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Team:Evry/Notebook/Transposons/15.10.14
From 2014.igem.org
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<br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s | <br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s | ||
<br><br></p> | <br><br></p> | ||
| - | <img src="https://static.igem.org/mediawiki/2014/6/6c/Kan.JPG" width="50%"/></div> | + | <div align="center"><img src="https://static.igem.org/mediawiki/2014/6/6c/Kan.JPG" width="50%"/></div> |
<br><br><p> | <br><br><p> | ||
PCR for <i>Pseudovibrio denitrificans</i> specific oligo: | PCR for <i>Pseudovibrio denitrificans</i> specific oligo: | ||
<br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s | <br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s | ||
<br><br></p> | <br><br></p> | ||
| - | <img src="https://static.igem.org/mediawiki/2014/e/e7/Evry_Pseudo_spe.JPG" width="50%"/></div> | + | <div align="center"><img src="https://static.igem.org/mediawiki/2014/e/e7/Evry_Pseudo_spe.JPG" width="50%"/></div> |
<br><br><p> | <br><br><p> | ||
As a control we tested the specificity of our oligo on the strain we work with: | As a control we tested the specificity of our oligo on the strain we work with: | ||
| - | <br><img src="https://static.igem.org/mediawiki/2014/0/0b/Pseudo_spe.JPG"width="50%"/></div> | + | <br><div align="center"><img src="https://static.igem.org/mediawiki/2014/0/0b/Pseudo_spe.JPG"width="50%"/></div> |
<br></p> | <br></p> | ||
Latest revision as of 23:01, 17 October 2014
14.10.2014 ligation
it gave only one clone.
Clone culture:
5 ml LB + 5 ul Kan (25 mg/ml) - 37 C°
Transformation Pseudovibrio denitrificans & Dh5 alpha with mRFP in BBa_1413044
electrocompetent cells:
1 mm cuvette; 1800 V
recuperation media: MB for Pseudovibrio denitrificans , LB for DH5alpha
plating:
MB agar for Pseudovibrio denitrificans
LB agar for LB for DH5alpha
Transformation Pseudovibrio denitrificans & Dh5 alpha with BBa_1413001 in BBa_1413044
electrocompetent cells:
1 mm cuvette; 1800 V
recuperation media: MB for Pseudovibrio denitrificans , LB for DH5alpha
plating:
MB agar for Pseudovibrio denitrificans
LB agar for LB for DH5alpha
Verification testing of pnK2 in Pseudovibrio denitrificans
16 clones of Pseudovibrio denitrificans were grown in 3 ml MB, 30 C°, 24h
DNA extraction:
Invitrogen DNA extraction kit used with the Gram - protocol.
nanodrops gave value between 80 ng/ul & 130 ng/ul
PCR for Kan gene insertion:
PCR: enzyme: Q5; template: 200 ng genomic preparation Pseudovibrio denitrificans; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s
PCR for Pseudovibrio denitrificans specific oligo:
PCR: enzyme: Q5; template: 200 ng genomic preparation Pseudovibrio denitrificans; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s
As a control we tested the specificity of our oligo on the strain we work with:
Oct 15
