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| <p> However, the current domestic research and application are more concentrated in the acidic cellulase.For the study of alkaline cellulase, because of many reasons of the enzyme low producing ability and the low specific activity, it has not yet reached the level of industrialization of production. Therefore,it is of great significance for seeking heat resistance, alkali resistance and specific activity of high quality alkaline cellulase. The SZU-iGEM team through the early study of alkali Bacillus III 23 screened from Inner Mongolia alkali Lake,which can produce enzyme up to 60 U /ml. On the basis of this, the SZU-iGEM team will transformed Escherichia Coli into a high yield, alkali resistance, can secrete alkaline cellulase super machine. This transformation will have a very important role in the sustainable development of resources and environmental protection.</p> | | <p> However, the current domestic research and application are more concentrated in the acidic cellulase.For the study of alkaline cellulase, because of many reasons of the enzyme low producing ability and the low specific activity, it has not yet reached the level of industrialization of production. Therefore,it is of great significance for seeking heat resistance, alkali resistance and specific activity of high quality alkaline cellulase. The SZU-iGEM team through the early study of alkali Bacillus III 23 screened from Inner Mongolia alkali Lake,which can produce enzyme up to 60 U /ml. On the basis of this, the SZU-iGEM team will transformed Escherichia Coli into a high yield, alkali resistance, can secrete alkaline cellulase super machine. This transformation will have a very important role in the sustainable development of resources and environmental protection.</p> |
| <h3>1.Study on enzymatic properties of Alkaline cellulase </h3> | | <h3>1.Study on enzymatic properties of Alkaline cellulase </h3> |
- | <h4> 1.1Determination of the molecular weight of the enzyme protein</h4>
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- | <p> Determined by SDS-PAGE electrophoresis, the results in figure 1. After electrophoresis with Gel Doc2000 (Bio-Rad) by gel scanning. The use of scanning system comes with software Quantity One for determination of molecular weight, measured alkaline cellulase is about 89 kD. Alkaline cellulase belongs to the high molecular weight (MW 80-100 kD) .</p>
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- | <img src="https://static.igem.org/mediawiki/2014/c/c9/SzuA1.png"">
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- | <p> Figure 1 .alkaline cellulase SDS-PAGE electrophoresis</p>
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- | <h4> 1.2 The optimum reaction pH and pH stability</h4> | + | <h4> 1.1 The optimum reaction pH and pH stability</h4> |
- | <p> Take proper amount of the pure enzyme, adding 1% CMC-Na solution of different pH value, according to the conventional method of measuring the enzyme activity, as shown in figure 2. | + | <p> Take proper amount of the pure enzyme, adding 1% CMC-Na solution of different pH value, according to the conventional method of measuring the enzyme activity, as shown in figure 1. |
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- | <p> Fig.2 Effect of pH on the activity and stability</p> | + | <p> Fig.1 Effect of pH on the activity and stability</p> |
| <p> ■ optimum pH value; ◇ pH value stability</p> | | <p> ■ optimum pH value; ◇ pH value stability</p> |
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- | <p> Fig. 2 shows the most suitable alkaline cellulase pH is around 9, as a typical alkaline cellulase. For study on the stability of alkaline cellulase pH, respectively save the pure enzyme solution under different predetermined pH for 30min, then according to the conventional method determine the enzyme activity under pH9. The results showed that, the enzyme in the pH 6-11 range, the enzyme activity can be maintained above 80%. Visible on the alkaline cellulase in weak acidic and alkaline conditions with strong stability.</p> | + | <p> Fig. 1 shows the most suitable alkaline cellulase pH is around 9, as a typical alkaline cellulase. For study on the stability of alkaline cellulase pH, respectively save the pure enzyme solution under different predetermined pH for 30min, then according to the conventional method determine the enzyme activity under pH9. The results showed that, the enzyme in the pH 6-11 range, the enzyme activity can be maintained above 80%. Visible on the alkaline cellulase in weak acidic and alkaline conditions with strong stability.</p> |
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- | <h4>1.3 Research on temperature stability of alkaline cellulase</h4> | + | <h4>1.2 Research on temperature stability of alkaline cellulase</h4> |
| <p> | | <p> |
| The pure enzyme liquid are respectively arranged in the containing 5mM CaCl2 and CaCl2 free system, were placed in different temperature conditions (3℃-80℃) insulation 10min, then determined the enzyme activity of 40℃ to the reaction of 20min (Figure 3). The results showed that, the enzyme 50℃ has better stability, temperature more than 50 ℃ is rapidly inactivated. While the addition of Ca2+ can significantly improve the thermal stability of alkaline cellulase at 50℃-80℃, which is at 55℃ still maintained a high stability and there are still a small number of enzyme activity at 70℃. This indicates that the enzyme protein, alkaline cellulase is excellent in heat resistance of alkaline cellulase, application in production show a good application prospect.</p> | | The pure enzyme liquid are respectively arranged in the containing 5mM CaCl2 and CaCl2 free system, were placed in different temperature conditions (3℃-80℃) insulation 10min, then determined the enzyme activity of 40℃ to the reaction of 20min (Figure 3). The results showed that, the enzyme 50℃ has better stability, temperature more than 50 ℃ is rapidly inactivated. While the addition of Ca2+ can significantly improve the thermal stability of alkaline cellulase at 50℃-80℃, which is at 55℃ still maintained a high stability and there are still a small number of enzyme activity at 70℃. This indicates that the enzyme protein, alkaline cellulase is excellent in heat resistance of alkaline cellulase, application in production show a good application prospect.</p> |
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- | <img src="https://static.igem.org/mediawiki/2014/d/d0/SzuA3.png""> | + | <img width="500" height="300" src="https://static.igem.org/mediawiki/2014/d/d0/SzuA3.png""> |
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- | <p> Fig.3 Effect of Temperature on the stability</p> | + | <p align="center">Fig.2 Effect of Temperature on the stability</p> |
- | <p> ■ without CaCl2; ◇ containing 5mM CaCl2. 30 ℃ enzyme activity was 100%</p> | + | <p align="center">■ without CaCl2; ◇ containing 5mM CaCl2. 30 ℃ enzyme activity was 100%</p> |
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| <h3>2. Expression of alkaline endoglucanase gene in Escherichia coli</h3> | | <h3>2. Expression of alkaline endoglucanase gene in Escherichia coli</h3> |
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| <h4>2.1Construction of recombinant Escherichia coli</h4> | | <h4>2.1Construction of recombinant Escherichia coli</h4> |
| <h5>2.1.1 Obtaining the target gene alkaline cellulase</h5> | | <h5>2.1.1 Obtaining the target gene alkaline cellulase</h5> |
- | <p> From the Bacillus sp. bacteria in 84 h medium, using the EZ-10 spin column Genomic DNA Minipreps Kit (For Beteria) kit to extract genomic total DNA, and alkaline cellulase gene was amplified by PCR method, as shown in figure 4. The expression vector pET-28a (+) of Escherichia coli can make the objective protein periplasmic expression, so in the PCR primers were designed according to the coding sequence of alkaline cellulase mature enzyme protein design. Can be seen from Figure 4, the PCR amplified product size was 1907bp, andalkaline cellulase gene size does not contain the signal peptide coding sequence match. The amplified product was connected to pMD18-T vector for sequence, showed that the amplified sequence is consistent with the corresponding sequence.</p> | + | <p> From the Bacillus sp. bacteria in 84 h medium, using the EZ-10 spin column Genomic DNA Minipreps Kit (For Beteria) kit to extract genomic total DNA, and alkaline cellulase gene was amplified by PCR method, as shown in figure 3. The expression vector pET-28a (+) of Escherichia coli can make the objective protein periplasmic expression, so in the PCR primers were designed according to the coding sequence of alkaline cellulase mature enzyme protein design. Can be seen from Figure 3, the PCR amplified product size was 1907bp, andalkaline cellulase gene size does not contain the signal peptide coding sequence match. The amplified product was connected to pMD18-T vector for sequence, showed that the amplified sequence is consistent with the corresponding sequence.</p> |
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- | <p> Fig.4 alkaline cellulase mature enzyme sequence pcr</p> | + | <p align="center">Fig.3 Alkaline cellulase mature enzyme sequence pcr</p> |
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| <h5>2.1.2 Construction of PET-28a (+) expression vector</h5> | | <h5>2.1.2 Construction of PET-28a (+) expression vector</h5> |
- | <p> Escherichia coli expression vector pET-28a (+) containing Kan+ resistance marker, vector map and multiple cloning sites are shown in figure 5A and figure 5B.</p> | + | <p> Escherichia coli expression vector pET-28a (+) containing Kan+ resistance marker, vector map and multiple cloning sites are shown in figure 4A and figure 4B.</p> |
| <b>Construction of recombinant plasmid pET-28a:</b> | | <b>Construction of recombinant plasmid pET-28a:</b> |
| <p> alkaline cellulase gene without signal peptide coding sequence by Hind I and EcoR I enzyme digestion and by the same enzyme digestion Escherichia coli expression vector pET-28a (+) connection, the recombinant plasmid pET-28a.</p> | | <p> alkaline cellulase gene without signal peptide coding sequence by Hind I and EcoR I enzyme digestion and by the same enzyme digestion Escherichia coli expression vector pET-28a (+) connection, the recombinant plasmid pET-28a.</p> |
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- | <img src="https://static.igem.org/mediawiki/2014/b/b8/SzuA5.jpg""> | + | <img width="250" height="250" src="https://static.igem.org/mediawiki/2014/b/b8/SzuA5.jpg""> |
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- | <p> figure 5A. PET-28a (+) expression vector map</p> | + | <p align="center">figure 4A. PET-28a (+) expression vector map</p> |
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- | <img src="https://static.igem.org/mediawiki/2014/c/c2/SzuA6.jpg""> | + | <img width="800" height="180" src="https://static.igem.org/mediawiki/2014/c/c2/SzuA6.jpg""> |
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- | <p> figure 5B. PET-28a (+) expression vector multiple cloning site</p> | + | <p> figure4B. PET-28a (+) expression vector multiple cloning site</p> |
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- | <h5>2.1.3Verification of recombinant gene 3</h5> | + | <h5>2.1.3Verification of recombinant gene</h5> |
- | <p> Pick the single colonies , and then place in the containing kan resistance LB liquid culture medium, 220rpm, 37 degrees overnight culture.The next day extracting bacteria plasmid do PCR verification. The verification results shown in the figure 6, showed that the alkaline cellulase gene was successfully recombination.</p> | + | <p> Pick the single colonies , and then place in the containing kan resistance LB liquid culture medium, 220rpm, 37 degrees overnight culture.The next day extracting bacteria plasmid do PCR verification. The verification results shown in the figure 5, showed that the alkaline cellulase gene was successfully recombination.</p> |
| <p>The ups primer <i>EcoRⅠ</i>: 5’-GATgaattcGAAGGAAACACTCGTGAAGAC-3’</p> | | <p>The ups primer <i>EcoRⅠ</i>: 5’-GATgaattcGAAGGAAACACTCGTGAAGAC-3’</p> |
| <p>The down primer <i>Hind Ⅲ</i>: 5’-GTTaagcttTTATTTTTTCGTAGCCTCTTTC-3’</p> | | <p>The down primer <i>Hind Ⅲ</i>: 5’-GTTaagcttTTATTTTTTCGTAGCCTCTTTC-3’</p> |
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- | <p> Fig.6 The PCR verification of CMCase gene after recombinant plasmid was transformed</p> | + | <p align="center">Fig.5 The PCR verification of CMCase gene after recombinant plasmid was transformed</p> |
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| <h4>2.2 E.coli BL21 Star (DE3) transformation and functional verification</h4> | | <h4>2.2 E.coli BL21 Star (DE3) transformation and functional verification</h4> |
- | <p> Using rapid one-step prepared by state cell kit (SSCS) for preparing E.coli BL21 Star (DE3) competent cells, and the recombinant plasmid pET-28a was transformed into E. coli E.coli BL21 Star (DE3), and the use of containing 25 g/mL kanamycin (Kan) resistant plate screening transformed colonies. After lots of screening can be obtained after the efficient expression of recombinant Escherichia coli strain E.coli, the cultured for 3 days can form a relatively larger transparent circle on LB plate containing CMC (Figure 7). Genomic DNA was extracted from the E.coli strains,in the alkaline cellulase gene 5 'and 3' primer were amplified by PCR, the results show that the transformed strains containing alkaline cellulase genes, as shown in figure 6. The recombinant strains were inoculated into LB liquid culture medium to culture flask, OD value reach 0.6 when added at a final concentration of 1mmol/L IPTG after overnight culture of 15h sampling, and liquid nitrogen freeze-thaw method after disruption of the cells measured the enzyme activity, the results can be detected by endonuclease activity. At the same time, the recombinant strains were sent to Takara company for sequencing, sequencing result showed that the recombinant plasmid carrying genes for gene. Visible, the recombinant plasmid of pET-28a has been successfully transferred into E.coli BL21 Star (DE3).</p> | + | <h5>2.2.1 Determine the activity of Alkaline cellulase by plate method</h5> |
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| + | <p>We transformed the recombinant plasmid pET-28a into E.EcolI BL21 Star(DE3), and cultured on the plate containing 25 g/ml kanamycin (Kan) resistance.</p> |
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- | <p> Fig.7 Halos produced by E.coli on CMC-containing solid plate</p> | + | <p align="center">Fig.6 Halos produced by E.coli on CMC-containing solid plate</p> |
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| + | <p>Results show that Alkaline cellulase can form a large transparent circle in the containing CMC-Na plate by 3 days of culture.</p> |
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| + | <h5>2.2.2 Determine the activity of Alkaline cellulase by DNS method</h5> |
| + | <p>After transforming the recombinant plasmid pET-28a into E.EcolI BL21 Star,we placed it in 23℃, cultured for 48 hours and finally used the CMC-Na DNS method for detection of Alkaline cellulase activity.</p> |
| + | <p>To measure the ability of kil to exogenous protein secretion of Alkaline cellulase,we determine the activity of Alkaline cellulase by DNS colorimetric method.</p> |
| + | <p>As shown in the figure, the more deeper color represents the more amount of Alkaline cellulase secreting out of the Escherichia EcolI , which can express the secretion ability of kil is strong.</p> |
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| + | <img src="https://static.igem.org/mediawiki/2014/b/bc/SzuA10.png"> |
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| + | <p align="center">Fig.7 Using CMC-Na DNS method for detection of Alkaline Cellulase<br>Lane 1.The activity of Alkaline cellulase in cell supernatant of top10<br>Lane 2.The activity of Alkaline cellulase in cells of top10.<br>Lane 3.The activity of Alkaline cellulase in cell supernatant of BL21<br>Lane 4.The activity of Alkaline cellulase in cells of BL21<br>Lane 5.The activity of Alkaline cellulase in cell supernatant of DH5α<br>Lane 6.The activity of Alkaline cellulase in cells of DH5α</p> |
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| + | <h4>2.3The effect of Induction temperature on enzyme expression</h4> |
| + | <p>The recombinant strain E.EcolI were inoculated into LB liquid medium for OD600 value bacteria liquid reaches 0.6,added at a final concentration 1mmol/L of inducer IPTG and placed in different temperature (23℃, 30℃, 37 ℃ ) induction training.Measured enzyme activity after disruption of the cells by timing sampling and repeating freeze-thaw method with liquid nitrogen.The results show in figure 7. From figure 7 visible, the enzyme activity of culturing at 23℃ and 30℃ were higher than the corresponding value at 37℃, and the induction time was reached the peak at 12h. At the same time, found that the enzyme activity decreased significantly at 37 ℃ after 9 hours. This is main that the enzyme expression speed is slow at low temperature, which is not easy to form inclusion bodies.At high temperature, the enzyme expression of the speed is too fast, the enzyme protein is not enough time to fold the mature and active enzyme protein , which is easy to form inactive inclusion body. Considering the induced temperature is too low will affect cell growth, therefore, the choice of induction temperature 23℃ to 30℃ is appropriate.</p> |
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| + | <img src="https://static.igem.org/mediawiki/2014/c/ca/SzuA11.png"> |
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| + | <p align="center">Fig.8 Effect of inducing temperature on the expression of endoglucanase</p> |
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| + | <h4>2.4 Detect deinking performance of Alkaline cellulase</h4> |
| + | <p>We put the A4 small paper written words in the control bacteria liquid and the fermentation liquid with Alkaline cellulase, to judge by doing so if there is obvious effect of Alkaline cellulase to deink, so it can be applied to actual production</p> |
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| + | <img src="https://static.igem.org/mediawiki/2014/6/68/SzuA12.jpg"> |
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| + | <p>In contrast to the picture in the control bacteria liquid, the picture in fermentation liquid with Alkaline cellulase has a strong degradation.So the pictures tell us Alkaline cellulase studied by SZU-iGEM has a good deinking ability,and it will have a good application prospect.</p> |
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| </article> | | </article> |