Team:Vanderbilt Software/Project

From 2014.igem.org

(Difference between revisions)
(Prototype team page)
 
(4 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
 
-
 
-
 
{{CSS/Main}}
{{CSS/Main}}
Line 7: Line 4:
<html>
<html>
-
<!--main content -->
+
  <!--main content -->
-
<table width="70%" align="center">
+
  <table width="70%" align="center">
 +
    <!--navigation menu -->
 +
    <td align="center" colspan="3">
-
<!--welcome box -->
+
      <table  width="100%">
-
<tr>
+
        <tr heigth="15px"></tr>
-
<td style="border:1px solid black;" colspan="3" align="center" height="150px" bgColor=#FF404B>
+
        <tr heigth="75px">
-
<h1 >WELCOME TO iGEM 2014! </h1>
+
-
<p>Your team has been approved and you are ready to start the iGEM season!
+
-
<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
+
-
<br>
+
-
<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Vanderbilt_Software/Project&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
+
-
</td>
+
-
</tr>
+
-
<tr> <td colspan="3"  height="5px"> </td></tr>
 
-
<!-- end welcome box -->
 
-
<tr>
 
-
<!--navigation menu -->
+
            <td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
-
<td align="center" colspan="3">
+
              <a href="https://2014.igem.org/Team:Vanderbilt_Software"style="color:#000000">Home</a> </td>
-
<table width="100%">
+
            <td style="border:1px solid black" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
-
<tr heigth="15px"></tr>
+
              <a href="https://2014.igem.org/Team:Vanderbilt_Software/Project"style="color:#000000"> Project</a></td>
-
<tr heigth="75px">  
+
 +
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 +
              <a href="https://2014.igem.org/Team:Vanderbilt_Software/Program"style="color:#000000">Program</a> </td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
            <td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software"style="color:#000000">Home </a> </td>
+
              <a href="https://2014.igem.org/Team:Vanderbilt_Software/Team"style="color:#000000"> Team </a> </td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
            <td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Team"style="color:#000000"> Team </a> </td>
+
              <a href="https://2014.igem.org/Team:Vanderbilt_Software/Attributions"style="color:#000000"> Attributions </a></td>
-
<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://igem.org/Team.cgi?year=2014&team_name=Vanderbilt_Software"style="color:#000000"> Official Team Profile </a></td>
 
-
<td style="border:1px solid black" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
+
          <td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Project"style="color:#000000"> Project</a></td>
+
        </tr>
-
 
+
      </table>
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Parts"style="color:#000000"> Parts</a></td>
+
-
 
+
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Modeling"style="color:#000000"> Modeling</a></td>
+
-
 
+
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
+
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Notebook"style="color:#000000"> Notebook</a></td>
+
-
 
+
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Safety"style=" color:#000000"> Safety </a></td>
+
-
 
+
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
-
<a href="https://2014.igem.org/Team:Vanderbilt_Software/Attributions"style="color:#000000"> Attributions </a></td>
+
-
 
+
-
 
+
-
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
+
-
</tr>
+
-
</table>
+
</tr>
</tr>
Line 78: Line 47:
<!--Project content  -->
<!--Project content  -->
<tr><td > <h3> Project Description </h3></td>
<tr><td > <h3> Project Description </h3></td>
-
<td ></td >
+
  <td ></td >
-
<td > <h3> Content</h3></td>
+
  <td > <h3>Sections</h3></td>
</tr>
</tr>
<tr>
<tr>
-
<td width="45%"  valign="top">  
+
  <td width="45%"  valign="top">
-
<p>Tell us more about your project. Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs) </p>
+
    <p>Darwin is a software package to document changes to DNA which allows for easy, standardized, and collaborative editing on DNA data up to the genome scale. It builds off of tested and proven version control software, so the entire history of the tracked data is easy to browse and transfer. But Darwin is specifically focused on DNA data, speeding up the tracking process and offering significant security improvements from any current system.</p>
-
<br>
+
-
<h3>References </h3>
+
-
<p>
+
-
iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you though about your project and what works inspired you. </p>
+
-
</td>
+
-
<td></td>
+
      <p>Because Darwin uses existing version control systems, the majority of the heavy lifting is complete already; Darwin can be installed right on top of the existing software. Darwin's contribution is to parse and format the biological data so that it can be used more effectively with these systems. It uses a variety of heuristics to effectively split the data and granularize the changes made to produce change logging orders of magnitude more time- and space-efficient than any other method.</p>
-
<td  width="45%"  valign="top">
+
-
<p> You can use these subtopics to further explain your project</p>
+
-
<ol>
 
-
<li>Overall project summary</li>
 
-
<li>Project Details</li>
 
-
<li>Materials and Methods</li>
 
-
<li>The Experiments</li>
 
-
<li>Results</li>
 
-
<li>Data analysis</li>
 
-
<li>Conclusions</li>
 
-
</ol>
 
-
<p>
+
      <h3>Current Status</h3>
-
It's important for teams to describe all the creativity that goes into an iGEM project, along with all the great ideas your team will come up with over the course of your work.  
+
      <p>The project in its current status can be found in its <a href="http://github.com/igemsoftware/Vanderbilt_2014">repository on github</a>. Documentation on the produced software tool can be found on the <a href="https://2014.igem.org/Team:Vanderbilt_Software/Program">Program</a> page</p>
-
</p>
+
-
<p>
+
  </td>
-
It's also important to clearly describe your achievements so that judges will know what you tried to do and where you succeeded. Please write your project page such that what you achieved is easy to distinguish from what you attempted.
+
-
</p>
+
-
</td>
+
  <td></td>
 +
  <td  width="45%"  valign="top">
 +
    <p>The project description is split into four main sections:</p>
 +
    <ol>
 +
      <li><a href="https://2014.igem.org/Team:Vanderbilt_Software/Motivation">Motivation</a></li>
 +
      <li>Process</li>
 +
      <li>Experimentation</li>
 +
      <li>Conclusions</li>
 +
    </ol>
 +
 
 +
    <p>
 +
      It's important for teams to describe all the creativity that goes into an iGEM project, along with all the great ideas your team will come up with over the course of your work.
 +
    </p>
 +
 
 +
    <p>
 +
      It's also important to clearly describe your achievements so that judges will know what you tried to do and where you succeeded. Please write your project page such that what you achieved is easy to distinguish from what you attempted.
 +
    </p>
 +
 
 +
  </td>
</tr>
</tr>

Latest revision as of 22:35, 17 October 2014


Home Project Program Team Attributions

Project Description

Sections

Darwin is a software package to document changes to DNA which allows for easy, standardized, and collaborative editing on DNA data up to the genome scale. It builds off of tested and proven version control software, so the entire history of the tracked data is easy to browse and transfer. But Darwin is specifically focused on DNA data, speeding up the tracking process and offering significant security improvements from any current system.

Because Darwin uses existing version control systems, the majority of the heavy lifting is complete already; Darwin can be installed right on top of the existing software. Darwin's contribution is to parse and format the biological data so that it can be used more effectively with these systems. It uses a variety of heuristics to effectively split the data and granularize the changes made to produce change logging orders of magnitude more time- and space-efficient than any other method.

Current Status

The project in its current status can be found in its repository on github. Documentation on the produced software tool can be found on the Program page

The project description is split into four main sections:

  1. Motivation
  2. Process
  3. Experimentation
  4. Conclusions

It's important for teams to describe all the creativity that goes into an iGEM project, along with all the great ideas your team will come up with over the course of your work.

It's also important to clearly describe your achievements so that judges will know what you tried to do and where you succeeded. Please write your project page such that what you achieved is easy to distinguish from what you attempted.

Retrieved from "http://2014.igem.org/Team:Vanderbilt_Software/Project"