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Team:AMU-Poznan/Modeling
From 2014.igem.org
(Difference between revisions)
| Line 92: | Line 92: | ||
analyzed sequence: | analyzed sequence: | ||
</br>CTAAAGAAGGTATATTGCTGTTGACAGTGAGCGACTGUUUGUAUUCGCCCUAGCGCCTGTGAAGCCACAGATGGGGCGCUAUGGCGAAUACAAACATGCC</br>TACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCA</br> | </br>CTAAAGAAGGTATATTGCTGTTGACAGTGAGCGACTGUUUGUAUUCGCCCUAGCGCCTGTGAAGCCACAGATGGGGCGCUAUGGCGAAUACAAACATGCC</br>TACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCA</br> | ||
| - | + | We always take first generated structure made with default options</br> | |
| + | If there is difference in algoruthm we always take RNA folding over DNA folding</br> | ||
mfold</br> | mfold</br> | ||
| - | + | <img src="" width="60%"> | |
</br> | </br> | ||
RNAstructure</br> | RNAstructure</br> | ||
Revision as of 08:28, 15 October 2014
Survey14.10.2014 31 survey responses: what survey answerers think that RNAi is 
what they think that sh-miRs are
what they think that shRNAs are
what literature do they know about sh-miRs
what they find important in bioinformatic software
what they find important in sh-miR designer
how long will they wait for software response
survey answerers
their sex
and age
ModelingWe decided to pay more attention to model sh-miR molecules with different RNA 2D structure prediction software (we use RNAfold in our software). Here are our results: analyzed sequence: CTAAAGAAGGTATATTGCTGTTGACAGTGAGCGACTGUUUGUAUUCGCCCUAGCGCCTGTGAAGCCACAGATGGGGCGCUAUGGCGAAUACAAACATGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCA We always take first generated structure made with default options If there is difference in algoruthm we always take RNA folding over DNA folding mfold
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