Team:NTU Taida/M7

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[1] Network topology and parameter inference challenge. Retrieved from The Dream Project | website: http://www.the-dream-project.org/challenges/network-topology-and-parameter-inference-challenge
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[2] Team:Groningen/Promoters. (n.d.). Retrieved August 28, 2014, from https://2009.igem.org/Team:Groningen/Promoters
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[3] (n.d.). Retrieved August 28, 2014, from http://parts.igem.org/Ribosome_Binding_Sites/Prokaryotic/Constitutive/Community_Collection
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[4] Xu, Y., Heath, R. J., Li, Z., Rock, C. O., & White, S. W. (2001). The FadR· DNA Complex TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM INESCHERICHIA COLI. Journal of Biological Chemistry, 276(20), 17373-17379.
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[5] Van Aalten, D. M. F., DiRusso, C. C., Knudsen, J., & Wierenga, R. K. (2000). Crystal structure of FadR, a fatty acid‐responsive transcription factor with a novel acyl coenzyme A‐binding fold. The EMBO journal, 19(19), 5167-5177
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[6] Gene regulatory network. (2014, August 24). Retrieved August 29, 2014, from http://en.wikipedia.org/wiki/Gene_regulatory_network
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[7] Lee, Y. Y., Hsu, C. Y., Lin, L. J., Chang, C. C., Cheng, H. C., Yeh, T. H., ... & Chen, B. S. (2013). Systematic design methodology for robust genetic transistors based on I/O specifications via promoter-RBS libraries. BMC systems biology, 7(1), 109.
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[8]Feng, Y., & Cronan, J. E. (2012). Crosstalk of Escherichia coli FadR with global regulators in expression of fatty acid transport genes. PloS one, 7(9), e46275.
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[9]Braun, D., Basu, S., & Weiss, R. (2005, March). Parameter estimation for two synthetic gene networks: a case study. In Acoustics, Speech, and Signal Processing, 2005. Proceedings.(ICASSP'05). IEEE International Conference on(Vol. 5, pp. v-769). IEEE.
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[10] Michaelis, L., & Menten, M. L. (1913). Die kinetik der invertinwirkung Biochem Z 49: 333–369. Find this article online.
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[11] Introduction to Enzymes. (n.d.). Retrieved September 1, 2014, from http://www.worthington-biochem.com/introbiochem/substrateconc.html
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[12] Chen, W. W., Niepel, M., & Sorger, P. K. (2010). Classic and contemporary approaches to modeling biochemical reactions. Genes & development, 24(17), 1861-1875.
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[13]Nelson, D. L., Lehninger, A. L., & Cox, M. M. (2008). Lehninger principles of biochemistry. Macmillan.
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[14]http://en.wikipedia.org/wiki/Hill_equation_(biochemistry)
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[15] http://en.wikipedia.org/wiki/Michaelis%E2%80%93Menten_kinetics
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Latest revision as of 01:08, 18 October 2014

NTU-Taida

Reference

[1] Network topology and parameter inference challenge. Retrieved from The Dream Project | website: http://www.the-dream-project.org/challenges/network-topology-and-parameter-inference-challenge [2] Team:Groningen/Promoters. (n.d.). Retrieved August 28, 2014, from https://2009.igem.org/Team:Groningen/Promoters [3] (n.d.). Retrieved August 28, 2014, from http://parts.igem.org/Ribosome_Binding_Sites/Prokaryotic/Constitutive/Community_Collection [4] Xu, Y., Heath, R. J., Li, Z., Rock, C. O., & White, S. W. (2001). The FadR· DNA Complex TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM INESCHERICHIA COLI. Journal of Biological Chemistry, 276(20), 17373-17379. [5] Van Aalten, D. M. F., DiRusso, C. C., Knudsen, J., & Wierenga, R. K. (2000). Crystal structure of FadR, a fatty acid‐responsive transcription factor with a novel acyl coenzyme A‐binding fold. The EMBO journal, 19(19), 5167-5177 [6] Gene regulatory network. (2014, August 24). Retrieved August 29, 2014, from http://en.wikipedia.org/wiki/Gene_regulatory_network [7] Lee, Y. Y., Hsu, C. Y., Lin, L. J., Chang, C. C., Cheng, H. C., Yeh, T. H., ... & Chen, B. S. (2013). Systematic design methodology for robust genetic transistors based on I/O specifications via promoter-RBS libraries. BMC systems biology, 7(1), 109. [8]Feng, Y., & Cronan, J. E. (2012). Crosstalk of Escherichia coli FadR with global regulators in expression of fatty acid transport genes. PloS one, 7(9), e46275. [9]Braun, D., Basu, S., & Weiss, R. (2005, March). Parameter estimation for two synthetic gene networks: a case study. In Acoustics, Speech, and Signal Processing, 2005. Proceedings.(ICASSP'05). IEEE International Conference on(Vol. 5, pp. v-769). IEEE. [10] Michaelis, L., & Menten, M. L. (1913). Die kinetik der invertinwirkung Biochem Z 49: 333–369. Find this article online. [11] Introduction to Enzymes. (n.d.). Retrieved September 1, 2014, from http://www.worthington-biochem.com/introbiochem/substrateconc.html [12] Chen, W. W., Niepel, M., & Sorger, P. K. (2010). Classic and contemporary approaches to modeling biochemical reactions. Genes & development, 24(17), 1861-1875. [13]Nelson, D. L., Lehninger, A. L., & Cox, M. M. (2008). Lehninger principles of biochemistry. Macmillan. [14]http://en.wikipedia.org/wiki/Hill_equation_(biochemistry) [15] http://en.wikipedia.org/wiki/Michaelis%E2%80%93Menten_kinetics

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