Team:UT-Dallas/Notebook/8-21

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<h1 class="firstHeading" align="center">Thursday, August 21, 2014</h1>
<h1 class="firstHeading" align="center">Thursday, August 21, 2014</h1>
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<p class="tab"> Today is a long day. </p>
<p class="tab"> Today is a long day. </p>
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<p class="tab"> <b>Second batch</b>: We inoculated some toxT gRNA. Today we are minipreping and test digesting it.</p>
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<p class="tab"> <b>Second batch (B2)</b>: We inoculated some toxT gRNA. Today we are minipreping it. (It already passed the test digest.</p>
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<p class="tab"> <b>Third batch (B3)</b>: Yesterday, we inoculated 2 reporter-Chlora colonies from each plates. Today we digest them, gel purify, ligate, and transform them onto Carb back bone, along with re-ligating and re-transforming ctxA that kept failing.</p>
+
<p class="tab"> <b>Third batch (B3)</b>: Yesterday, we inoculated 2 reporter-Chlora colonies from each plates. Today we digest them, gel purify, ligate, and transform them onto Carb back bone, along with re-ligating and re-transforming ctxA that kept failing. Gel test for some were not good so we inoculated a few more (from tcpR).</p>
<p class="tab"> <b>Forth batch (B4)</b>: We transformed B4 reporters on promoter-Chlora. The plates are good today. There's one colonies on the negative and the colonies on other plates appear with different sizes, so we are picking 2 colonies from each plates to inoculate.</p>
<p class="tab"> <b>Forth batch (B4)</b>: We transformed B4 reporters on promoter-Chlora. The plates are good today. There's one colonies on the negative and the colonies on other plates appear with different sizes, so we are picking 2 colonies from each plates to inoculate.</p>
<p>We remade some gRNA from the primers. Unfortunately, yesterday we didn't have the machine for overnight ligation. So we will ligate it tonight.</p>
<p>We remade some gRNA from the primers. Unfortunately, yesterday we didn't have the machine for overnight ligation. So we will ligate it tonight.</p>
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<p class="tab"> Tomorrow: we should have colonies of B4 reporters on the plates we are transforming today.</p>
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<br>
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<p class="tab"> <b>Tomorrow:</b> For B3, we need to re-do whatever we did today because of new inoculation of the old plates. Meaningly, miniprep, digest, gel purify, ligate, and transform newly inoculated tcpR. we should have colonies of B3 reporters on the plates we are transforming today. We should miniprep the B4 reporters we inoculated today. For gRNA of B4, ligation will be done and we will transform them tomorrow. Saturday, we will inoculate. Sunday, we will miniprep. Next week, on Monday, we should have everything ready for test digest and then finally send the last batch of sequencing!</p>
    
    
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<LI> Miniprep ctxA, ctxB.
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<LI> B3 reporter vectors on Chlora: Glycerol Stock + Miniprep + Digest + Gel extract and purify + ligate + transform onto carb
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<LI> Test digest and ran gel for ctxA, ctxB.
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<LI> Inoculate 2 more colonies from tcpR plates.
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<LI> Inoculate 2 colonies from each plate transformed yesterday (second batch, reporter vectors on Carb).
+
<LI> B4 reporter vectors on Chlora: Inoculate 2 colonies from each plate acfA, acfB, tcpT, tcpQ
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<LI> Prepared for sequencing: diluted to the correct volume and concentration.
+
<LI> ctxA: ligate + transform
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<LI> Purified RBS (digested overnight yesterday).
+
<LI> Miniprep toxT gRNA.
-
<LI> Transformed of overnight ligation yesterday (third batch, reporter vectors with promoters under Chlora).
+
<LI> Overnight ligation of primers gRNA under promoter: acfA, acfB, tcpF
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<LI> Inoculate more colonies from ctxA, ctxB plates.
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Today's Task
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       <img src="https://static.igem.org/mediawiki/2014/thumb/a/af/UTDallasAugust22i2.jpg/800px-UTDallasAugust22i2.jpg" height="320px">&nbsp;<img src="https://static.igem.org/mediawiki/2014/thumb/d/da/UTdallasAugust22i3.jpg/800px-UTdallasAugust22i3.jpg" height="320px">
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       <br> RBS-Carb Gel was good.  
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       <br> Terrible, terrible gel! We punctured the gel! The lane bled over each other. We had to make another gel to purify. <br><b><i>(In order, i5.47.1-2-3-4-X-5-6-7-8-9-10-11-12)</i></b></center>
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      <br> Updating the wiki notebook from the slowest computer in the building because currently we can't log into any other computer. Rishika is gel-ing the ctx-s.
 
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      <img src="<---------image from today----------->" style="border-width: 0px; display: none;" height="400px">
 
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Latest revision as of 14:28, 17 October 2014

Home Team Official Profile Project Parts Modeling Notebook Safety Attributions Human Practices

Thursday, August 21, 2014

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Today is a long day.

Second batch (B2): We inoculated some toxT gRNA. Today we are minipreping it. (It already passed the test digest.

Third batch (B3): Yesterday, we inoculated 2 reporter-Chlora colonies from each plates. Today we digest them, gel purify, ligate, and transform them onto Carb back bone, along with re-ligating and re-transforming ctxA that kept failing. Gel test for some were not good so we inoculated a few more (from tcpR).

Forth batch (B4): We transformed B4 reporters on promoter-Chlora. The plates are good today. There's one colonies on the negative and the colonies on other plates appear with different sizes, so we are picking 2 colonies from each plates to inoculate.

We remade some gRNA from the primers. Unfortunately, yesterday we didn't have the machine for overnight ligation. So we will ligate it tonight.


Tomorrow: For B3, we need to re-do whatever we did today because of new inoculation of the old plates. Meaningly, miniprep, digest, gel purify, ligate, and transform newly inoculated tcpR. we should have colonies of B3 reporters on the plates we are transforming today. We should miniprep the B4 reporters we inoculated today. For gRNA of B4, ligation will be done and we will transform them tomorrow. Saturday, we will inoculate. Sunday, we will miniprep. Next week, on Monday, we should have everything ready for test digest and then finally send the last batch of sequencing!
Today's tasks:
  • B3 reporter vectors on Chlora: Glycerol Stock + Miniprep + Digest + Gel extract and purify + ligate + transform onto carb
  • Inoculate 2 more colonies from tcpR plates.
  • B4 reporter vectors on Chlora: Inoculate 2 colonies from each plate acfA, acfB, tcpT, tcpQ
  • ctxA: ligate + transform
  • Miniprep toxT gRNA.
  • Overnight ligation of primers gRNA under promoter: acfA, acfB, tcpF
Today's Task

 
Terrible, terrible gel! We punctured the gel! The lane bled over each other. We had to make another gel to purify.
(In order, i5.47.1-2-3-4-X-5-6-7-8-9-10-11-12)

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