.2014.05.005

Lundström, J. N., & Olsson, M. J. (2013). Functional Neuronal Processing of Human Body Odors. Vitam Horm. NIH., 6729(10), 1–19. doi:10.1016/S0083-6729(10)83001-8.Functional

Nijland, R., & Burgess, J. (2010). Bacterial olfaction. Biotechnology journal, 9, 2–19.

Seo, H., Song, J., & Cheong, J. (2001). Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses. Proceedings of the National Academy of Sciences.

Bargmann, C.I., 2006. Comparative chemosensation from receptors to ecology. Nature, 444(7117), pp.295–301.

Baba, T. et al., 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Molecular systems biology, 2, p.2006.0008.




Cho, M. J., Buescher, R. W., Johnson, M., & Janes, M. (2004). Inactivation of pathogenic bacteria by cucumber volatiles (E, Z)-2, 6-nonadienal and (E)-2-nonenal. Journal of Food Protection®, 67(5), 1014-1016.

Grosch, W., and P. Schieberle. "Aroma Compounds." Food Chemistry. By H. D. Belitz. N.p.: Springer, 2009. 340-402. Print.

Teen Spirit

Haze, S., Gozu, Y., Nakamura, S., Kohno, Y., Sawano, K., Ohta, H., & Yamazaki, K. (2001). 2-Nonenal newly found in human body odor tends to increase with aging. Journal of investigative dermatology, 116(4), 520-524.

Mitro, S., Gordon, A. R., Olsson, M. J., & Lundström, J. N. (2012). The smell of age: perception and discrimination of body odors of different ages. PloS one, 7(5), e38110.




Treacy, E. P., Akerman, B. R., Chow, L. M. L., Youil, R., Bibeau, C., Lin, J., ... & Forrest, S. M. (1998). Mutations of the flavin-containing monooxygenase gene (FMO3) cause trimethylaminuria, a defect in detoxication. Human molecular genetics, 7(5), 839-845.

Kenyon, S., Carmichael, P. L., Khalaque, S., Panchal, S., Waring, R., Harris, R., ... & Mitchell, S. C. (2004). The passage of trimethylamine across rat and human skin. Food and chemical toxicology, 42(10), 1619-1628.

Choi, H. S., Kim, J. K., Cho, E. H., Kim, Y. C., Kim, J. I., & Kim, S. W. (2003). A novel flavin-containing monooxygenase from Methylophaga sp. strain SK1 and its indigo synthesis in Escherichia coli. Biochemical and biophysical research communications, 306(4), 930-936.

Mitchell, S. C., & Smith, R. L. (2001). Trimethylaminuria: the fish malodor syndrome. Drug Metabolism and Disposition, 29(4), 517-521.

Standar European Vector Architecture, http://seva.cnb.csic.es/SEVA/Welcome.html, 2014

Bain, M. A., Faull, R., Fornasini, G., Milne, R. W., & Evans, A. M. (2006). Accumulation of trimethylamine and trimethylamine-N-oxide in end-stage renal disease patients undergoing haemodialysis. Nephrology Dialysis Transplantation, 21(5), 1300-1304.

Something Fishy

Craciun, S., & Balskus, E. P. (2012). Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme. Proceedings of the National Academy of Sciences, 109(52), 21307-21312.

Baker, J. R., & Chaykin, S. (1962). The biosynthesis of trimethylamine-N-oxide. J. biol. Chem, 237, 1309-1313.

Richard J Mackay et al. (2011), Mackay, R. J., McEntyre, C. J., Henderson, C., Lever, M., & George, P. M. (2011). Trimethylaminuria: causes and diagnosis of a socially distressing condition. The Clinical Biochemist Reviews, 32(1), 33.

Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., & Murrell, J. C. (2011). Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, 108(43), 17791-17796.

Al-Waiz, M., Ayesh, R., Mitchell, S. C., Idle, J. R., & Smith, R. L. (1987). A genetic polymorphism of the N-oxidation of trimethylamine in humans. Clinical Pharmacology & Therapeutics, 42(5), 588-594. Nagata, Y. (2003). Measurement of odor threshold by triangle odor bag method. Odor measurement review, 118-127.





Christopher J. Harvey, Ryan F. LeBouf, Aleksandr B. Stefaniak. (2010). Formulation and stability of a novel artificial human sweat under conditions of storage and use.Toxicol In Vitro 24(6):1790-6. doi: 10.1016/j.tiv.2010.06.016

Nagata Y. 1993. Measurement of odor threshold by triangle odor bag method. In: Odor measurement review. Tokyo: Office of Odor, Noise and Vibration Environmental Management Bureau, Ministry of Environment. p 118–127.

Goody Two Shoes

Ara K, Hama M, Akiba S, Koike K, Okisaka K, Hagura T, Kamiya T, Tomita F. (2005). Foot odor due to microbial metabolism and its control. Canadian Journal of Microbiology 52(4): 357-364, 10.1139/w05-130

Chris Callewaert, Benjamin Buysschaert, Els Vossen, Veerle Fievez, Tom Van de Wiele, Nico Boon. (2014). Artificial sweat composition to grow and sustain a mixed human axillary microbiome. Journal of Microbiological Methods Volume 103, 6–8






Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol. 2013 Mar;31(3):233-9. doi: 10.1038/nbt.2508. Epub 2013 Jan 29.

Gomaa AA, Klumpe HE, Luo ML, Selle K, Barrangou R, Beisel CL. Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. MBio. 2014 Jan 28;5(1):e00928-13. doi: 10.1128/mBio.00928-13.

Don't Sweat It

Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G. A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla. J Biol Chem. 2003 Feb 21;278(8):5718-27. Epub 2002 Dec 4. PubMed PMID: 12468539.

Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668

Leyden JJ, McGinley KJ, Hölzle E, Labows JN, Kligman AM. The microbiology of the human axilla and its relationship to axillary odor. J Invest Dermatol. 1981 Nov;77(5):413-6. PubMed PMID: 7288207.




Classen, C (1994). The Cultural History of Smell. Routledge.

Chaumier Serge (2003). L'Odeur du baiser, in A Fleur de peau. Payot

Design Practice

Jaquet, C (2010). Philosophie de l'odorat. PUF.

Corbin, A (2008). Le miasme et la jonquille : L'odorat et l'imaginaire social aux XVIIIe et XIXe siècles. Champs Histoire. Flammarion.





Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012.

Kelley LA and Sternberg MJE. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 4, 363 - 371 (2009).

Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012, 9:357-359.

Bioinformatics

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. "Metabolic reconstruction for metagenomic data and its application to the human microbiome." PLoS Comput Biol. 2012 Jun;8(6):e1002358

Celniker G., Nimrod G., Ashkenazy H., Glaser F., Martz E., Mayrose I., Pupko T., and Ben-Tal N. 2013. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function Isr. J. Chem. 2013 March 10, doi: 10.1002/ijch.201200096

Fredrich E, Barzantny H, Brune I, Tauch A. Daily battle against body odor: towards the activity of the axillary microbiota. Trends Microbiol. 2013 Jun;21(6):305-12. doi: 10.1016/j.tim.2013.03.002. Epub 2013 Apr 6. Review. PubMed PMID: 23566668.

Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
+33 1 44 41 25 22/25
paris-bettencourt-igem@googlegroups.com
Copyright (c) 2014 igem.org. All rights reserved.

Retrieved from "http://2014.igem.org/Team:Paris_Bettencourt/Bibliograpy"