Team:NEFU China/Parts

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<p class="second-logo"><img src="https://static.igem.org/mediawiki/2014/6/65/NEFU_China_logo2.png"></p>
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<h1 >WELCOME TO iGEM 2014! </h1>
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          <ul class="list-unstyled left-nav">
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<p>Your team has been approved and you are ready to start the iGEM season!
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            <li><a href="#dg">General Description</a>
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<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
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                <ul class="list-unstyled">
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<br>
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                  <li><a href="#fd">For Detecting</a></li>
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<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:NEFU_China/Parts&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
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                  <li><a href="#fr">For Recycling</a></li>
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</td>
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                  <li><a href="#ff">For Flocculating</a></li>
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                </ul>
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            </li>
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            <li><a href="#cs">Construction and Standardize</a></li>
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  <li><a href="https://2014.igem.org/Team:NEFU_China">Home</a></li>
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  <li class="dropdown active"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Project <span class="caret"></span></a>
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<a href="https://2014.igem.org/Team:NEFU_China"style="color:#000000">Home </a> </td>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Project#overview">Overview</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Project#background">Background</a></li>
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<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Project#design">Design</a></li>
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<a href="https://2014.igem.org/Team:NEFU_China/Team"style="color:#000000"> Team </a> </td>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Project#fa">Future application</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Parts">Parts</a></li>
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    </ul>
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<a href="https://igem.org/Team.cgi?year=2014&team_name=NEFU_China"style="color:#000000"> Official Team Profile </a></td>
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  </li>
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  <li class="dropdown"> <a href="#" class="dropdown-toggle" data-toggle="dropdown">Result <span class="caret"></span></a>
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<a href="https://2014.igem.org/Team:NEFU_China/Project"style="color:#000000"> Project</a></td>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Foundation">Foundation</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Detecting">Delecting</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Modeling">Modeling</a></li>
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<a href="https://2014.igem.org/Team:NEFU_China/Parts"style="color:#000000"> Parts</a></td>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Recycling">Recycling</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Futureapplication">Future Application</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Achievements">Achievements</a></li>
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<a href="https://2014.igem.org/Team:NEFU_China/Modeling"style="color:#000000"> Modeling</a></td>
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    </ul>
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  <li class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown">Journal <span class="caret"></span></a>
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<a href="https://2014.igem.org/Team:NEFU_China/Notebook"style="color:#000000"> Notebook</a></td>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Monthly">Monthly</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Labnote">Labnote</a></li>
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<a href="https://2014.igem.org/Team:NEFU_China/Safety"style=" color:#000000"> Safety </a></td>
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    </ul>
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  <li><a href="https://2014.igem.org/Team:NEFU_China/Biosafety">Biosafety</a></li>
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<a href="https://2014.igem.org/Team:NEFU_China/Attributions"style="color:#000000"> Attributions </a></td>
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  <li class="dropdown"><a href="#" class="dropdown-toggle" data-toggle="dropdown">Human Practice <span class="caret"></span></a>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Socialactivities">Social Activities</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Survey">Survey</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Team#instructor">Instructors</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Team#student">Students</a></li>
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      <li><a href="https://2014.igem.org/Team:NEFU_China/Team#advisor">Acknowledgement</a></li>
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        <div class="content" style="padding:10px;">
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          <h2 class="subtitle"><a name="gd">General Description</a></h2 class="subtitle">
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          <table class="table table-bordered table-hover">
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<!--Parts Submitted to the Registry  -->
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<thead>
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<tr><td > <h3> Parts Submitted to the Registry </h3></td>
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  <tr>
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<td ></td >
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    <th colspan="3"><p>Abbreviations</p></th>
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<td > <h3>What information do I need to start putting my parts on the Registry? </h3></td>
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  </tr>
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<tr>
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  <tr>
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<td width="45%"  valign="top">  
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    <td><p>B</p></td>
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<p>
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    <td><p>smtB</p></td>
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An important aspect of the iGEM competition is the use and creation of standard  biological parts. Each team will make new parts during iGEM and will submit them to the <a href="http://partsregistry.org"> Registry of Standard Biological Parts</a>. The iGEM software provides an easy way to present the parts your team has created. The "groupparts" tag will generate a table with all of the parts that your team adds to your team sandbox. 
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    <td><p>Trans-acting regulator</p></td>
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  </tr>
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<p>
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  <tr>
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<strong>Note that if you want to document a part you need to document it on the <a href="http://partsregistry.org Registry"> Registry</a>, not on your team wiki.</strong> Future teams and other users and are much more likely to find parts on the Registry than on your team wiki.
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    <td><p>OP</p></td>
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</p>
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    <td><p>smtO-P</p></td>
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    <td><p>Smt operator/promoter region, a   bi-directional promoter </p></td>
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<p>
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  </tr>
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Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without a need to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.
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  <tr>
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</p>
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    <td><p>A</p></td>
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    <td><p>smtA</p></td>
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    <td><p>Encoding MT-like protein that can   sequester metal ions</p></td>
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  </tr>
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<h3>When should you put parts into the Registry?</h3>
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  <tr>
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    <td><p>C</p></td>
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<p>
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    <td><p>amilCP</p></td>
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As soon as possible! We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better recall you will have of all details surrounding your parts. Remember you don't need to send us the DNA to create an entry for a part on the Registry. However, you must send us the sample/DNA before the Jamboree. Only parts for which you have sent us samples/DNA are eligible for awards and medal requirements.
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    <td><p>Encoding a chromoprotein that has a    blue/purple color visible to the naked eye. A registered part from iGEM11_Uppsala-Sweden</p></td>
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</p>
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  </tr>
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</td>
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  <tr>
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    <td><p>R</p></td>
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<td > </td>
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    <td><p>RFP</p></td>
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<td width="45%" valign="top">
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    <td><p>Red Fluorescent Protein. <br>
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      A registered part from iGEM11_Uppsala-Sweden</p></td>
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<p>
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  </tr>
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The information needed to initially create a part on the Registry is:
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  <tr>
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</p>
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    <td><p>Flo</p></td>
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<ol>
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    <td><p>Flocculation gene</p></td>
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    <td><p>It can improve the flocculent activity of    our host cells (<em>E. coli</em> <em>DH5α</em>)</p></td>
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<li>Part Name</li>
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  </tr>
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<li>Part type</li>
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  <tr>
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<li>Creator</li>
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    <td colspan="2"><p>CP25</p></td>
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<li>Sequence</li>
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    <td><p>A constitutive strong promoter</p></td>
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<li>Short Description (60 characters on what the DNA does)</li>
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  </tr>
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<li>Long Description (Longer description of what the DNA does)</li>
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  <tr>
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<li>Design considerations</li>
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    <td colspan="2"><p>CDS7</p></td>
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</ol>
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    <td><p>Encoding a short peptide that can bind to   CdS and<br>
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      induce the formation of CdS nanocrystals</p></td>
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<p>
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  </tr>
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We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. Check out part <a href="http://parts.igem.org/Part:BBa_K404003">BBa_K404003</a> for an excellent example of a highly characterized part.
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  <tr>
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</p>
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    <td colspan="2"><p>BCP</p></td>
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    <td><p>According to priority: smtB, smtO-P(omit    here), amilCP</p></td>
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<p>
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  </tr>
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You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry"> Add a Part to the Registry</a> link.
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  <tr>
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</p>
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    <td colspan="2"><p>BRP</p></td>
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</td>
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    <td><p>According to priority: smtB, smtO-P(omit    here), RFP</p></td>
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</tr>
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  </tr>
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  <tr>
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    <td colspan="2"><p>OPA</p></td>
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<tr> <td colspan="3"  height="15px"> </td></tr>
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    <td><p>According to priority: smtO-P, smtA</p></td>
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  </tr>
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<tr><td colspan="3" > <h3> Parts Table</h3></td></tr>
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  <tr>
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    <td colspan="2"><p>FCDS7</p></td>
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    <td><p>According to priority: flocculation gene,    CP25(omit here), CDS7</p></td>
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<tr><td width="45%" colspan="3"  valign="top">
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  </tr>
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Any parts your team has created will appear in this table below:</td></tr>
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</table>
</table>
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          <h2 class="subtitle"><a name="fd">For Detecting</a></h2 class="subtitle">
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          <h3><a href="http://parts.igem.org/Part:BBa_K1509000">BBa_K1509000</a></h3>
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          <p>This is a new coding region part. It encodes smtB protein that functions as a trans-acting regulator and binds at two inverted repeats in smt operator/promoter sites, a bi-directional promoter. In the original intact smt locus, this interaction leads to the repression of the gene smtA, orientated in the opposite direction of the gene smtB. Previous cases selected smtA whose product functions by encoding MT-like protein that can sequester metal ions to deplete heavy metal ions from environment, while we take advantage of the interaction between SmtB protein and smt operator/promoter, the bi-directional promoter. This part is essential for our designed function of detection. With <a href="http://parts.igem.org/Part:BBa_K1509001">BBa_K1509001</a>(smt operator/promoter), it’s the core member of the cadmium sensor.</p>
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          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/a/aa/NEFU_China_BBa_K1509000.png" width=40% class="img-thumbnail"></p>
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          <h3><a href="http://parts.igem.org/Part:BBa_K1509001">BBa_K1509001</a></h3>
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          <p>This is a bi-directional promoter, a new non-coding region part. It contains two inverted repeats that are the binding sites of SmtB protein. And the activity of one direction of this promoter can be repressed after the interaction with SmtB protein. With <a href="http://parts.igem.org/Part:BBa_K1509000">BBa_K1509000</a>(the gene smtB), it’s the core member of the cadmium sensor.</p>
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          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/0/02/NEFU_China_BBa_K1509001.png" width=40% class="img-thumbnail"></p>
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          <h2 class="subtitle"><a name="fr">For Recycling</a></h2 class="subtitle">
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          <h3><a href="http://parts.igem.org/Part:BBa_K1509003">BBa_K1509003</a></h3>
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          <p>This is a constitutive strong promoter, a new non-coding region part. The promoter was designated as CP25. CP25 is a stronge promoter in Lactococcus lactis.(Jensen and Hammer, 1998) In this article, they measured the activities of the CP promoters in <em>E. coli</em> and assayed the expression of a reporter gene(lacLM) to rank the activities of those CP promoters. The result suggests CP25 is the strongest promoter. We picked it and insert it upstream of the gene CDS7(<a href="http://parts.igem.org/Part:BBa_K643000">BBa_K643000</a>), a part registered by Columbia-Cooper in 2011 iGEM competition, to make sure the gene CDS7 can be transcript constantly.</p>
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          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/8/8f/NEFU_China_BBa_K1509003.png" width=40% class="img-thumbnail"></p>
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          <h2 class="subtitle"><a name="ff">For Flocculating</a></h2 class="subtitle">
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          <h3><a href="http://parts.igem.org/Part:BBa_K1509002">BBa_K1509002</a></h3>
 +
          <p>This is a new coding region part. It is responsible for the flocculent ability of Bacillus sp. F2 and has been converted to <em>E. coli</em> JM109. It has been proved that strain of <em>E. coli</em> positive clone FC2 could express flocculent activity, with the flocculent efficiency of 90%, thus can be a good choice in environmental applications.(Guangyu Chang et al., 2007) The 1071bp gene consists of 29% T, 18% C, 25% G and 29% A. Considering the subsequent treatment of our reconstructed bacteria, we use this gene to enhance the flocculent activity of our bacteria. This is to make it easier to collect nanocrystals formed by our bacteria and also a second thought of the problem of secondary pollution. It’s very promising in future application.</p>
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          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/1/17/NEFU_China_BBa_K1509002.png" width=40% class="img-thumbnail"></p>
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          <h2 class="subtitle"><a name="cs">Construction and Standardize</a></h2 class="subtitle">
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          <table align="center" cellspacing="0" cellpadding="0" border="1">
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            <tbody>
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              <tr>
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                <td width="577" colspan="3" valign="top"><p> <strong>Abbreviations</strong> </p></td>
 +
              </tr>
 +
              <tr>
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                <td width="49" valign="top"><p> B </p></td>
 +
                <td width="115" valign="top"><p> smtB </p></td>
 +
                <td width="413" valign="top"><p> Trans-acting regulator </p></td>
 +
              </tr>
 +
              <tr>
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                <td width="49" valign="top"><p> OP </p></td>
 +
                <td width="115" valign="top"><p> smtO-P </p></td>
 +
                <td width="413" valign="top"><p> Smt operator/promoter region, a &nbsp; bi-directional promoter </p></td>
 +
              </tr>
 +
              <tr>
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                <td width="49" valign="top"><p> A </p></td>
 +
                <td width="115" valign="top"><p> smtA </p></td>
 +
                <td width="413" valign="top"><p> Encoding MT-like protein that can &nbsp; sequester metal ions </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="49" valign="top"><p> C </p></td>
 +
                <td width="115" valign="top"><p> amilCP </p></td>
 +
                <td width="413" valign="top"><p> Encoding a chromoprotein that has a &nbsp; blue/purple color visible to the naked eye. A registered part from iGEM11_Uppsala-Sweden </p></td>
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              </tr>
 +
              <tr>
 +
                <td width="49" valign="top"><p> R </p></td>
 +
                <td width="115" valign="top"><p> RFP </p></td>
 +
                <td width="413" valign="top"><p> Red Fluorescent Protein. </p>
 +
                  <p> A registered part from iGEM11_Uppsala-Sweden </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="49" valign="top"><p> Flo </p></td>
 +
                <td width="115" valign="top"><p> Flocculation gene </p></td>
 +
                <td width="413" valign="top"><p> It can improve the flocculent activity of &nbsp; our host cells (<em>E. coli</em> <em>DH5α</em>) </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> CP25 </p></td>
 +
                <td width="413" valign="top"><p> A constitutive strong promoter </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> CDS7 </p></td>
 +
                <td width="413" valign="top"><p> Encoding a short peptide that can bind to &nbsp; CdS and </p>
 +
                  <p> &nbsp;induce the formation of CdS nanocrystals </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> BCP </p></td>
 +
                <td width="413" valign="top"><p> According to priority: smtB, smtO-P(omit &nbsp; here), amilCP </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> BRP </p></td>
 +
                <td width="413" valign="top"><p> According to priority: smtB, smtO-P(omit &nbsp; here), RFP </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> OPA </p></td>
 +
                <td width="413" valign="top"><p> According to priority: smtO-P, smtA </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="164" colspan="2" valign="top"><p> FCDS7 </p></td>
 +
                <td width="413" valign="top"><p> According to priority: flocculation gene, &nbsp; CP25(omit here), CDS7 </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>Miniprep (default pSB1C3 with RFP<a href="http://parts.igem.org/Part:BBa_E1010">BBa_E1010</a>, pEASY-T5 cloning vector with BCP, OPA and FC) with TIANprep Mini Plasmid Kit.<a>see protocol</a> Part preparation by PCR (smtB, smtO-P and CP25) </p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="47" height="14" rowspan="6"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">primers</span></strong> </p></td>
 +
                <td width="47" height="14" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">smtB</span></strong> </p></td>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">F</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ CG</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">GAATTC</span><span style="font-size: 10px;font-family: Arial, sans-serif">CTAGCGACACTCTTGTAAGTGATCG 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">R</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5&#39; GG</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">ACTAGT</span><span style="font-size: 10px;font-family: Arial, sans-serif">ATGACAAAACCAGTGCTGCAG 3&#39; </span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="47" height="14" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">smtO-P</span></strong> </p></td>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">F</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ CG</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">GAATTC</span><span style="font-size: 10px;font-family: Arial, sans-serif">GAGCCAATCACGGTTTGTCCACCCA 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">R</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ AA</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">CTGCAG</span><span style="font-size: 10px;font-family: Arial, sans-serif">GACAGCAACTCCTTTGAATATCTGA 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="47" height="14" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">CP25</span></strong> </p></td>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">F</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ CG</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">GAATTC</span><span style="font-size: 10px;font-family: Arial, sans-serif">CTTTGGCAGTTTATTCTTGACA 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">R</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ AA</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">CTGCAG</span><span style="font-size: 10px;font-family: Arial, sans-serif">AACAGTACTATGTGATTATACCAGC 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="188" height="22" colspan="4" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">PCR system (50ul)</span></strong> </p></td>
 +
                <td width="292" height="22" colspan="3"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">parameters</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="82" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">procedure</span></strong> </p></td>
 +
                <td width="105" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="105" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">premix taq(TaKaRa)</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">25ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PreDenature</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer F</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Denature</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer R</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Annealing</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">55 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">plasmids</span> </p>
 +
                  <p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">diluted 100</span>× </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">1ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Extension</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">dNTPs</span> </p></td>
 +
                <td width="90" rowspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">included in premix</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final Elongation</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">buffer</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final Hold</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: 宋体">∞</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">H<sub>2</sub>O</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">20ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Cycle</span> </p></td>
 +
                <td width="210" colspan="2" valign="top"><p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 cycles</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>Part preparation by PCR (F, short for Flocculation)</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="94" height="14" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">primers</span></strong> </p></td>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">F</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5’ GC</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">TCTAGA</span><span style="font-size: 10px;font-family: Arial, sans-serif">ATGAGTCTACTTGCTGTTTTGTTTT 3’</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="94" height="14" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">R</span></strong> </p></td>
 +
                <td width="292" height="14" colspan="3"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5&#39; AA</span><span style="font-size:10px;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:red">CTGCAG</span><span style="font-size: 10px;font-family: Arial, sans-serif">TTACGAATTCGAGCTCGGTAC 3&#39; </span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="188" height="22" colspan="3" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">PCR system (50ul)</span></strong> </p></td>
 +
                <td width="292" height="22" colspan="3"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">parameters</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="82" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">procedure</span></strong> </p></td>
 +
                <td width="105" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="105" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">premix taq(TaKaRa)</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">25ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PreDenature</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer F</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Denature</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer R</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Annealing</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">55 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">plasmids</span> </p>
 +
                  <p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">diluted 100</span>× </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">1ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Extension</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">1.5 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">dNTPs</span> </p></td>
 +
                <td width="90" rowspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">included in premix</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final Elongation</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">buffer</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final Hold</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="105"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: 宋体">∞</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="97" colspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">H<sub>2</sub>O</span> </p></td>
 +
                <td width="90"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">20ul</span> </p></td>
 +
                <td width="82"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Cycle</span> </p></td>
 +
                <td width="210" colspan="2" valign="top"><p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 cycles</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/0/0d/NEFU_China_1236811DL2000.png" class="img-thumbnail"></p>
 +
          <p>P1 parts’ PCR product 1,2. smtO-P; 3-6. smtB; 8-11. F; Marker (DL2000) </p>
 +
          <p style="text-align:center;"><img src="https://static.igem.org/mediawiki/2014/d/dd/NEFU_China_cp25DL2000.png" class="img-thumbnail"></p>
 +
          <p>P2 PCR product of CP25; Marker (DL2000)</p>
 +
          <p>Double digestion (NEB)</p>
 +
          <p>SmtB</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="123" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">substrate</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">EcoR I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Spe I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Cutsmart </span></strong> </p>
 +
                  <p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Buffer</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">H<sub>2</sub>O</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">total</span></strong> </p></td>
 +
                <td width="68"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="56"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">BBa_E1010</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PCR product</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>SmtO-P, CP25</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="123" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">substrate</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">EcoR I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Pst I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">1</span></strong><strong><span style="font-size: 10px;font-family: 宋体">×</span></strong><strong><span style="font-size: 10px;font-family: Arial, sans-serif">H</span></strong><strong> </strong> </p>
 +
                  <p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Buffer</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">H<sub>2</sub>O</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">total</span></strong> </p></td>
 +
                <td width="68"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="56"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">BBa_E1010</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PCR product</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>F</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="123" colspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">substrate</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Xba I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Pst I</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">1</span></strong><strong><span style="font-size: 10px;font-family: 宋体">×</span></strong><strong><span style="font-size: 10px;font-family: Arial, sans-serif">M </span></strong> </p>
 +
                  <p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Buffer</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">H<sub>2</sub>O</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">total</span></strong> </p></td>
 +
                <td width="68"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="56"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">BBa_E1010</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="75"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PCR product</span> </p></td>
 +
                <td width="49"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">54ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">100ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>Ligation (TaKaRa DNA Ligation Kit Ver.2.1see manual)</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="64"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Solution I</span></strong> </p></td>
 +
                <td width="128"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">-plasmid- &nbsp; &amp; </span></strong><strong><span style="font-size: 10px;font-family: Arial, sans-serif">-Part-</span></strong> </p></td>
 +
                <td width="64"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">total</span></strong> </p></td>
 +
                <td width="64"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="64"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="64"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5ul</span> </p></td>
 +
                <td width="128"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5ul in total (see note)</span> </p></td>
 +
                <td width="64"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="64"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="64"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="384" colspan="5"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Note</span></strong><span style="font-size: 10px;font-family: Arial, sans-serif">:-plasmid-:-BCP-(mole number)=1:2~1:8</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>Transformationsee protocol</p>
 +
          <p>Colony PCR</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="205" height="22" colspan="2" rowspan="2"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">PCR system (20ul)</span></strong> </p></td>
 +
                <td width="263" height="22" colspan="3"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">parameters</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="92" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">procedure</span></strong> </p></td>
 +
                <td width="85" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="85" height="22"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">premix taq(TaKaRa)</span> </p></td>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10ul</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">PreDenature</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">5 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer F</span> </p></td>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">0.8ul</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Denature</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">94 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">primer R</span> </p></td>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">0.8ul</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Annealing</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">55 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102" rowspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">template: &nbsp; pick a single colony and dip in H<sub>2</sub>O</span> </p></td>
 +
                <td width="102" rowspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">8.4ul</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Extension</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 sec/1.5 &nbsp; min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final &nbsp; Elongation</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">72 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">10 min</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">dNTPs</span> </p></td>
 +
                <td width="102" rowspan="2"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">included &nbsp; in premix</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Final Hold</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 </span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="85"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: 宋体">∞</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="102"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">buffer</span> </p></td>
 +
                <td width="92"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">Cycle</span> </p></td>
 +
                <td width="171" colspan="2" valign="top"><p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">30 cycles</span> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="467" colspan="5"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">Note</span></strong><span style="font-size: 10px;font-family: Arial, sans-serif">:1. &nbsp;The &nbsp; template was heat denatured at 100</span><span style="font-size: 10px;font-family: 宋体">℃</span><span style="font-size: 10px;font-family: Arial, sans-serif"> in metal bath, then freeze on ice for 2 &nbsp; min </span> </p>
 +
                  <p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">before &nbsp; running through parameters on the right.</span> </p>
 +
                  <p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2. </span><span style="font-size: 10px;font-family: Arial, sans-serif">Extension time: 30 sec for smtB, smtO-P and CP25; 1.5 &nbsp; min for F</span> </p>
 +
                  <p style="text-align:center;line-height:15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">3. </span><span style="font-size: 10px;font-family: Arial, sans-serif">Use corresponding primers</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>Miniprep (pSB1C3 with maybe smtB or smtO-P or F or CP25) with TIANprep Mini Plasmid Kit.see protocol</p>
 +
          <p>Double digestion (NEB) for detection (refer to the double digestion tables above for details)</p>
 +
          <table align="center" cellspacing="0" cellpadding="0" border="1">
 +
            <tbody>
 +
              <tr>
 +
                <td width="123"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">plasmids with H<sub>2</sub>O</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">enzyme1</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">enzyme2</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">buffer</span></strong> </p></td>
 +
                <td width="63"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">total</span></strong> </p></td>
 +
                <td width="68"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">temperature</span></strong> </p></td>
 +
                <td width="56"><p style="text-align:center;line-height:15px"> <strong><span style="font-size: 10px;font-family: Arial, sans-serif">time</span></strong> </p></td>
 +
              </tr>
 +
              <tr>
 +
                <td width="123"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16.8ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">0.6ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">0.6ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">2ul</span> </p></td>
 +
                <td width="63"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">20ul</span> </p></td>
 +
                <td width="68"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">37</span><span style="font-size: 10px;font-family: 宋体">℃</span> </p></td>
 +
                <td width="56"><p style="line-height: 15px"> <span style="font-size: 10px;font-family: Arial, sans-serif">16 h</span> </p></td>
 +
              </tr>
 +
            </tbody>
 +
          </table>
 +
          <p>The sequencing results are consistent with our designation.</p>
 +
        </div>
 +
      </div>
 +
    </div>
 +
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<groupparts>iGEM013 NEFU_China</groupparts>
 

Latest revision as of 12:01, 17 October 2014

General Description

Abbreviations

B

smtB

Trans-acting regulator

OP

smtO-P

Smt operator/promoter region, a bi-directional promoter

A

smtA

Encoding MT-like protein that can sequester metal ions

C

amilCP

Encoding a chromoprotein that has a blue/purple color visible to the naked eye. A registered part from iGEM11_Uppsala-Sweden

R

RFP

Red Fluorescent Protein.
A registered part from iGEM11_Uppsala-Sweden

Flo

Flocculation gene

It can improve the flocculent activity of our host cells (E. coli DH5α)

CP25

A constitutive strong promoter

CDS7

Encoding a short peptide that can bind to CdS and
induce the formation of CdS nanocrystals

BCP

According to priority: smtB, smtO-P(omit here), amilCP

BRP

According to priority: smtB, smtO-P(omit here), RFP

OPA

According to priority: smtO-P, smtA

FCDS7

According to priority: flocculation gene, CP25(omit here), CDS7

For Detecting

BBa_K1509000

This is a new coding region part. It encodes smtB protein that functions as a trans-acting regulator and binds at two inverted repeats in smt operator/promoter sites, a bi-directional promoter. In the original intact smt locus, this interaction leads to the repression of the gene smtA, orientated in the opposite direction of the gene smtB. Previous cases selected smtA whose product functions by encoding MT-like protein that can sequester metal ions to deplete heavy metal ions from environment, while we take advantage of the interaction between SmtB protein and smt operator/promoter, the bi-directional promoter. This part is essential for our designed function of detection. With BBa_K1509001(smt operator/promoter), it’s the core member of the cadmium sensor.

BBa_K1509001

This is a bi-directional promoter, a new non-coding region part. It contains two inverted repeats that are the binding sites of SmtB protein. And the activity of one direction of this promoter can be repressed after the interaction with SmtB protein. With BBa_K1509000(the gene smtB), it’s the core member of the cadmium sensor.

For Recycling

BBa_K1509003

This is a constitutive strong promoter, a new non-coding region part. The promoter was designated as CP25. CP25 is a stronge promoter in Lactococcus lactis.(Jensen and Hammer, 1998) In this article, they measured the activities of the CP promoters in E. coli and assayed the expression of a reporter gene(lacLM) to rank the activities of those CP promoters. The result suggests CP25 is the strongest promoter. We picked it and insert it upstream of the gene CDS7(BBa_K643000), a part registered by Columbia-Cooper in 2011 iGEM competition, to make sure the gene CDS7 can be transcript constantly.

For Flocculating

BBa_K1509002

This is a new coding region part. It is responsible for the flocculent ability of Bacillus sp. F2 and has been converted to E. coli JM109. It has been proved that strain of E. coli positive clone FC2 could express flocculent activity, with the flocculent efficiency of 90%, thus can be a good choice in environmental applications.(Guangyu Chang et al., 2007) The 1071bp gene consists of 29% T, 18% C, 25% G and 29% A. Considering the subsequent treatment of our reconstructed bacteria, we use this gene to enhance the flocculent activity of our bacteria. This is to make it easier to collect nanocrystals formed by our bacteria and also a second thought of the problem of secondary pollution. It’s very promising in future application.

Construction and Standardize

Abbreviations

B

smtB

Trans-acting regulator

OP

smtO-P

Smt operator/promoter region, a   bi-directional promoter

A

smtA

Encoding MT-like protein that can   sequester metal ions

C

amilCP

Encoding a chromoprotein that has a   blue/purple color visible to the naked eye. A registered part from iGEM11_Uppsala-Sweden

R

RFP

Red Fluorescent Protein.

A registered part from iGEM11_Uppsala-Sweden

Flo

Flocculation gene

It can improve the flocculent activity of   our host cells (E. coli DH5α)

CP25

A constitutive strong promoter

CDS7

Encoding a short peptide that can bind to   CdS and

 induce the formation of CdS nanocrystals

BCP

According to priority: smtB, smtO-P(omit   here), amilCP

BRP

According to priority: smtB, smtO-P(omit   here), RFP

OPA

According to priority: smtO-P, smtA

FCDS7

According to priority: flocculation gene,   CP25(omit here), CDS7

Miniprep (default pSB1C3 with RFPBBa_E1010, pEASY-T5 cloning vector with BCP, OPA and FC) with TIANprep Mini Plasmid Kit.see protocol Part preparation by PCR (smtB, smtO-P and CP25)

primers

smtB

F

5’ CGGAATTCCTAGCGACACTCTTGTAAGTGATCG 3’

R

5' GGACTAGTATGACAAAACCAGTGCTGCAG 3'

smtO-P

F

5’ CGGAATTCGAGCCAATCACGGTTTGTCCACCCA 3’

R

5’ AACTGCAGGACAGCAACTCCTTTGAATATCTGA 3’

CP25

F

5’ CGGAATTCCTTTGGCAGTTTATTCTTGACA 3’

R

5’ AACTGCAGAACAGTACTATGTGATTATACCAGC 3’

PCR system (50ul)

parameters

procedure

temperature

time

premix taq(TaKaRa)

25ul

PreDenature

94

10 min

primer F

2ul

Denature

94

30 sec

primer R

2ul

Annealing

55

30 sec

plasmids

diluted 100×

1ul

Extension

72

30 sec

dNTPs

included in premix

Final Elongation

72

10 min

buffer

Final Hold

16

H2O

20ul

Cycle

30 cycles

Part preparation by PCR (F, short for Flocculation)

primers

F

5’ GCTCTAGAATGAGTCTACTTGCTGTTTTGTTTT 3’

R

5' AACTGCAGTTACGAATTCGAGCTCGGTAC 3'

PCR system (50ul)

parameters

procedure

temperature

time

premix taq(TaKaRa)

25ul

PreDenature

94

10 min

primer F

2ul

Denature

94

30 sec

primer R

2ul

Annealing

55

30 sec

plasmids

diluted 100×

1ul

Extension

72

1.5 min

dNTPs

included in premix

Final Elongation

72

10 min

buffer

Final Hold

16

H2O

20ul

Cycle

30 cycles

P1 parts’ PCR product 1,2. smtO-P; 3-6. smtB; 8-11. F; Marker (DL2000)

P2 PCR product of CP25; Marker (DL2000)

Double digestion (NEB)

SmtB

substrate

EcoR I

Spe I

Cutsmart

Buffer

H2O

total

temperature

time

BBa_E1010

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

PCR product

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

SmtO-P, CP25

substrate

EcoR I

Pst I

1×H

Buffer

H2O

total

temperature

time

BBa_E1010

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

PCR product

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

F

substrate

Xba I

Pst I

1×M

Buffer

H2O

total

temperature

time

BBa_E1010

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

PCR product

30ul

3ul

3ul

10ul

54ul

100ul

37

16 h

Ligation (TaKaRa DNA Ligation Kit Ver.2.1see manual)

Solution I

-plasmid-   & -Part-

total

temperature

time

5ul

5ul in total (see note)

10ul

16

30 min

Note:-plasmid-:-BCP-(mole number)=1:2~1:8

Transformationsee protocol

Colony PCR

PCR system (20ul)

parameters

procedure

temperature

time

premix taq(TaKaRa)

10ul

PreDenature

94

5 min

primer F

0.8ul

Denature

94

30 sec

primer R

0.8ul

Annealing

55

30 sec

template:   pick a single colony and dip in H2O

8.4ul

Extension

72

30 sec/1.5   min

Final   Elongation

72

10 min

dNTPs

included   in premix

Final Hold

16

buffer

Cycle

30 cycles

Note:1.  The   template was heat denatured at 100 in metal bath, then freeze on ice for 2   min

before   running through parameters on the right.

2. Extension time: 30 sec for smtB, smtO-P and CP25; 1.5   min for F

3. Use corresponding primers

Miniprep (pSB1C3 with maybe smtB or smtO-P or F or CP25) with TIANprep Mini Plasmid Kit.see protocol

Double digestion (NEB) for detection (refer to the double digestion tables above for details)

plasmids with H2O

enzyme1

enzyme2

buffer

total

temperature

time

16.8ul

0.6ul

0.6ul

2ul

20ul

37

16 h

The sequencing results are consistent with our designation.