Team:Warsaw/EXTRAS
From 2014.igem.org
(12 intermediate revisions not shown) | |||
Line 10: | Line 10: | ||
<style> | <style> | ||
/* Caveat before editing styles: if you're not sure what you're doing, please contact Patryk Hes (pathes@wp.pl) */ | /* Caveat before editing styles: if you're not sure what you're doing, please contact Patryk Hes (pathes@wp.pl) */ | ||
+ | |||
+ | |||
+ | <div id="menubar" class="left-menu noprint"> | ||
+ | <ul> | ||
+ | <li class="selected"><a href="/Team:Warsaw">Page</a></li> | ||
+ | <li class="new"><a href="/wiki/index.php?title=Talk:Team:Warsaw&action=edit&redlink=1">Discussion </a></li> | ||
+ | <li><a href="/wiki/index.php?title=Team:Warsaw&action=edit">Edit</a></li> | ||
+ | <li><a href="/wiki/index.php?title=Team:Warsaw&action=history">History</a></li> | ||
+ | <li><a href="/Special:MovePage/Team:Warsaw">Move</a></li> | ||
+ | <li><a href="/wiki/index.php?title=Team:Warsaw&action=watch">Watch</a></li> | ||
+ | <li style="color:white;cursor:default">teams</li> | ||
+ | </ul> | ||
+ | </div> <!-- end menubar (left) --> | ||
+ | |||
+ | <div class="right-menu noprint" id="menubar"> | ||
+ | <ul> | ||
+ | <li id="pt-userpage"><a href="/User:Qba" title="Your user page [.]" accesskey="." class="new">Qba</a></li> | ||
+ | <li id="pt-preferences"><a href="https://igem.org/User_Information" title="My account">My account</a></li> | ||
+ | <li id="pt-logout"><a href="/wiki/index.php?title=Special:UserLogout&returnto=Team:Warsaw" title="Log out">Log out</a></li> | ||
+ | </ul> | ||
+ | </div><!-- end right menubar --> | ||
+ | |||
+ | <div id="search-controls" class="noprint"> | ||
+ | <form action="/Special:Search" id="searchform"> | ||
+ | <input id="searchInput" name="search" type="text" title="Search 2014.igem.org [alt-f]" accesskey="f" value="" autocomplete="off"> | ||
+ | <input type="submit" name="go" class="searchButton" id="searchGoButton" value="Go" title="Go to a page with this exact name if exists"> | ||
+ | <input type="submit" name="fulltext" class="searchButton" id="mw-searchButton" value="Search" title="Search the pages for this text"> | ||
+ | </form> | ||
+ | </div> <!-- close search controls --> | ||
+ | |||
+ | </div> <!-- close top-section--> | ||
+ | |||
+ | |||
+ | div id="content"> | ||
+ | <a name="top" id="top"></a> | ||
+ | <h1 class="firstHeading">Team:Warsaw</h1> | ||
+ | <div id="bodyContent"> | ||
+ | <h3 id="siteSub" class="noprint">From 2014.igem.org</h3> | ||
+ | <div id="contentSub"></div> | ||
+ | <!-- | ||
+ | <div id="jump-to-nav">Jump to:<a href="#column-one">navigation</a>, <a href="#searchInput">search</a></div>--> | ||
+ | |||
/* Wiki hacks */ | /* Wiki hacks */ | ||
Line 76: | Line 118: | ||
background-position: center; | background-position: center; | ||
background-repeat: no-repeat; | background-repeat: no-repeat; | ||
+ | cursor: pointer; | ||
} | } | ||
Line 230: | Line 273: | ||
<body onload="applyLanguage()"> | <body onload="applyLanguage()"> | ||
- | <ul class="flags"> | + | <!---ul class="flags"> |
<li style="background-image: url('https://static.igem.org/mediawiki/2014/f/fb/2014-iGEM-site-flag-pl.png')" | <li style="background-image: url('https://static.igem.org/mediawiki/2014/f/fb/2014-iGEM-site-flag-pl.png')" | ||
onclick="document.cookie='lang=pl'; applyLanguage();"></li> | onclick="document.cookie='lang=pl'; applyLanguage();"></li> | ||
Line 239: | Line 282: | ||
<li style="background-image: url('https://static.igem.org/mediawiki/2014/c/c9/2014-iGEM-site-flag-ne.png')" | <li style="background-image: url('https://static.igem.org/mediawiki/2014/c/c9/2014-iGEM-site-flag-ne.png')" | ||
onclick="document.cookie='lang=ne'; applyLanguage();"></li> | onclick="document.cookie='lang=ne'; applyLanguage();"></li> | ||
- | </ul> | + | </ul---> |
- | <div class="celulare-logo"></div> | + | <div class="celulare-logo" onclick="location.href='https://2014.igem.org/Team:Warsaw';"></div> |
<ul class="main-menu"> | <ul class="main-menu"> | ||
- | + | <!-- Menu items --> | |
<li> | <li> | ||
- | <a href="/Team:Warsaw | + | <a href="https://2014.igem.org/Team:Warsaw">Project</a> |
<ul> | <ul> | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Project#background">Background</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Project#background">Background</a></li> | ||
Line 250: | Line 293: | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Project#detailed_explanation">Detailed explanation</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Project#detailed_explanation">Detailed explanation</a></li> | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Project#modelling">Modelling</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Project#modelling">Modelling</a></li> | ||
- | <li><a href="https://2014.igem.org/Team:Warsaw/Project# | + | <li><a href="https://2014.igem.org/Team:Warsaw/Project#weeestudy">WEEE study</a></li> |
- | + | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Project#safety">Safety</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Project#safety">Safety</a></li> | ||
- | <li><a href="https://2014.igem.org/Team:Warsaw/Project#possibilities_of_development">Possibilities of development</a | + | <li><a href="https://2014.igem.org/Team:Warsaw/Project#possibilities_of_development">Possibilities of development</a> |
</ul> | </ul> | ||
</li> | </li> | ||
Line 262: | Line 304: | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Achievements#results">Results</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Achievements#results">Results</a></li> | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Achievements#cooperation">Cooperation</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Achievements#cooperation">Cooperation</a></li> | ||
- | <li><a href="https://2014.igem.org/Team:Warsaw/ | + | <li><a href="https://2014.igem.org/Team:Warsaw/Achievements#medal_criteria">Medal Criteria</a></li> |
+ | |||
</ul> | </ul> | ||
</li> | </li> | ||
Line 277: | Line 320: | ||
<a href="/Team:Warsaw/EXTRAS">EXTRAS</a> | <a href="/Team:Warsaw/EXTRAS">EXTRAS</a> | ||
<ul> | <ul> | ||
- | <li><a href="#bioprocess">Bioprocess</a></li> | + | <li><a href="https://2014.igem.org/Team:Warsaw/EXTRAS#bioprocess">Bioprocess</a></li> |
- | <li><a href="#discussion">Discussion</a></li> | + | <li><a href="https://2014.igem.org/Team:Warsaw/EXTRAS#discussion">Discussion</a></li> |
- | <li><a href=" | + | <li><a href="https://2014.igem.org/Team:Warsaw/EXTRAS#alternative_methods">Alternative methods</a></li> |
- | + | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Notebook">Notebook</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Notebook">Notebook</a></li> | ||
<li><a href="https://2014.igem.org/Team:Warsaw/Protocoles">Protocoles</a></li> | <li><a href="https://2014.igem.org/Team:Warsaw/Protocoles">Protocoles</a></li> | ||
Line 302: | Line 344: | ||
</ul> | </ul> | ||
<div class="main-content"> | <div class="main-content"> | ||
+ | |||
<h1>Technology</h1> </br> | <h1>Technology</h1> </br> | ||
<hr noshade="noshade" /> | <hr noshade="noshade" /> | ||
Line 307: | Line 350: | ||
<a name="bioprocess"><h2>Bioprocess</h2></a></br> | <a name="bioprocess"><h2>Bioprocess</h2></a></br> | ||
- | <p align="justify">Electronic equipment is the fastest growing waste | + | <p align="justify">Electronic equipment is the fastest growing waste category of waste in many developed countries. Amount of electronic waste grows rapidly because markets in which electronic is produced cross the other side of the ‘Digital Divide’. We stand in front of the following problem: what we are we going to do with all those computers, smartphones which we buy? All these products become obsolete or just unwanted within 1-3 years of purchase. Where will we find a new source of metals necessary to fabricate electronic equipment?</br> |
Using old and broken WEEE in our project not only gives us a source of metals to produce new smartphones or computers, but also solves problem of storing WEEE.</br> | Using old and broken WEEE in our project not only gives us a source of metals to produce new smartphones or computers, but also solves problem of storing WEEE.</br> | ||
<center><img src="https://static.igem.org/mediawiki/2014/6/6e/Recycling.jpg" alt="recyclin_itw" /></center> | <center><img src="https://static.igem.org/mediawiki/2014/6/6e/Recycling.jpg" alt="recyclin_itw" /></center> | ||
- | This figure shows a view on the context of re-use of EEE or its components. At the end of the use EEE returns to producers or to companies, which specialize in reuse of e-waste. | + | <p align="justify">This figure shows a view on the context of re-use of EEE or its components. At the end of the use EEE returns to producers or to companies, which specialize in reuse of e-waste. |
- | The next step is preparation for re-use. On this step | + | The next step is preparation for re-use. On this step wasted electronic equipment is deconstructed. Not only computer memories or other parts which contains valuable metals are re-use. We also want to recover such materials as plastic or glass. That step requires labor work or special machines which will prepare WEE for another point of the plan. |
- | Some parts of the TVs or computers may not be useful in another manufactory. Sometimes we need to remarked parts which we need and work in place with | + | Some parts of the TVs or computers may not be useful in another manufactory. Sometimes we need to remarked parts which we need and work in place with special equipment. |
- | + | In the future we can use our bacteria with lanthanides binding sequences to re-use lanthanides.</br> | |
- | 1) Removing from WEEE plastic and stirring parts which are abundant of rare earth metals such as | + | 1) Removing from WEEE plastic and stirring parts which are abundant of rare earth metals such as lanthanides, especially computer memories. Stirring increase availability WEEE with acid which is produced by <i>Thiobacillus ferrooxidans</i>. It display terbium from alloy.</br> |
- | 2) Effluent from our bioreactor has low pH (about 2,5) what is a lethal for E.coli. | + | 2) Effluent from our bioreactor has low pH (about 2,5) what is a lethal for <i>E.coli</i>. This is the reason why we add Ca(OH)<sub>2</sub> to effluent. It increases our pH to a level which is optimal to <i>E.coli</i> (about 7). Ca(OH)<sub>2</sub> is also cheap and it is not increasing cost of the process very much.</br> |
- | 3) Effluent goes to packed column bioreactor in which E.coli is immobilized. It gets across whole column. Ions of terbium binds and senses trough periplasmic domain.</br> | + | 3) Effluent goes to packed column bioreactor in which <i>E.coli</i> is immobilized. It gets across whole column. Ions of terbium binds and senses trough periplasmic domain.</br> |
- | 4) Column (with no initial effluent) is flushed by NaCl. PmrB can easily denaturate in NaCl | + | 4) Column (with no initial effluent) is flushed by NaCl. PmrB can easily denaturate in NaCl solution losing its conformation. Ions of terbium do not precipitate with NaCl aq and do not make insoluble components with it.</br> |
- | 5) Ions of terbium are recovered from solution by electrolysis | + | 5) Ions of terbium are recovered from solution by electrolysis</br></br> |
+ | References:</br> | ||
+ | Borrman Jeff et al., "One Global Understanding of Re-Use | ||
+ | — Common Definitions", StEP, 2009 </br> | ||
+ | Schluep Mathias et al., "Recycling from e-waste to resources" , StEP, 20 | ||
+ | <a href="https://2014.igem.org/Team:Warsaw/EXTRAS"><p style="text-align:right;"><h6>Up↑</h6></p></a> | ||
<hr noshade="noshade" /> | <hr noshade="noshade" /> | ||
<a name="discussion"><h2>Discussion</h2></a></br> | <a name="discussion"><h2>Discussion</h2></a></br> | ||
- | Our process finds not only a way to recovery the lanthanides, but also other metals such as copper ( it takes place at first point of it and other rare metals.</br> | + | Our process finds not only a way to recovery the lanthanides, but also other metals such as copper ( it takes place at first point of it) and other rare metals.We not only gain rare metals, but also solve the problem of WEEE. There are alternative ways to recycle metals such as cooper or iron by using bacteria, but lanthanides are usually extraced from motherlode, which nowdays is really costly.</br> |
- | Our way of recovery lanthanides does not produce pollution but it also is a safe way of managing with | + | Our way of recovery lanthanides does not produce pollution but it also is a safe way of managing with WEEE. Other methods of gaining lanthanides use mix of concentrated acids such as HCl or HNO<sub>3</sub>. The most common problems with these methods are difficult to neutralise byproducts. Byproducts, especially Ca(NO<sub>3</sub>)<sub>2</sub> are environmental-threatening. Their storing is very difficult and costly.Mining of lanthanides by old methods need to be placed on big areas, but our process takes less place. Area which will be taken to run it strictly depends on scale (in contrast to minors which always will take more space).</br> |
- | < | + | Method which we presented is eco-friendly and solves the problem of full landfills with WEEE.</br> In our opinion using microorganisms to recycle e-waste will be a standard way of raising lanthanides. |
- | + | <a href="https://2014.igem.org/Team:Warsaw/EXTRAS"><p style="text-align:right;"><h6>Up↑</h6></p></a> | |
- | <a | + | |
<hr noshade="noshade" /> | <hr noshade="noshade" /> | ||
<a name="alternative_methods"><h2>Alternative methods</h2></a></br> | <a name="alternative_methods"><h2>Alternative methods</h2></a></br> | ||
- | Our final system was of course not the only possibility. There were some points where we had to decide... | + | <p align="justify">Our final system was of course not the only possibility. There were some points where we had to decide... |
<h4>Reporter protein</h4> | <h4>Reporter protein</h4> | ||
- | Finally we decided for GFP protein because of | + | Finally we decided for GFP protein because of its prevalence, simplicity and fact that GFP does not require any additional reagents (eg. IPTG).</br> |
We could have used other fluorescent proteins, for instance superfolder fluorescent proteins constructed by iGEM Warsaw 2013 Team, but regular GFP was the simpliest choice.</br> | We could have used other fluorescent proteins, for instance superfolder fluorescent proteins constructed by iGEM Warsaw 2013 Team, but regular GFP was the simpliest choice.</br> | ||
<h4>Binding agent</h4> | <h4>Binding agent</h4> | ||
- | Although | + | Although we were unable to implement lanthanide binding system because of lack of time, we had several ideas how to accomplish this goal.</br> |
<u>Poly-LBT peptide</u></br> | <u>Poly-LBT peptide</u></br> | ||
First was to construct a poly-LBT peptide which would be then anchored in the outer membrane of <i>E. coli</i> or transported to periplasm. We discarded this idea due to problems with modelling of behaviour of this polymer and problems with wet-lab design.</br> | First was to construct a poly-LBT peptide which would be then anchored in the outer membrane of <i>E. coli</i> or transported to periplasm. We discarded this idea due to problems with modelling of behaviour of this polymer and problems with wet-lab design.</br> | ||
Line 342: | Line 389: | ||
<u>Small peptide fused with LBT</u></br> | <u>Small peptide fused with LBT</u></br> | ||
Our final and probably best idea was to create a construct peptide of such composition:</br> | Our final and probably best idea was to create a construct peptide of such composition:</br> | ||
- | BBa_J32015(<i>E. coli</i> periplasm signal peptide)-structure peptide(ubiquitin or 1L2Y [BBa_K1459015]) - lanthanide binding tag.</br> | + | BBa_J32015 (<i>E. coli</i> periplasm signal peptide)-structure peptide (ubiquitin or 1L2Y [BBa_K1459015]) - lanthanide binding tag.</br> |
The plan was to create a small, 'rubbish' protein which would only bind lanthanides without having any physiological function in cell (since we were afraid whether over-expression of PmrB would be cytotoxic).</br> | The plan was to create a small, 'rubbish' protein which would only bind lanthanides without having any physiological function in cell (since we were afraid whether over-expression of PmrB would be cytotoxic).</br> | ||
+ | <a href="https://2014.igem.org/Team:Warsaw/EXTRAS"><p style="text-align:right;"><h6>Up↑</h6></p></a> | ||
<hr noshade="noshade" /> | <hr noshade="noshade" /> |
Latest revision as of 01:47, 18 October 2014
Technology
Bioprocess
Electronic equipment is the fastest growing waste category of waste in many developed countries. Amount of electronic waste grows rapidly because markets in which electronic is produced cross the other side of the ‘Digital Divide’. We stand in front of the following problem: what we are we going to do with all those computers, smartphones which we buy? All these products become obsolete or just unwanted within 1-3 years of purchase. Where will we find a new source of metals necessary to fabricate electronic equipment? Using old and broken WEEE in our project not only gives us a source of metals to produce new smartphones or computers, but also solves problem of storing WEEE.
This figure shows a view on the context of re-use of EEE or its components. At the end of the use EEE returns to producers or to companies, which specialize in reuse of e-waste.
The next step is preparation for re-use. On this step wasted electronic equipment is deconstructed. Not only computer memories or other parts which contains valuable metals are re-use. We also want to recover such materials as plastic or glass. That step requires labor work or special machines which will prepare WEE for another point of the plan.
Some parts of the TVs or computers may not be useful in another manufactory. Sometimes we need to remarked parts which we need and work in place with special equipment.
In the future we can use our bacteria with lanthanides binding sequences to re-use lanthanides.
1) Removing from WEEE plastic and stirring parts which are abundant of rare earth metals such as lanthanides, especially computer memories. Stirring increase availability WEEE with acid which is produced by Thiobacillus ferrooxidans. It display terbium from alloy.
2) Effluent from our bioreactor has low pH (about 2,5) what is a lethal for E.coli. This is the reason why we add Ca(OH)2 to effluent. It increases our pH to a level which is optimal to E.coli (about 7). Ca(OH)2 is also cheap and it is not increasing cost of the process very much.
3) Effluent goes to packed column bioreactor in which E.coli is immobilized. It gets across whole column. Ions of terbium binds and senses trough periplasmic domain.
4) Column (with no initial effluent) is flushed by NaCl. PmrB can easily denaturate in NaCl solution losing its conformation. Ions of terbium do not precipitate with NaCl aq and do not make insoluble components with it.
5) Ions of terbium are recovered from solution by electrolysis
References:
Borrman Jeff et al., "One Global Understanding of Re-Use
— Common Definitions", StEP, 2009
Schluep Mathias et al., "Recycling from e-waste to resources" , StEP, 20
Up↑
Discussion
Our process finds not only a way to recovery the lanthanides, but also other metals such as copper ( it takes place at first point of it) and other rare metals.We not only gain rare metals, but also solve the problem of WEEE. There are alternative ways to recycle metals such as cooper or iron by using bacteria, but lanthanides are usually extraced from motherlode, which nowdays is really costly. Our way of recovery lanthanides does not produce pollution but it also is a safe way of managing with WEEE. Other methods of gaining lanthanides use mix of concentrated acids such as HCl or HNO3. The most common problems with these methods are difficult to neutralise byproducts. Byproducts, especially Ca(NO3)2 are environmental-threatening. Their storing is very difficult and costly.Mining of lanthanides by old methods need to be placed on big areas, but our process takes less place. Area which will be taken to run it strictly depends on scale (in contrast to minors which always will take more space). Method which we presented is eco-friendly and solves the problem of full landfills with WEEE. In our opinion using microorganisms to recycle e-waste will be a standard way of raising lanthanides.Up↑
Alternative methods
Our final system was of course not the only possibility. There were some points where we had to decide...