Team:SJTU-Software/Project/Tutorial

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                           <p class="text"  style="margin:5% 60px auto"><font face="Microsoft YaHei" size="5px"  color="#FFFFFF">Search</font></p>
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                           <p class="text"  style="margin:5% 60px auto"><font face="Microsoft YaHei" size="5px"  color="#FFFFFF">2.2.1 How to start EASY BBK</font></p>
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                             <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">This function is provide to users to search and evaluate the candidate biobricks based on keywords or part names. It can help users to decide if an existing biobrick meets their requirements before they start their experiments.<br>
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                             <p class="text"  style="margin:3% 60px auto"><font face="Microsoft YaHei" size="3px"  color="#FFFFFF">Software environment: Java SE Development Kit 6 and later version.<br>
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1. Download EASY BBK from github<br>
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The searching engine is based on a database converted from the iGEM biobrick database (Date, or version number). There are 27,093 biobricks in the database If the input are one or more keywords, the biobricks related to the keywords will be listed, sorted and displayed to the users. Advanced search mode is also provided to refine or sort the search results based.  
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2. Download the latest JDK from <a href="http://www.oracle.com/technetwork/java/javase/downloads/index.html" target=blank>http://www.oracle.com/technetwork/java/javase/downloads/index.html</a><br>
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Besides, users can search the biobrick database based on sequence similarity. If users input a DNA sequence,  the hit sequences in the database by NCBI Blastn will be returned, sorted by their E-values and displayed.  
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Revision as of 16:27, 16 October 2014




Tutorial

“Easy BBK(An Easy Biobrick Blueprint’s pacKage)” has four main function: “search”, “compare”, “present”, and “upload”. This part will guide users about how to use this software tool.



2.2.1 How to start EASY BBK

Software environment: Java SE Development Kit 6 and later version.
1. Download EASY BBK from github
2. Download the latest JDK from http://www.oracle.com/technetwork/java/javase/downloads/index.html



Present

Users could draw their biobrick system diagram using EASY BBK. With standardized biobrick icons according to the iGEM Registry, a standardized picture of a biosystem could be plotted using our tool. The result can be exported to a picture file in jpeg, bmp and png format, which could be used for the presentation in the publication, presentation or later design.



Upload

Here, users could not only upload their self-created biobricks to our database, but also submit their form filled out in our software to the Registry to upload their self-created biobricks.



Compare

Multiple biobricks can be selected and compared. You can search and get multiple (up to three) biobricks, and compare them side by side.



SJTU-Software

Shanghai Jiao Tong University

800, Dongchuan Road

200240 Shanghai, China

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