Team:William and Mary/parts

From 2014.igem.org

(Difference between revisions)
 
(13 intermediate revisions not shown)
Line 1: Line 1:
<html class="html" lang="en-US">
<html class="html" lang="en-US">
  <head>
  <head>
 +
<style media="screen" type="text/css">
 +
 +
#globalWrapper{
 +
    padding-bottom: 0px;
 +
}
 +
 +
#content{
 +
    width: 100%;
 +
}
 +
 +
/* Removes header footer and borders */
 +
#contentSub, #search-controls, .firstHeading, #footer-box, #catlinks, #p-logo {
 +
    display:none;}
 +
#top-section {
 +
    border: none;
 +
    height: 0px;}
 +
#content {
 +
    border: none;}
 +
 +
/* Removes "teams" from the menubar */
 +
#menubar.left-menu.noprint > ul > li:last-child {
 +
    display: none;}
 +
/* Resizes the menubar to fik the links (default is 400px) */
 +
#menubar {
 +
    width: auto;}
 +
 +
 +
body {
 +
    margin: 10px 0 0 0;
 +
    padding: 0;}
 +
#top-section {
 +
    width: 965px;
 +
    height: 0;
 +
    margin: 0 auto;
 +
    padding: 0;
 +
    border: none;}
 +
#menubar {
 +
    font-size: 65%;
 +
    top: -14px;}
 +
.left-menu:hover {
 +
    background-color: transparent;}
 +
#menubar li a {
 +
    background-color: transparent;}
 +
#menubar:hover {
 +
    color: white;}
 +
#menubar li a {
 +
    color: transparent;}
 +
#menubar:hover li a {
 +
    color: white;}
 +
 +
</style>
   <script type="text/javascript">
   <script type="text/javascript">
-
   if(typeof Muse == "undefined") window.Muse = {}; window.Muse.assets = {"required":["https://2014.igem.org/Team:William_and_Mary/wm_jquery-1.8.3.min.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_museutiles.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_jquery.watch.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_jquery.musemenu.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_webpro.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_musewpslideshow.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_jquery.museoverlay.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_touchswipe.js?action=raw&amp;ctype=text/javascript", "https://2014.igem.org/Team:William_and_Mary/wm_parts.css?action=raw&amp;ctype=text/css"], "outOfDate":[]};
+
   if(typeof Muse == "undefined") window.Muse = {}; window.Muse.assets = {"required":["jquery-1.8.3.min.js", "museutils.js", "jquery.watch.js", "jquery.musemenu.js", "parts.css"], "outOfDate":[]};
</script>
</script>
-
 
    
    
   <meta http-equiv="Content-type" content="text/html;charset=UTF-8"/>
   <meta http-equiv="Content-type" content="text/html;charset=UTF-8"/>
Line 19: Line 69:
   <!-- JS includes -->
   <!-- JS includes -->
   <!--[if lt IE 9]>
   <!--[if lt IE 9]>
-
   <script src="https://2014.igem.org/Team:William_and_Mary/wm_html5shiv.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
   <script src="scripts/html5shiv.js?4241844378" type="text/javascript"></script>
   <![endif]-->
   <![endif]-->
   </head>
   </head>
Line 64: Line 114:
     </div>
     </div>
     </nav>
     </nav>
-
     <div class="PamphletWidget clearfix colelem" id="pamphletu685"><!-- none box -->
+
     <div class="clearfix colelem" id="pu1181-65"><!-- group -->
-
    <div class="popup_anchor" id="u695popup">
+
    <div class="clearfix grpelem" id="u1181-65"><!-- content -->
-
      <div class="ContainerGroup clearfix" id="u695"><!-- stack box -->
+
      <p id="u1181-2">ChR1</p>
-
      <div class="Container clearfix grpelem" id="u696"><!-- group -->
+
      <p id="u1181-4">Channelrhodopsin&#45;1, or ChR1, is a light&#45;gated ion channel. Responding to light of approximately 560 nm (yellow light), ChR1 is a non&#45;specific cation channel, allowing the influx of ions such as calcium into cells. Unfortunately, ChR1 contained two internal PstI cutsites, which needed to be mutated out before it could be put into a biobrick backbone.</p>
-
        <div class="clearfix grpelem" id="u697-65"><!-- content -->
+
      <p id="u1181-5">&nbsp;</p>
-
        <p id="u697-2">ChR1</p>
+
      <p id="u1181-6">&nbsp;</p>
-
        <p id="u697-4">Channelrhodopsin&#45;1, or ChR1, is a light&#45;gated ion channel. Responding to light of approximately 560 nm (yellow light), ChR1 is a non&#45;specific cation channel, allowing the influx of ions such as calcium into cells. Unfortunately, ChR1 contained two internal PstI cutsites, which needed to be mutated out before it could be put into a biobrick backbone.</p>
+
      <p id="u1181-7">&nbsp;</p>
-
        <p id="u697-5">&nbsp;</p>
+
      <p id="u1181-8">&nbsp;</p>
-
        <p id="u697-6">&nbsp;</p>
+
      <p id="u1181-9">&nbsp;</p>
-
        <p id="u697-7">&nbsp;</p>
+
      <p id="u1181-10">&nbsp;</p>
-
        <p id="u697-8">&nbsp;</p>
+
      <p id="u1181-11">&nbsp;</p>
-
        <p id="u697-9">&nbsp;</p>
+
      <p id="u1181-12">&nbsp;</p>
-
        <p id="u697-10">&nbsp;</p>
+
      <p id="u1181-13">&nbsp;</p>
-
        <p id="u697-11">&nbsp;</p>
+
      <p id="u1181-14">&nbsp;</p>
-
        <p id="u697-12">&nbsp;</p>
+
      <p id="u1181-15">&nbsp;</p>
-
        <p id="u697-13">&nbsp;</p>
+
      <p id="u1181-16">&nbsp;</p>
-
        <p id="u697-14">&nbsp;</p>
+
      <p id="u1181-17">&nbsp;</p>
-
        <p id="u697-15">&nbsp;</p>
+
      <p id="u1181-18">&nbsp;</p>
-
        <p id="u697-16">&nbsp;</p>
+
      <p id="u1181-19">&nbsp;</p>
-
        <p id="u697-17">&nbsp;</p>
+
      <p id="u1181-20">&nbsp;</p>
-
        <p id="u697-18">&nbsp;</p>
+
      <p id="u1181-21">&nbsp;</p>
-
        <p id="u697-19">&nbsp;</p>
+
      <p id="u1181-22">&nbsp;</p>
-
        <p id="u697-20">&nbsp;</p>
+
      <p id="u1181-23">&nbsp;</p>
-
        <p id="u697-21">&nbsp;</p>
+
      <p id="u1181-24">&nbsp;</p>
-
        <p id="u697-22">&nbsp;</p>
+
      <p id="u1181-25">&nbsp;</p>
-
        <p id="u697-23">&nbsp;</p>
+
      <p id="u1181-26">&nbsp;</p>
-
        <p id="u697-24">&nbsp;</p>
+
      <p id="u1181-27">&nbsp;</p>
-
        <p id="u697-25">&nbsp;</p>
+
      <p id="u1181-28">&nbsp;</p>
-
        <p id="u697-26">&nbsp;</p>
+
      <p id="u1181-29">&nbsp;</p>
-
        <p id="u697-27">&nbsp;</p>
+
      <p id="u1181-30">&nbsp;</p>
-
        <p id="u697-28">&nbsp;</p>
+
      <p id="u1181-34">See our part in the Registry at: <a class="nonblock" href="http://parts.igem.org/Part:BBa_K1409000">parts.igem.org/Part:BBa_K1409000</a></p>
-
        <p id="u697-29">&nbsp;</p>
+
      <p id="u1181-36">This part is originally from the lab of Dr. Karl Deisseroth at Stanford University and was purchased from Addgene.</p>
-
        <p id="u697-30">&nbsp;</p>
+
      <p id="u1181-37">&nbsp;</p>
-
        <p id="u697-34">See our part in the Registry at: <a class="nonblock" href="http://parts.igem.org/Part:BBa_K1409000">parts.igem.org/Part:BBa_K1409000</a></p>
+
      <p id="u1181-38">&nbsp;</p>
-
        <p id="u697-36">This part is originally from the lab of Dr. Karl Deisseroth at Stanford University and was purchased from Addgene.</p>
+
      <p id="u1181-39">&nbsp;</p>
-
        <p id="u697-37">&nbsp;</p>
+
      <p id="u1181-40">&nbsp;</p>
-
        <p id="u697-38">&nbsp;</p>
+
      <p id="u1181-41">&nbsp;</p>
-
        <p id="u697-39">&nbsp;</p>
+
      <p id="u1181-42">&nbsp;</p>
-
        <p id="u697-40">&nbsp;</p>
+
      <p id="u1181-43">&nbsp;</p>
-
        <p id="u697-41">&nbsp;</p>
+
      <p id="u1181-44">&nbsp;</p>
-
        <p id="u697-42">&nbsp;</p>
+
      <p id="u1181-45">&nbsp;</p>
-
        <p id="u697-43">&nbsp;</p>
+
      <p id="u1181-46">&nbsp;</p>
-
        <p id="u697-44">&nbsp;</p>
+
      <p id="u1181-47">&nbsp;</p>
-
        <p id="u697-45">&nbsp;</p>
+
      <p id="u1181-48">&nbsp;</p>
-
        <p id="u697-46">&nbsp;</p>
+
      <p id="u1181-49">&nbsp;</p>
-
        <p id="u697-47">&nbsp;</p>
+
      <p id="u1181-50">&nbsp;</p>
-
        <p id="u697-48">&nbsp;</p>
+
      <p id="u1181-51">&nbsp;</p>
-
        <p id="u697-49">&nbsp;</p>
+
      <p id="u1181-52">&nbsp;</p>
-
        <p id="u697-50">&nbsp;</p>
+
      <p id="u1181-53">&nbsp;</p>
-
        <p id="u697-51">&nbsp;</p>
+
      <p id="u1181-54">&nbsp;</p>
-
        <p id="u697-52">&nbsp;</p>
+
      <p id="u1181-55">&nbsp;</p>
-
        <p id="u697-53">&nbsp;</p>
+
      <p id="u1181-56">&nbsp;</p>
-
        <p id="u697-54">&nbsp;</p>
+
      <p id="u1181-57">&nbsp;</p>
-
        <p id="u697-55">&nbsp;</p>
+
      <p id="u1181-58">&nbsp;</p>
-
        <p id="u697-56">&nbsp;</p>
+
      <p id="u1181-59">&nbsp;</p>
-
        <p id="u697-57">&nbsp;</p>
+
      <p id="u1181-60">&nbsp;</p>
-
        <p id="u697-58">&nbsp;</p>
+
      <p id="u1181-61">&nbsp;</p>
-
        <p id="u697-59">&nbsp;</p>
+
      <p id="u1181-62">&nbsp;</p>
-
        <p id="u697-60">&nbsp;</p>
+
      <p id="u1181-63">&nbsp;</p>
-
        <p id="u697-61">&nbsp;</p>
+
-
        <p id="u697-62">&nbsp;</p>
+
-
        <p id="u697-63">&nbsp;</p>
+
-
        </div>
+
-
        <div class="clip_frame clearfix grpelem" id="u898"><!-- image -->
+
-
        <div id="u898_clip">
+
-
          <img class="position_content" id="u898_img" src="https://static.igem.org/mediawiki/2014/b/bf/WM_chr1.jpg" alt="" width="479" height="425"/>
+
-
        </div>
+
-
        </div>
+
-
      </div>
+
-
      <div class="Container invi clearfix grpelem" id="u706"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u707-35"><!-- content -->
+
-
        <p id="u707-2">ChR2</p>
+
-
        <p id="u707-4">Channelrhodopsin&#45;2 (ChR2), is another channelrhodopsin. The key differerence between ChR2 and ChR1 is that ChR2 absorbs blue light. ChR2 also contained an internal PstI cutsite that needed to be dealt with.</p>
+
-
        <p id="u707-5">&nbsp;</p>
+
-
        <p id="u707-6">&nbsp;</p>
+
-
        <p id="u707-7">&nbsp;</p>
+
-
        <p id="u707-8">&nbsp;</p>
+
-
        <p id="u707-9">&nbsp;</p>
+
-
        <p id="u707-10">&nbsp;</p>
+
-
        <p id="u707-11">&nbsp;</p>
+
-
        <p id="u707-12">&nbsp;</p>
+
-
        <p id="u707-13">&nbsp;</p>
+
-
        <p id="u707-14">&nbsp;</p>
+
-
        <p id="u707-15">&nbsp;</p>
+
-
        <p id="u707-16">&nbsp;</p>
+
-
        <p id="u707-17">&nbsp;</p>
+
-
        <p id="u707-18">&nbsp;</p>
+
-
        <p id="u707-19">&nbsp;</p>
+
-
        <p id="u707-20">&nbsp;</p>
+
-
        <p id="u707-21">&nbsp;</p>
+
-
        <p id="u707-22">&nbsp;</p>
+
-
        <p id="u707-23">&nbsp;</p>
+
-
        <p id="u707-24">&nbsp;</p>
+
-
        <p id="u707-25">&nbsp;</p>
+
-
        <p id="u707-26">&nbsp;</p>
+
-
        <p id="u707-27">&nbsp;</p>
+
-
        <p id="u707-28">&nbsp;</p>
+
-
        <p id="u707-29">&nbsp;</p>
+
-
        <p id="u707-30">&nbsp;</p>
+
-
        <p id="u707-31">&nbsp;</p>
+
-
        <p id="u707-33">This part is originally from the lab of Dr. Karel Svoboda at Janelia Farm and was purchased from Addgene.</p>
+
-
        </div>
+
-
        <div class="clip_frame grpelem" id="u786"><!-- image -->
+
-
        <img class="block" id="u786_img" src="https://static.igem.org/mediawiki/2014/d/d6/WM_Chr2.jpg" alt="" width="476" height="422"/>
+
-
        </div>
+
-
      </div>
+
-
      <div class="Container invi clearfix grpelem" id="u701"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u702-37"><!-- content -->
+
-
        <p id="u702-2"><span id="u702">CatCh</span></p>
+
-
        <p id="u702-4">CatCh, or Calcium Relocating Channelrhodopsin, is a channelrhodopsin with an increased Ca2+ permeability. CatCh also had two internal PstI cutsites that were mutated out.</p>
+
-
        <p id="u702-5">&nbsp;</p>
+
-
        <p id="u702-6">&nbsp;</p>
+
-
        <p id="u702-7">&nbsp;</p>
+
-
        <p id="u702-8">&nbsp;</p>
+
-
        <p id="u702-9">&nbsp;</p>
+
-
        <p id="u702-10">&nbsp;</p>
+
-
        <p id="u702-11">&nbsp;</p>
+
-
        <p id="u702-12">&nbsp;</p>
+
-
        <p id="u702-13">&nbsp;</p>
+
-
        <p id="u702-14">&nbsp;</p>
+
-
        <p id="u702-15">&nbsp;</p>
+
-
        <p id="u702-16">&nbsp;</p>
+
-
        <p id="u702-17">&nbsp;</p>
+
-
        <p id="u702-18">&nbsp;</p>
+
-
        <p id="u702-19">&nbsp;</p>
+
-
        <p id="u702-20">&nbsp;</p>
+
-
        <p id="u702-21">&nbsp;</p>
+
-
        <p id="u702-22">&nbsp;</p>
+
-
        <p id="u702-23">&nbsp;</p>
+
-
        <p id="u702-24">&nbsp;</p>
+
-
        <p id="u702-25">&nbsp;</p>
+
-
        <p id="u702-26">&nbsp;</p>
+
-
        <p id="u702-27">&nbsp;</p>
+
-
        <p id="u702-28">&nbsp;</p>
+
-
        <p id="u702-29">&nbsp;</p>
+
-
        <p id="u702-33">See our part in the Registry at: <a class="nonblock" href="http://parts.igem.org/Part:BBa_K1409001">parts.igem.org/Part:BBa_K1409001</a></p>
+
-
        <p id="u702-35">This part is originally from the lab of Dr. Peter Hegemann at Humboldt&#45;Universität in Berlin.</p>
+
-
        </div>
+
-
        <div class="clip_frame grpelem" id="u792"><!-- image -->
+
-
        <img class="block" id="u792_img" src="https://static.igem.org/mediawiki/2014/5/5e/WM_Catch.jpg" alt="" width="476" height="422"/>
+
-
        </div>
+
-
      </div>
+
-
      <div class="Container invi clearfix grpelem" id="u727"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u744-30"><!-- content -->
+
-
        <p id="u744-2"><span id="u744">GCaMP/RCaMP</span></p>
+
-
        <p id="u744-4">GCaMP, a Genetically Encoded Calcium Indicator (or GECI), is a protein created from the fusion of GFP, calmodulin (a calcium binding messenger protein), and M13 (a sequence from myosin light chain kinase). When calcium binds to CaM, conformational changes in the protein cause a change in the intensity of the fluorescence of GFP.</p>
+
-
        <p id="u744-5">&nbsp;</p>
+
-
        <p id="u744-7">Functioning in much the same way as GCaMP, RCaMP is another GECI made from mRuby instead of GFP, and fluorescing red instead of green.</p>
+
-
        <p id="u744-8">&nbsp;</p>
+
-
        <p id="u744-9">&nbsp;</p>
+
-
        <p id="u744-10">&nbsp;</p>
+
-
        <p id="u744-11">&nbsp;</p>
+
-
        <p id="u744-12">&nbsp;</p>
+
-
        <p id="u744-13">&nbsp;</p>
+
-
        <p id="u744-14">&nbsp;</p>
+
-
        <p id="u744-15">&nbsp;</p>
+
-
        <p id="u744-16">&nbsp;</p>
+
-
        <p id="u744-17">&nbsp;</p>
+
-
        <p id="u744-18">&nbsp;</p>
+
-
        <p id="u744-19">&nbsp;</p>
+
-
        <p id="u744-20">&nbsp;</p>
+
-
        <p id="u744-21">&nbsp;</p>
+
-
        <p id="u744-22">&nbsp;</p>
+
-
        <p id="u744-23">&nbsp;</p>
+
-
        <p id="u744-24">&nbsp;</p>
+
-
        <p id="u744-25">&nbsp;</p>
+
-
        <p id="u744-26">&nbsp;</p>
+
-
        <p id="u744-28">The green fluorescence in this image is a result of the binding of calcium to GCAMP. This image was obtained from the lab of Dr. Margaret Saha at the College of William and Mary, from which we also acquired samples of GCaMP and RCaMP.</p>
+
-
        </div>
+
-
        <div class="clip_frame grpelem" id="u814"><!-- image -->
+
-
        <img class="block" id="u814_img" src="https://static.igem.org/mediawiki/2014/4/45/WM_Wendy_gcamp.png" alt="" width="344" height="342"/>
+
-
        </div>
+
-
      </div>
+
-
      </div>
+
     </div>
     </div>
-
     <div class="ThumbGroup clearfix grpelem" id="u688"><!-- none box -->
+
     <div class="clip_frame clearfix grpelem" id="u1182"><!-- image -->
-
       <div class="popup_anchor">
+
       <div id="u1182_clip">
-
      <div class="Thumb popup_element clearfix" id="u693"><!-- group -->
+
       <img class="position_content" id="u1182_img" src="https://static.igem.org/mediawiki/2014/b/bf/WM_chr1.jpg" alt="" width="479" height="425"/>
-
        <div class="clearfix grpelem" id="u694-4"><!-- content -->
+
-
        <p>ChR1</p>
+
-
        </div>
+
-
       </div>
+
-
      </div>
+
-
      <div class="popup_anchor">
+
-
      <div class="Thumb popup_element clearfix" id="u689"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u690-4"><!-- content -->
+
-
        <p>ChR2</p>
+
-
        </div>
+
-
      </div>
+
-
      </div>
+
-
      <div class="popup_anchor">
+
-
      <div class="Thumb popup_element clearfix" id="u691"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u692-4"><!-- content -->
+
-
        <p>CatCh</p>
+
-
        </div>
+
-
      </div>
+
-
      </div>
+
-
      <div class="popup_anchor">
+
-
      <div class="Thumb popup_element clearfix" id="u733"><!-- group -->
+
-
        <div class="clearfix grpelem" id="u740-4"><!-- content -->
+
-
        <p>GCaMP/RCaMP</p>
+
-
        </div>
+
-
      </div>
+
       </div>
       </div>
 +
    </div>
 +
    <div class="clearfix grpelem" id="u1185-35"><!-- content -->
 +
      <p id="u1185-2">ChR2</p>
 +
      <p id="u1185-4">Channelrhodopsin&#45;2 (ChR2), is another channelrhodopsin. The key differerence between ChR2 and ChR1 is that ChR2 absorbs blue light. ChR2 also contained an internal PstI cutsite that needed to be dealt with.</p>
 +
      <p id="u1185-5">&nbsp;</p>
 +
      <p id="u1185-6">&nbsp;</p>
 +
      <p id="u1185-7">&nbsp;</p>
 +
      <p id="u1185-8">&nbsp;</p>
 +
      <p id="u1185-9">&nbsp;</p>
 +
      <p id="u1185-10">&nbsp;</p>
 +
      <p id="u1185-11">&nbsp;</p>
 +
      <p id="u1185-12">&nbsp;</p>
 +
      <p id="u1185-13">&nbsp;</p>
 +
      <p id="u1185-14">&nbsp;</p>
 +
      <p id="u1185-15">&nbsp;</p>
 +
      <p id="u1185-16">&nbsp;</p>
 +
      <p id="u1185-17">&nbsp;</p>
 +
      <p id="u1185-18">&nbsp;</p>
 +
      <p id="u1185-19">&nbsp;</p>
 +
      <p id="u1185-20">&nbsp;</p>
 +
      <p id="u1185-21">&nbsp;</p>
 +
      <p id="u1185-22">&nbsp;</p>
 +
      <p id="u1185-23">&nbsp;</p>
 +
      <p id="u1185-24">&nbsp;</p>
 +
      <p id="u1185-25">&nbsp;</p>
 +
      <p id="u1185-26">&nbsp;</p>
 +
      <p id="u1185-27">&nbsp;</p>
 +
      <p id="u1185-28">&nbsp;</p>
 +
      <p id="u1185-29">&nbsp;</p>
 +
      <p id="u1185-30">&nbsp;</p>
 +
      <p id="u1185-31">&nbsp;</p>
 +
      <p id="u1185-33">This part is originally from the lab of Dr. Karel Svoboda at Janelia Farm and was purchased from Addgene.</p>
 +
    </div>
 +
    <div class="clip_frame grpelem" id="u1186"><!-- image -->
 +
      <img class="block" id="u1186_img" src="https://static.igem.org/mediawiki/2014/d/d6/WM_Chr2.jpg" alt="" width="476" height="422"/>
 +
    </div>
 +
    </div>
 +
    <div class="clearfix colelem" id="pu1189-37"><!-- group -->
 +
    <div class="clearfix grpelem" id="u1189-37"><!-- content -->
 +
      <p id="u1189-2"><span id="u1189">CatCh</span></p>
 +
      <p id="u1189-4">CatCh, or Calcium Relocating Channelrhodopsin, is a channelrhodopsin with an increased Ca2+ permeability. CatCh also had two internal PstI cutsites that were mutated out.</p>
 +
      <p id="u1189-5">&nbsp;</p>
 +
      <p id="u1189-6">&nbsp;</p>
 +
      <p id="u1189-7">&nbsp;</p>
 +
      <p id="u1189-8">&nbsp;</p>
 +
      <p id="u1189-9">&nbsp;</p>
 +
      <p id="u1189-10">&nbsp;</p>
 +
      <p id="u1189-11">&nbsp;</p>
 +
      <p id="u1189-12">&nbsp;</p>
 +
      <p id="u1189-13">&nbsp;</p>
 +
      <p id="u1189-14">&nbsp;</p>
 +
      <p id="u1189-15">&nbsp;</p>
 +
      <p id="u1189-16">&nbsp;</p>
 +
      <p id="u1189-17">&nbsp;</p>
 +
      <p id="u1189-18">&nbsp;</p>
 +
      <p id="u1189-19">&nbsp;</p>
 +
      <p id="u1189-20">&nbsp;</p>
 +
      <p id="u1189-21">&nbsp;</p>
 +
      <p id="u1189-22">&nbsp;</p>
 +
      <p id="u1189-23">&nbsp;</p>
 +
      <p id="u1189-24">&nbsp;</p>
 +
      <p id="u1189-25">&nbsp;</p>
 +
      <p id="u1189-26">&nbsp;</p>
 +
      <p id="u1189-27">&nbsp;</p>
 +
      <p id="u1189-28">&nbsp;</p>
 +
      <p id="u1189-29">&nbsp;</p>
 +
      <p id="u1189-33">See our part in the Registry at: <a class="nonblock" href="http://parts.igem.org/Part:BBa_K1409001">parts.igem.org/Part:BBa_K1409001</a></p>
 +
      <p id="u1189-35">This part is originally from the lab of Dr. Peter Hegemann at Humboldt&#45;Universität in Berlin.</p>
 +
    </div>
 +
    <div class="clip_frame grpelem" id="u1193"><!-- image -->
 +
      <img class="block" id="u1193_img" src="https://static.igem.org/mediawiki/2014/5/5e/WM_Catch.jpg" alt="" width="476" height="422"/>
 +
    </div>
 +
    </div>
 +
    <div class="clearfix colelem" id="pu1196-30"><!-- group -->
 +
    <div class="clearfix grpelem" id="u1196-30"><!-- content -->
 +
      <p id="u1196-2"><span id="u1196">GCaMP/RCaMP</span></p>
 +
      <p id="u1196-4">GCaMP, a Genetically Encoded Calcium Indicator (or GECI), is a protein created from the fusion of GFP, calmodulin (a calcium binding messenger protein), and M13 (a sequence from myosin light chain kinase). When calcium binds to CaM, conformational changes in the protein cause a change in the intensity of the fluorescence of GFP.</p>
 +
      <p id="u1196-5">&nbsp;</p>
 +
      <p id="u1196-7">Functioning in much the same way as GCaMP, RCaMP is another GECI made from mRuby instead of GFP, and fluorescing red instead of green.</p>
 +
      <p id="u1196-8">&nbsp;</p>
 +
      <p id="u1196-9">&nbsp;</p>
 +
      <p id="u1196-10">&nbsp;</p>
 +
      <p id="u1196-11">&nbsp;</p>
 +
      <p id="u1196-12">&nbsp;</p>
 +
      <p id="u1196-13">&nbsp;</p>
 +
      <p id="u1196-14">&nbsp;</p>
 +
      <p id="u1196-15">&nbsp;</p>
 +
      <p id="u1196-16">&nbsp;</p>
 +
      <p id="u1196-17">&nbsp;</p>
 +
      <p id="u1196-18">&nbsp;</p>
 +
      <p id="u1196-19">&nbsp;</p>
 +
      <p id="u1196-20">&nbsp;</p>
 +
      <p id="u1196-21">&nbsp;</p>
 +
      <p id="u1196-22">&nbsp;</p>
 +
      <p id="u1196-23">&nbsp;</p>
 +
      <p id="u1196-24">&nbsp;</p>
 +
      <p id="u1196-25">&nbsp;</p>
 +
      <p id="u1196-26">&nbsp;</p>
 +
      <p id="u1196-28">The green fluorescence in this image is a result of the binding of calcium to GCAMP. This image was obtained from the lab of Dr. Margaret Saha at the College of William and Mary, from which we also acquired samples of GCaMP and RCaMP.</p>
 +
    </div>
 +
    <div class="clip_frame grpelem" id="u1197"><!-- image -->
 +
      <img class="block" id="u1197_img" src="https://static.igem.org/mediawiki/2014/4/45/WM_Wendy_gcamp.png" alt="" width="344" height="342"/>
     </div>
     </div>
     </div>
     </div>
Line 285: Line 297:
   if (document.location.protocol != 'https:') document.write('\x3Cscript src="http://musecdn2.businesscatalyst.com/scripts/4.0/jquery-1.8.3.min.js" type="text/javascript">\x3C/script>');
   if (document.location.protocol != 'https:') document.write('\x3Cscript src="http://musecdn2.businesscatalyst.com/scripts/4.0/jquery-1.8.3.min.js" type="text/javascript">\x3C/script>');
</script>
</script>
-
 
+
  <script type="text/javascript">
-
<script type="text/javascript">
+
   window.jQuery || document.write('\x3Cscript src="scripts/jquery-1.8.3.min.js" type="text/javascript">\x3C/script>');
-
   window.jQuery || document.write('\x3Cscript src="https://2014.igem.org/Team:William_and_Mary/wm_jquery-1.8.3.min.js?action=raw&amp;ctype=text/javascript" type="text/javascript">\x3C/script>');
+
</script>
</script>
-
   <script src="https://2014.igem.org/Team:William_and_Mary/wm_museutiles.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
   <script src="scripts/museutils.js?4050293121" type="text/javascript"></script>
-
   <script src="https://2014.igem.org/Team:William_and_Mary/wm_jquery.watch.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
   <script src="scripts/jquery.watch.js?3946357177" type="text/javascript"></script>
-
   <script src="https://2014.igem.org/Team:William_and_Mary/wm_jquery.musemenu.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
   <script src="scripts/jquery.musemenu.js?4027237583" type="text/javascript"></script>
-
  <script src="https://2014.igem.org/Team:William_and_Mary/wm_webpro.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
-
  <script src="https://2014.igem.org/Team:William_and_Mary/wm_musewpslideshow.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
-
  <script src="https://2014.igem.org/Team:William_and_Mary/wm_jquery.museoverlay.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
-
  <script src="https://2014.igem.org/Team:William_and_Mary/wm_touchswipe.js?action=raw&amp;ctype=text/javascript" type="text/javascript"></script>
+
   <!-- Other scripts -->
   <!-- Other scripts -->
-
 
+
   <script type="text/javascript">
-
    
+
-
 
+
-
<script type="text/javascript">
+
   $(document).ready(function() { try {
   $(document).ready(function() { try {
(function(){var a={},b=function(a){if(a.match(/^rgb/))return a=a.replace(/\s+/g,"").match(/([\d\,]+)/gi)[0].split(","),(parseInt(a[0])<<16)+(parseInt(a[1])<<8)+parseInt(a[2]);if(a.match(/^\#/))return parseInt(a.substr(1),16);return 0};(function(){$('link[type="text/css"]').each(function(){var b=($(this).attr("href")||"").match(/\/?css\/([\w\-]+\.css)\?(\d+)/);b&&b[1]&&b[2]&&(a[b[1]]=b[2])})})();(function(){$("body").append('<div class="version" style="display:none; width:1px; height:1px;"></div>');
(function(){var a={},b=function(a){if(a.match(/^rgb/))return a=a.replace(/\s+/g,"").match(/([\d\,]+)/gi)[0].split(","),(parseInt(a[0])<<16)+(parseInt(a[1])<<8)+parseInt(a[2]);if(a.match(/^\#/))return parseInt(a.substr(1),16);return 0};(function(){$('link[type="text/css"]').each(function(){var b=($(this).attr("href")||"").match(/\/?css\/([\w\-]+\.css)\?(\d+)/);b&&b[1]&&b[2]&&(a[b[1]]=b[2])})})();(function(){$("body").append('<div class="version" style="display:none; width:1px; height:1px;"></div>');
Line 310: Line 314:
Muse.Utils.resizeHeight()/* resize height */
Muse.Utils.resizeHeight()/* resize height */
Muse.Utils.initWidget('.MenuBar', function(elem) { return $(elem).museMenu(); });/* unifiedNavBar */
Muse.Utils.initWidget('.MenuBar', function(elem) { return $(elem).museMenu(); });/* unifiedNavBar */
-
Muse.Utils.initWidget('#pamphletu685', function(elem) { new WebPro.Widget.ContentSlideShow(elem, {contentLayout_runtime:'stack',event:'mouseover',deactivationEvent:'',autoPlay:false,displayInterval:3000,transitionStyle:'fading',transitionDuration:500,hideAllContentsFirst:false,shuffle:false,enableSwipe:true,resumeAutoplay:true,resumeAutoplayInterval:3000,playOnce:false}); });/* #pamphletu685 */
 
Muse.Utils.fullPage('#page');/* 100% height page */
Muse.Utils.fullPage('#page');/* 100% height page */
Muse.Utils.showWidgetsWhenReady();/* body */
Muse.Utils.showWidgetsWhenReady();/* body */
Line 316: Line 319:
} catch(e) { if (e && 'function' == typeof e.notify) e.notify(); else Muse.Assert.fail('Error calling selector function:' + e); }});
} catch(e) { if (e && 'function' == typeof e.notify) e.notify(); else Muse.Assert.fail('Error calling selector function:' + e); }});
</script>
</script>
-
 
-
 
   </body>
   </body>
</html>
</html>

Latest revision as of 20:30, 17 October 2014

Parts

The Calcium Kit

ChR1

Channelrhodopsin-1, or ChR1, is a light-gated ion channel. Responding to light of approximately 560 nm (yellow light), ChR1 is a non-specific cation channel, allowing the influx of ions such as calcium into cells. Unfortunately, ChR1 contained two internal PstI cutsites, which needed to be mutated out before it could be put into a biobrick backbone.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

See our part in the Registry at: parts.igem.org/Part:BBa_K1409000

This part is originally from the lab of Dr. Karl Deisseroth at Stanford University and was purchased from Addgene.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

ChR2

Channelrhodopsin-2 (ChR2), is another channelrhodopsin. The key differerence between ChR2 and ChR1 is that ChR2 absorbs blue light. ChR2 also contained an internal PstI cutsite that needed to be dealt with.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

This part is originally from the lab of Dr. Karel Svoboda at Janelia Farm and was purchased from Addgene.

CatCh

CatCh, or Calcium Relocating Channelrhodopsin, is a channelrhodopsin with an increased Ca2+ permeability. CatCh also had two internal PstI cutsites that were mutated out.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

See our part in the Registry at: parts.igem.org/Part:BBa_K1409001

This part is originally from the lab of Dr. Peter Hegemann at Humboldt-Universität in Berlin.

GCaMP/RCaMP

GCaMP, a Genetically Encoded Calcium Indicator (or GECI), is a protein created from the fusion of GFP, calmodulin (a calcium binding messenger protein), and M13 (a sequence from myosin light chain kinase). When calcium binds to CaM, conformational changes in the protein cause a change in the intensity of the fluorescence of GFP.

 

Functioning in much the same way as GCaMP, RCaMP is another GECI made from mRuby instead of GFP, and fluorescing red instead of green.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

The green fluorescence in this image is a result of the binding of calcium to GCAMP. This image was obtained from the lab of Dr. Margaret Saha at the College of William and Mary, from which we also acquired samples of GCaMP and RCaMP.

Retrieved from "http://2014.igem.org/Team:William_and_Mary/parts"