Team:Gothenburg

From 2014.igem.org

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<b>Woopwoop!</b>
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<p><a href="https://2014.igem.org/Team:Gothenburg/SampleTemplate"/a> Template </a></p>
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<p><a href="https://2014.igem.org/Team:Gothenburg/Calendar"/a> Calendar</a></p>
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<h1 >Welcome to the Wiki of Gothenburgs team for iGEM 2014! </h1>
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<p>This whole page is under very experimental construction.
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<br>In a not too distant future you will find here all the amazing things we've learned and achieved. </p>
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<br>
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<p style="color:#F0F0F0"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Gothenburg&action=edit"style="color:#FFFFFF"> Click here to edit the home page!</a> </p>
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<h3>Introduction</h3>
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<h2>Introduction</h2>
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<p>Our project intends to create a generation counter in Saccharomyces cerevisiae. The yeast cell would express fluorescent proteins of different colors according to the number of daughter cells spawn. Nowadays, the replicative age of a yeast cell is determined by counting the budding scars with the help of a microscope. This process is time-consuming and not automated. Once our idea is implemented, it would be possible to use a flow cytometric device to sort the cells according to their color and, consequently, generation number. To achieve that, we are building genetic circuits with a logical AND gate ensuring generation specific expression of different fluorescent proteins.
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Our project intends to create a generation counter in Saccharomyces cerevisiae.  
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The yeast cell would express fluorescent proteins of different colors according to
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the number of daughter cells spawn. Nowadays, the replicative age of a yeast  
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cell is determined by counting the budding scars with the help of a microscope.
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This process is time-consuming and not automated. Once our idea is implemented,
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it would be possible to use a flow cytometric device to sort the cells according  
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to their color and, consequently, generation number. To achieve that, we are  
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building genetic circuits with a logical AND gate ensuring generation specific  
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expression of different fluorescent proteins.
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<h3>Project Description</h3>
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Nowadays the determination of replicative age of yeast cells is done by
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counting the budding scars of each cell in a microscope, a process time consuming
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and not effective. Our team goal with the iGEM project is to construct a yeast
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generation counter. The idea is that each time the cell divides a different
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florescent protein [1, 2] is produced. Therefore by examining the cell under a
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microscope or in a flow cytometer one can determine how many times the cell has
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divided. This would be achieved by constructing a logical AND gate in the cell [3]
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where the input signals consist of a cyclin activated dCas9-VP64 and a guide RNA
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(gRNA) [4] signal from the previous cell cycle. The output response consist of a
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different fluorescent protein and a new gRNA molecule, see figure 1.
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<p>Figure 1. Schematic representation of the logical AND gate with the input
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and output signals.
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dCas9-VP64 is an engineered turntable transcription factor only active when dimerized
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with an interchangeable gRNA molecule. The gRNA also determines the specificity of
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the transcription factor which enables the dCas9-VP64 to activate different genes
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depending on the sequence of the gRNA molecule and the promoter. gRNA consists of two
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parts, a scaffold and a 20 bp Specificity Determinant Sequence (SDS) on the 5' end.
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The scaffold constitutes the majority of the gRNA molecule and gives it its structure
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whereas the SDS binds to the target site in the gene promoter.  Cyclins are proteins
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that are involved in the progression of the cell cycle, therefore activated at specific
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times [5]. To mimic the specific production pattern of cyclins the dCas9-VP64 gene is
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placed under the control of a yeast cyclin promoter. Therefore the Cas9 will be
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produced in the G1 phase. When the Cas9 and gRNA dimerize and the transcription factor
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is activated, it in turn activates the transcription of a new fluorescent protein and
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a new gRNA molecule to act as a memory for the next cycle. Once this age counter is
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implemented, it would be possible to sort cells according to their replicative age
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automatically with a flow cytometer device.
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</p>
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<h4>References</h4>
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<ol id="references">
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<li>Hackett, E.A., et al., A family of destabilized cyan fluorescent proteins as
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transcriptional reporters in S. cerevisiae. Yeast, 2006. 23(5): p. 333-349.</li>
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<li>Andersen, J.B., et al., New unstable variants of green fluorescent protein for
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studies of transient gene expression in bacteria. Applied and environmental microbiology,
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1998. 64(6): p. 2240-2246.</li>
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<li>Moon, T.S., et al., Genetic programs constructed from layered logic gates in single
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cells. Nature, 2012. 491(7423): p. 249-253.</li>
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<li>Farzadfard, F., S.D. Perli, and T.K. Lu, Tunable and multifunctional eukaryotic
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transcription factors based on CRISPR/Cas. ACS synthetic biology, 2013. 2(10): p.
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604-613.</li>
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<li>Nasmyth, K., At the heart of the budding yeast cell cycle. Trends in Genetics,
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1996. 12(10): p. 405-412</li>
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<p> Please be sure to keep these links, your audience will want to find your: </p>
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              <div id="f-poweredbyico"><a href="http://www.mediawiki.org/"><img src="/wiki/skins/common/images/poweredby_mediawiki_88x31.png" height="31" width="88" alt="Powered by MediaWiki" /></a></div>       <div id="f-copyrightico"><a href="http://creativecommons.org/licenses/by/3.0/"><img src="http://i.creativecommons.org/l/by/3.0/88x31.png" alt="Attribution 3.0 Unported" width="88" height="31" /></a></div>     <ul id="f-list">
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<li><a href="https://2014.igem.org/Team:Gothenburg">Home</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Team">Team</a></li>
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<li><a href="https://igem.org/Team.cgi?year=2013&team_name=Gothenburg">Official Team Profile</a> </li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Project">Project</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Parts">Parts</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Modeling">Modeling</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Notebook">Notebook</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Safety">Safety</a></li>
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<li><a href="https://2014.igem.org/Team:Gothenburg/Attributions">Attributions</a></li>
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<p>There are a few wiki requirements teams must follow:</p>
 
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<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
 
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<li>All pages must be created under the team’s name space.</li>
 
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<li>As part of your documentation, keep the links from the menu to the left. </li>
 
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<li>Do not use flash in wiki code. </li>
 
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<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
 
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<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
 
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                  title="Upload files [u]" accesskey="u">Upload file</a>
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                  title="List of all special pages [q]" accesskey="q">Special pages</a>
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                <li><a href='/Special:Preferences'>My preferences</a></li>
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        <li id="disclaimer"><a href="/2014.igem.org:General_disclaimer" title="2014.igem.org:General disclaimer">Disclaimers</a></li>
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<p>We are currently working on providing teams with some easy to use design templates.
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<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
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<li><a href="https://2013.igem.org/Team:SDU-Denmark/">2013 SDU Denmark</a></li>
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<li><a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a></li>
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<li><a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG</a></li>
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<li><a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades</a></li>
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<li><a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
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<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
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<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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<li>Be clear about what you are doing and what you plan to do.</li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
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<li>Have lots of fun! </li>
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Latest revision as of 12:15, 17 October 2014

TemplateUp

Introduction

Our project intends to create a generation counter in Saccharomyces cerevisiae. The yeast cell would express fluorescent proteins of different colors according to the number of daughter cells spawn. Nowadays, the replicative age of a yeast cell is determined by counting the budding scars with the help of a microscope. This process is time-consuming and not automated. Once our idea is implemented, it would be possible to use a flow cytometric device to sort the cells according to their color and, consequently, generation number. To achieve that, we are building genetic circuits with a logical AND gate ensuring generation specific expression of different fluorescent proteins.


Retrieved from "http://2014.igem.org/Team:Gothenburg"