Team:Nanjing-China/parts

From 2014.igem.org

(Difference between revisions)

Latest revision as of 00:34, 18 October 2014

This is a summary of all the parts we submitted this year. Details and character can be found on each respective part and specific testimony can be found in the Result.Also, our favorite parts is posted here. To see the result of our biobricks,click HERE.

We actually regard our suicide circuit as favorite composite part and positive feedback circuit divisions as our favorite part collection. However, as our whole system was assembled later than submission deadline, we regard their elements as favorite part instead.

http://parts.igem.org/Part:BBa_K1520024
http://parts.igem.org/Part:BBa_K1520509

Finally，we really appreciate for Prof. Zhao's lab to provide us two bio bricks, click BBa_K1520506, BBa_K1520507 to see more.We also thank Prof. Wei and our advisor Sun Peiqing for their help with the experiments related to these parts

Reference:
[1].Wei Wei, Tianze Zhu, Yue Wang, Hualin Yang, Ziyang Hao, Peng R. Chenand Jing Zhao, Engineering a gold-specific regulon for cell-based visual detection and recovery of gold, Chemical Science, 2012, 3, 1780.

Contact us：2014nanjingchina@gmail.com

@@ Line 116: / Line 116: @@
 </head>
 <body>
-<div name="001" id="001"></div>
 <div id="topBarContainer">
      <div class="topBarPic"><a href="https://2014.igem.org/Team:Nanjing-China/team"><img src="https://static.igem.org/mediawiki/2014/3/32/Team.png"/></a></div>
@@ Line 127: / Line 127: @@
      <div class="topBarPic"><a href="https://2014.igem.org/Team:Nanjing-China/safety"><img src="https://static.igem.org/mediawiki/2014/8/84/Safety.png"/></a></div>
      <div class="topBarPic" id="topPic"><a href="https://2014.igem.org/Team:Nanjing-China"><img src="https://static.igem.org/mediawiki/2014/archive/9/9a/20141015213559%21Home.png"/></a></div>
+<div class="topBarPic" ><a href="https://2014.igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2014/d/d6/IGEM_official_logo.png" style="width:90px;height:70px;margin-top:-155px;margin-left:1140px"/></a></div>
 </div>
 <br><br><br><br>
 <div id="menu">
-     <div class="menuItem" style="font-size:14px;"><a href="#001"><p>Summary&Favorite Parts</p></a></div>
+     <div class="menuItem" style="font-size:18px;"><a href="#002"><p>Favorite Parts</p></a></div>
-     <div class="menuItem" style="font-size:18px;"><a href="#002"><p>PgolTS-golS-PgolB</p></a></div>
+     <div class="menuItem" style="font-size:18px;"><a href="#001"><p>Summary</p></a></div>
 </div>
 <div id="contentContainer">
@@ Line 138: / Line 139: @@
          This is a summary of all the parts we submitted this year. Details and character can be found on each respective part and
          specific testimony can be found in the Result.Also, our favorite parts is posted here.
+        To see the result of our biobricks,click  <a href="https://static.igem.org/mediawiki/2014/6/61/Nbiolego_results.pdf">HERE</a>.
          </p>
      </div>
      <br>
+<div name="002" id="002"></div>
 <img src="https://static.igem.org/mediawiki/2014/e/e4/Parts00.jpg" style="margin-left:10px"/>
+<br>
+<div class="para">
+        <p>
+        We actually regard our suicide circuit as favorite composite part and positive feedback circuit divisions as our favorite part collection. However, as our whole system was assembled later than submission deadline, we regard their elements as favorite part instead.<br><br>
+<a href="http://parts.igem.org/Part:BBa_K1520024">http://parts.igem.org/Part:BBa_K1520024</a><br>
+<a href="http://parts.igem.org/Part:BBa_K1520509">http://parts.igem.org/Part:BBa_K1520509</a><br><br>
+        </p>
+    </div>
+<div name="001" id="001"></div>
      <img src="https://static.igem.org/mediawiki/2014/5/53/Parts02.jpg" style="margin-left:10px"/>
      <img src="https://static.igem.org/mediawiki/2014/0/09/Parts03.jpg" style="margin-left:10px"/>
      <img src="https://static.igem.org/mediawiki/2014/e/e2/Parts04.jpg" style="margin-left:10px"/>
@@ Line 151: / Line 164: @@
      <div class="para">
          <p>
-             <span style=";font-size:22px">1 Introduction：</span>
+             Finally，we really appreciate for Prof. Zhao's lab to provide us two bio bricks, click <a href="http://parts.igem.org/Part:BBa_K1520506">BBa_K1520506</a>, <a href="http://parts.igem.org/Part:BBa_K1520507">BBa_K1520507</a> to see more.We also thank Prof. Wei and our advisor Sun Peiqing for their help with the experiments related to these parts
-            PgolTS-golS-PgolB works as a <span style="color:#ccffcc">promoter</span>, which will result in the expression of downstream gene in the presence of <span style="color:#ffff99">gold ions</span>.<br><br>
-            A gold-specific sensory protein GolS from Samonella gol regulon was incorporated into E. coli,
-            which in conjunction with an      engineered downstream red fluorescence protein allowed the highly
-            sensitive and selective whole-cell detection of gold(III) ions by naked eyes. The putative gold-chaperone,
-            GolB, in the gol regulon was next verified to be specific to gold(I) ions over other metal ions
-            including copper(I). The subsequent display of GolB on E. coli cell surface permitted selective
-            enrichment of gold ions from media containing various thiophilic metal ions. The cell surface-enriched
-            gold(I) was further shown to be easily recovered and the gold-deprived bacteria were capable for re-usage.
-            E. coli bacteria harboring these gold-specific elements from the gol regulon could be a valuable tool
-            for visual detection and facile recycling of gold ions from environmental resources.<br><br>
-            GolS is a recently identified gold-specific MerR family transcriptional regulators from Samonella
-            that can effectively differentiate Au(I) from the other two coinage metal ions, Cu(I) and Ag(I).
-            Inspired by the recognition of the gol regulon (Fig. 1a), we tried to develop a gold ion selective
-            induced system in E. coli with the transformed gol cluster and red fluorescence protein to achieve
-            gold ion selective sensing on bacterial cells. As shown in (Fig. 1b), the gene of red fluorescence
-            protein (RFP) was inserted after the golS promoter in the vector pSB1C3, allowing its expression to
-            be driven by GolS, the gold-specific regulator.<br><br>
-            The E. coli cells containing the engineering plasmid were cultured in LB medium until OD600=0.6–0.8,
-            then a final concentration of 20 mM Au3+, Cu2+, Cd2+, Zn2+, or Ni2+ was added to the medium.
-            The induced E. coli cells were harvested by centrifugation and re-suspended in PBS buffer (pH 7.4).
-            The results showed that in the presence of gold ions, RFP was significantly expressed
-            and can be visualized by the naked eye (Fig. 1c). Next, the sensitivity of our engineered
-            E. coli cells to gold was investigated. E. coli cells induced by gradient concentrations
-            (0 mM, 0.25 mM, 1 mM, 5 mM, 10 mM and 20 mM) of HAuCl4 (Au3+) were re-suspended in PBS buffer
-            (pH 7.4). The results demonstrated that even the induced concentration of gold ions reached
-            as low as 0.25 mM (Fig. 1d, e), the red fluorescence of E. coli cells was still visible.
-            Different from micromolecule chemosensors design and synthesis by organic chemists, by using
-            this engineered E. coli we achieved highly selective and sensitive recognition of gold ions
-            by a visible and ratiometric fluorescence change on bacterial cells.<br><br>
          </p>
-    </div>
+</div>
-     <br><br>
+     <img src="https://static.igem.org/mediawiki/2014/5/5b/Nanjingchina_Gold.jpg" style="margin-left:10px"/>
-     <img src="https://static.igem.org/mediawiki/2014/6/61/Parts08.jpg" style="margin-left:20px"/>
+     <img src="https://static.igem.org/mediawiki/2014/a/a8/Nanjingchina_Gold2.jpg" style="margin-left:10px"/>
      <br><br>
      <div class="para">
-        <p>
-            <span style="font-weight:normal"><i>Figure1:<br>
-            a) Genetic organization of the gol locus in the S. typhimurium LT2 genome.
-                b) Genetic organization of the gold inductive RFP expression plasmid in E. coli.<br>
-            c) A photograph of E. coli cells containing the gold-induced RFP expression plasmid
-                with a concentration of 20 mM each of metal ions, or without metal ions induction and re-suspended in PBS buffer (pH 7.4).<br>
-            d) Fluorescence measurement of E. coli cells containing the goldinduced RFP
-                expression plasmid after gradient concentrations of HAuCl4 (Au3+) induction and re-suspended in PBS buffer (pH 7.4).<br>
-            e) A visible photograph of d.</i></span><br><br>
-            <span style=";font-size:22px">2 Experimental Section</span>
-            Gold selective sensing by engineered E.coli cell<br>
-            The gold selective sensing plasmid was constructed by two steps and all DNA fragment were amplified from
-            Salmonella typhimurium genomic DNA. First a 200bp DNA fragment including the gene encoding PgolTS was
-            amplified by the primers PgolS1 and PgolS2. The gene encoding golS and PgolB was amplified by the
-            primers GolS1 and PgolB2. Then these two fragments were connected by overlap PCR using PgolS1 and
-            PgolB2. After confirmed by sequencing, the PCR product was digested by EcoRI and XbaI, and then inserted into pSB1C3 vector.<br>
-        </p>
      </div>
      <br><br>
-<div name="002" id="002"></div>
      <img src="https://static.igem.org/mediawiki/2014/9/96/Wall.png" class="wall"/>
      <br><br>