Team:SJTU-Software/Requirement/Notebook

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<span class="label"><a href="https://2014.igem.org/Team:SJTU-Software/Requirement/Medal">Medal</a></span>
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<span class="label"><a href="https://2014.igem.org/Team:SJTU-Software/Requirement/Collaboration">Collaboration</a></span>
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<span class="label"><a href="https://2014.igem.org/Team:SJTU-Software/Requirement/Notebook">Notebook</a></span>
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                           <p class="text"  style="margin:2% 60px auto"><font face="Microsoft YaHei" size="5px"  color="#FFFFFF">Introduction</font></p>
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                             <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">This is our time table;
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                             <p class="text"  style="margin:3% 60px auto"><font face="Helvetica" size="3px"  color="#242424">This is our time table:
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                          <p class="text"  style="margin:5% 60px auto"><font face="Microsoft YaHei" size="5px"  color="#FFFFFF">EASY BBK:</font></p>
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<p class="text"  style="margin:5% 60px auto"><font face="Microsoft YaHei" size="4px"  color="#FFFFFF">An EASY Biobrick Blueprint’s <br>pacKage
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                            <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">Digging into the current biobrick database maintained by the iGEM foundation, we have found the current biobrick database is difficult for users to interpret and find biobricks of good quality. In addition, different types of biobricks which were presented in the previous biosystems varied from each other so greatly that even the most experienced synthetic biologists might find it difficult to interpret the biosystem the teams had created.<br>
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Given the above reasons, we have constructed an Easy Biobrick Blueprint’s pacKage (EASY BBK) to solve the problems. Its functions are listed as follows.
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                            <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">This function is provide to users to search and evaluate the candidate biobricks based on keywords or part names. It can help users to decide if an existing biobrick meets their requirements before they start their experiments.<br>
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The searching engine is based on a database converted from the iGEM biobrick database (Date, or version number). There are 27,093 biobricks in the database If the input are one or more keywords, the biobricks related to the keywords will be listed, sorted and displayed to the users. Advanced search mode is also provided to refine or sort the search results based.
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Besides, users can search the biobrick database based on sequence similarity. If users input a DNA sequence,  the hit sequences in the database by NCBI Blastn will be returned, sorted by their E-values and displayed.
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                           <p class="text" style="margin:2% 60px auto"><font face="Microsoft YaHei" size="5px"  color="#FFFFFF">3.Gold</font></p>
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                            <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">In addition to the Bronze and Silver Medal requirements, two additional goals must be achieved: <br><br>
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1. Provide a convincing validation, testing the performance of the development -- experimentally (can be outsourced) or by other teams and users. Note, even if the algorithm or tool turns out not to work that well, the Gold requirement is fulfilled if the test is good and the analysis convincing. Validation may include: preferably experiments, informatics analysis (complexity, run time) of an algorithm, or user studies.<br><br>
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　<tr><th rowspan="1"><font >Time</font><th colspan="0">Event
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And the second goal can be any one of the following:<br><br>
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　<tr><th>2013.12<td>Recruited Team members for 2014 iGEM in Shanghai Jiao Tong University (SJTU)
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1. Make your software interact / interface with the Registry.<br><br>
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  <tr><th>2014.1<td>Elected the team leaders of the wetlab, drylab and human practice
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  <tr><th>2014.2~2014.3<td>Researched the previous projects winning gold medals, especially software projects
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  <tr><th>2014.3<td>Made the decision to set up a software team in SJTU
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  <tr><th>2014.3~2014.4<td>Communicated our idea to the professors in our school and received approval to set up a software team
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  <tr><th>2014.4<td>Applied and registered our team at iGEM Headquarters
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  <tr><th>2014.4~2014.6<td>Judged final idea for the project
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  <tr><th>2014.7<td>Started working for the project
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  <tr><th>2014.8.3~2014.8.7<td>Four team members attended the Second iGEM Conference in National Chiao Tung University (NCTU)
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  <tr><th>2014.8.15~2014.8.17<td>Three team members attended meetup of software teams in China in University of Science and Technology of China (USTC)
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  <tr><th>2014.8.25<td>Code changed from C# to Java.
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  <tr><th>2014.9.10<td>"Easy BBK" database completed.
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  <tr><th>2014.9.25<td>The assessment model for biobricks completed.
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2. Re-use and further develop previous iGEM software projects (or parts thereof) or use and/or improvement of existing synthetic biology tools or frameworks.<br><br>
 
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3. Develop a well documented library or API for other developers (rather than “only” a stand-alone app for end users.)
 
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4. iGEM projects involve important questions beyond the bench, for example relating to (but not limited to) ethics, sustainability, social justice, safety, security, or intellectual property rights. Describe an approach that your team used to address at least one of these questions. Evaluate your approach, including whether it allowed you to answer your question(s), how it influenced the team’s scientific project, and how it might be adapted for others to use (within and beyond iGEM). We encourage thoughtful and creative approaches, and those that draw on past Policy & Practice (formerly Human Practices) activities.<br><br>
 
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                           <p class="container2" style="margin:0 5% auto"><font face="SimSun" size="4px"  color="#FFFFFF">SJTU-Software,Shanghai,China</font></p>
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Latest revision as of 22:34, 16 October 2014




Introduction

This is our time table:



　
TimeEvent 　
2013.12Recruited Team members for 2014 iGEM in Shanghai Jiao Tong University (SJTU)
2014.1Elected the team leaders of the wetlab, drylab and human practice
2014.2~2014.3Researched the previous projects winning gold medals, especially software projects
2014.3Made the decision to set up a software team in SJTU
2014.3~2014.4Communicated our idea to the professors in our school and received approval to set up a software team
2014.4Applied and registered our team at iGEM Headquarters
2014.4~2014.6Judged final idea for the project
2014.7Started working for the project
2014.8.3~2014.8.7Four team members attended the Second iGEM Conference in National Chiao Tung University (NCTU)
2014.8.15~2014.8.17Three team members attended meetup of software teams in China in University of Science and Technology of China (USTC)
2014.8.25Code changed from C# to Java.
2014.9.10"Easy BBK" database completed.
2014.9.25The assessment model for biobricks completed. 　


iGemdry2014@163.com

SJTU-Software,Shanghai,China

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