Team:Arizona State/science

From 2014.igem.org

(Difference between revisions)
(Created page with "{{CSS/Main}} <html> <!--main content --> <table width="975" align="center"> <tr> <!--navigation menu --> <td align="center" colspan="3"> <table width="100%"> <tr heigth...")
 
(9 intermediate revisions not shown)
Line 3: Line 3:
<html>
<html>
 +
<style type="text/css">
 +
.navmenu ul {list-style: none;padding: 0px;margin: 0px; font-size 2em}
 +
  .navmenu ul li {display: block;position: relative;float: left;border:1px solid #fff;font-size: 12px}
 +
  .navmenu li ul {display: none;}
 +
  .navmenu ul li a {display: block;background: #903;padding: 5px 10px 5px 10px;text-decoration: none;
 +
          white-space: nowrap;color: #fff;}
 +
  .navmenu ul li a:hover {background: #ffb310;}
 +
  .navmenu li:hover ul {display: block; position: absolute;}
 +
  .navmenu li:hover li {float: none;}
 +
  .navmenu li:hover a {background: #ffb310;}
 +
  .navmenu li:hover li a:hover {background: #000;}
 +
  #drop-nav li ul li {border-top: 0px;}
 +
</style>
 +
 +
 +
 +
 
 +
 
 +
 +
<!--main content -->
<!--main content -->
Line 15: Line 35:
<table  width="100%">
<table  width="100%">
-
<tr heigth="15px"></tr>
+
<tr height="15px"></tr>
-
<tr heigth="75px">  
+
<tr> <td colspan="9"><a href="https://2014.igem.org/Main_Page" style="width:65px; float:right; margin-left:5px"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a>
 +
<div class="navmenu"> <ul id="drop-nav">
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State">home </a></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/team">team </a>
 +
      <ul><li><a href="https://2014.igem.org/Team:Arizona_State/members">members </a></li>
 +
        <li><a href="https://igem.org/Team.cgi?id=1502">iGEM profile </a></li></ul></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/project">project </a>
 +
      <ul><li><a href="https://2014.igem.org/Team:Arizona_State/science">science</a></li>
 +
        <li><a href="https://2014.igem.org/Team:Arizona_State/policypractices">policy and practices</a></li></ul></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/parts">parts </a></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/result">results </a></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/notebook">notebook </a></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/safety">safety </a></li>
 +
  <li><a href="https://2014.igem.org/Team:Arizona_State/attributions">attributions </a></li>
-
 
+
</ul></div>
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
</td> </tr>
-
<a href="https://2014.igem.org/Team:Arizona_State"style="color:#ffffff">home </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/team"style="color:#ffffff">team </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/teamprofile"style="color:#ffffff">team profile </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/project"style="color:#ffffff">project </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/parts"style="color:#ffffff">parts </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/modeling"style="color:#ffffff">modeling </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/notebook"style="color:#ffffff">notebook </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/notebook"style="color:#ffffff">safety </a> </td>
+
-
 
+
-
<td style="border:0px solid black;" align="center" height ="42px" onMouseOver="this.bgColor='#ffb310'" onMouseOut="this.bgColor='#990033'" bgColor=#990033> 
+
-
<a href="https://2014.igem.org/Team:Arizona_State/attributions"style="color:#ffffff">attributions </a> </td>
+
-
 
+
-
 
+
-
<td style="border: 0px solid black; background-color: #990033;" align="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
+
-
</tr>
+
</table>
</table>
Line 70: Line 74:
</td>
</td>
-
<td width="90%" ><p><strong style="font-size: 34px">The Arizona State University iGEM team</strong></p>
+
<td width="90%" ><p><strong style="font-size: 32px">Biodiesel Production in a Multi-Strain System</strong></p>
   <hr>
   <hr>
   <p>&nbsp;</p>
   <p>&nbsp;</p>
-
   <p><strong>Science</strong> <br>
+
   <p><strong>Current system of biodiesel production in E. coli</strong> <br>
-
    science</p>
+
    When attempting to produce biodiesel in E. Coli, certain problems emerge, especially surrounding the metabolic use of certain intermediate products. E. coli has to use the pyruvate from glycolysis to produce both intermediates of wax ethyl ester, ethanol and acyl-COAs. In order to circumvent this metabolic competition, we decided that specialization in a multi strain system would be our solution. Two colonies of E. Coli will create the intermediates individually, therefore avoiding competition for use of resources inside of the individual cells. With the two colonies growing together, a greater titer of the final product (FAEE's) can be accomplished.
 +
 
 +
<p><strong>Our Solution</strong>
 +
<br>
 +
The first intermediate, ethanol, is formed using a two enzyme plasmid. Pdc and adhB take pyruvate from glycolisis and convert it into first, acetaldehyde, and then into ethanol.
 +
<p>
 +
The second intermediates, acyl coa's, are formed with a thioesterase combined with the four components of the Acc plasmid (A,B,C,D). The two intermediates are combined with a wax-synthase and a coa-ligase to produce fatty acid ethyl esters.
 +
<p>&nbsp;</p>
 +
<img src="https://static.igem.org/mediawiki/2014/a/ae/Metabolic_pathway.jpg" alt="" align="center" height="400" >
 +
<p><strong>Plasmid Designs</strong><br>
 +
The two strains of E. Coli will both have one plasmid, containing all of the necessary genes to code for an entire intermediate path, with one of the plsmids also containing the genes for the final wax synthase/coa ligase step. Both plasmids would need resistance to the same antibiotic or set of antibiotics. Both strains will be placed in a culture together, and glucose will be fed.
 +
<p>&nbsp;</p>
 +
<img src="https://static.igem.org/mediawiki/2014/3/31/Plasmids.jpg" alt="" align="center" height="400" >
 +
 
 +
 
   <p>&nbsp;</p>
   <p>&nbsp;</p>
   <hr>
   <hr>
   <p>&nbsp;</p>
   <p>&nbsp;</p>
-
   <p><strong>Science</strong> <br>
+
   <p><strong>Future plans for this project</strong><br>
-
     science</p></td>
+
     There are some future objectives that can expand upon this project. Maximizing the production of ethanol and acyl-COAs without stopping normal cellular metabolism can optimize the production of the fatty ethyl esters. Another consideration is the balance between the ethanol and fatty acid populations. It is possible that more of one population is required to optimize production. Quorum sensing techniques could be used to track the two populations and reach an equilibrium with high production.  </p></td>
<td width="5%">&nbsp;</td>
<td width="5%">&nbsp;</td>
</tr>
</tr>

Latest revision as of 00:24, 18 October 2014

 

 

Biodiesel Production in a Multi-Strain System

 

Current system of biodiesel production in E. coli
When attempting to produce biodiesel in E. Coli, certain problems emerge, especially surrounding the metabolic use of certain intermediate products. E. coli has to use the pyruvate from glycolysis to produce both intermediates of wax ethyl ester, ethanol and acyl-COAs. In order to circumvent this metabolic competition, we decided that specialization in a multi strain system would be our solution. Two colonies of E. Coli will create the intermediates individually, therefore avoiding competition for use of resources inside of the individual cells. With the two colonies growing together, a greater titer of the final product (FAEE's) can be accomplished.

Our Solution
The first intermediate, ethanol, is formed using a two enzyme plasmid. Pdc and adhB take pyruvate from glycolisis and convert it into first, acetaldehyde, and then into ethanol.

The second intermediates, acyl coa's, are formed with a thioesterase combined with the four components of the Acc plasmid (A,B,C,D). The two intermediates are combined with a wax-synthase and a coa-ligase to produce fatty acid ethyl esters.

 

Plasmid Designs
The two strains of E. Coli will both have one plasmid, containing all of the necessary genes to code for an entire intermediate path, with one of the plsmids also containing the genes for the final wax synthase/coa ligase step. Both plasmids would need resistance to the same antibiotic or set of antibiotics. Both strains will be placed in a culture together, and glucose will be fed.

 

 

 

Future plans for this project
There are some future objectives that can expand upon this project. Maximizing the production of ethanol and acyl-COAs without stopping normal cellular metabolism can optimize the production of the fatty ethyl esters. Another consideration is the balance between the ethanol and fatty acid populations. It is possible that more of one population is required to optimize production. Quorum sensing techniques could be used to track the two populations and reach an equilibrium with high production.

 

Retrieved from "http://2014.igem.org/Team:Arizona_State/science"