Team:UCSC/Attributions

From 2014.igem.org

(Difference between revisions)

Latest revision as of 19:46, 14 October 2014

Click here to edit this page!

Faculty Advisors

Dr. David Bernick

Ph. D. in Bioinformatics and Biomolecular Engineering, 2010, UC Santa Cruz

Dr. Sandra Dreisbach

Mentors

Hossein Amiri

Logan Mulroney

Graduate Student in Bioengineering

Jeffrey Nivala

Charles Paine

BS in Bioengineering from UCSC, with strong interest in Bioinformatics

Subgroups

Biochemistry

Wade Dugdale, Stas Fridland, Kevin Sweeny

Bioengineering and Genetics

Stas Fridland, Max Genetti, Renee Jocic, Rolando Perez, Vinay Poodari, Dominic Schenone, Saumya Singh, Kaylee Walker

Bioinformatics

Renee Jocic, Chris Lee, Charlie Paine, Lenore Pafford

Ethics

Fundraising

All fundraising was done either through the university directly, or from our crowd funding page at Experiment.com

References

Spring Journal Club Articles

This course was designed to weed out potential project topics, and trained students in academic article research.

Atsumi, Shota, Anthony F. Cann, Michael R. Connor, Claire R. Shen, Kevin M. Smith, Mark P. Brynildsen, Katherine J.y. Chou, Taizo Hanai, and James C. Liao. "Metabolic Engineering of Escherichia Coli for 1-butanol Production." Metabolic Engineering 10.6 (2008): 305-11. ScienceDirect. Web.

Bond-Watts, Brooks B., Robert J. Bellerose, and Michelle C Y Chang. "Enzyme Mechanism as a Kinetic Control Element for Designing Synthetic Biofuel Pathways." Nature Chemical Biology 7.4 (2011): 222-27. Web.

Lim, Jae Hyung, Sang Woo Seo, Se Yeon Kim, and Gyoo Yeol Jung. "Model-driven Rebalancing of the Intracellular Redox State for Optimization of a Heterologous N-butanol Pathway in Escherichia Coli." Metabolic Engineering 20 (2013): 56-62. Web.

Timpson, Leanne M., Ann-Kathrin Liliensiek, Diya Alsafadi, Jennifer Cassidy, Michael A. Sharkey, Susan Liddell, Thorsten Allers, and Francesca Paradisi. "A Comparison of Two Novel Alcohol Dehydrogenase Enzymes (ADH1 and ADH2) from the Extreme Halophile Haloferax Volcanii." Applied Microbiology and Biotechnology 97.1 (2013): 195-203. Web.

Yamamoto, Shogo, Masako Suda, Satoko Niimi, Masayuki Inui, and Hideaki Yukawa. "Strain Optimization for Efficient Isobutanol Production Using Corynebacterium Glutamicum Under Oxygen Deprivation." Biotechnology and Bioengineering 110.10 (2013): n. pag. Wiley Online Library. Web.

Zaigler, Alexander, Stephan C. Schuster, and Jörg Soppa. "Construction and Usage of a Onefold-coverage Shotgun DNA Microarray to Characterize the Metabolism of the Archaeon Haloferax Volcanii." Molecular Microbiology 48.4 (2003): 1089-105. Web.

@@ Line 6: / Line 6: @@
 <html>
-<body style="background-color:#3E98B4" >
+<body>
-<a href = "https://2014.igem.org/wiki/index.php?title=Team:UCSC/Attributions&action=submit">Click to edit</a>
+<p style="color:#F7EB06"> <a href="https://2014.igem.org/wiki/index.php?title=Team:UCSC/Attributions&action=edit"style="color:PaleGoldenrod"> Click here  to edit this page!</a> </p>
-<!--main content -->
 <!--main content -->
 <head>
@@ Line 16: / Line 14: @@
 width:100%; /* Menu width */
 height:35px;
-padding-left:14px;
+padding-left:12px;
-background:#BC8F8F; /* Background color */
+background: SteelBlue;/* Background color */
-border-radius: 10px;
+background-size: 100%;
 }
 .menu {
@@ Line 24: / Line 22: @@
 margin:0;
 list-style:none;
-height:35px;
+height:75px;
 position:relative;
 z-index:5;
@@ Line 38: / Line 36: @@
 height:45px;
 line-height:34px;
-color:#ccc;
+color:gold;
 text-decoration:none;
 font-family:Tahoma, Geneva, sans-serif;
-font-size:14px; /* Font size */
+font-size:18px; /* Font size */
-font-weight:bold;
+padding:0 0 0 10px;
-padding:0 0 0 12px;
 cursor:pointer;
 }
@@ Line 70: / Line 67: @@
 left:0;
 top:35px;
-background:#333; /* Submenu background color */
+background:SteelBlue; /* Submenu background color */
 padding:3px;
 white-space:nowrap;
@@ Line 96: / Line 93: @@
 .menu li ul.sub li a.fly {
 /* Submenu Background Color */
-background:#333 url(http://2.bp.blogspot.com/-38QeToUdU48/UWmqpRNO-LI/AAAAAAAADP4/A4AJhnSm0Fg/s1600/arrow_over.gif) 185px 10px no-repeat;}
+background:RosyBrown
+}
 .menu li:hover ul.sub li a:hover {
-background:#515151; /* Background Color on mouseover */
+background:#orange; /* Background Color on mouseover */
-color:#fff;
+color: white;
 }
 .menu li:hover ul.sub li a.fly:hover, .menu li:hover ul li:hover > a.fly {
@@ Line 118: / Line 116: @@
 height:auto;
 }
-#search {
-width: 228px; /* Width of the Search Box */
+#wrapperHeader{
-height: 50px;
+   width: 100%;
-float: right;
+   height: 320px;
-z-index: 2;
+   background:RosyBrown url(https://static.igem.org/mediawiki/2014/thumb/8/84/UCSC_Pafford_JBaskin.jpg/448px-UCSC_Pafford_JBaskin.jpg) no-repeat top left;
-text-align: center;
+   text-align: right;
-margin-top: 5px;
-margin-right: 6px;
-/* Background of the Search Box */
-background: url(http://2.bp.blogspot.com/-kSPW07r2Ct8/UazXPD9DbfI/AAAAAAAADtE/UyopBgIPe-w/s1600/searchBar1.png) no-repeat;
 }
-#search-box {
+#wrapperHeader div#header {
-margin-top: 3px;
+ width:1000px;
-border:0px;
+ height:200px;
-background: transparent;
+ margin:0 auto;
-text-align:center;
+}
+myh1{
+    color: gold;
+    text-align: center;
+    font-size: 70px;
+}
+myh2{
+    color: orange;
+    text-align: center;
+    font-size: 50px;
+}
+myh3{
+    color: RosyBrown;
+    text-align: center;
+    font-size: 40px;
+}
+myh4{
+    color: SpringGreen;
+    font-family:Tahoma, Geneva, sans-serif;
+    text-align: center;
+    font-size: 15px;
+}
+myh5{
+    color: SteelBlue;
+    text-align: center;
+    font-size: 20px;
 }
 </style>
 </head>
+<div id="wrapperHeader">
+<div id="header"><br>
+<myh1><br><br><br><br><b>Attributions</b></myh1></div>
+</div>
 <div id='menuWrapper'>
 <ul class='menu'>
-<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC"style="color:#000000"><span>HOME</span></a></li>
+<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC"><span><b>HOME</b></span></a></li>
 <li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Project"><span class='down'>Project</span></a>
 <ul class='sub'>
 <li><a href = "https://2014.igem.org/Team:UCSC/Project">Project Overview</a>
-<li><a href="https://2014.igem.org/Team:UCSC/Modeling">Modeling</a>
+<li><a href="https://2014.igem.org/Team:UCSC/Parts">Parts</a></li>
-<li><a href="https://2014.igem.org/Team:UCSC/Parts">Parts</a>
+<li><a href="https://2014.igem.org/Team:UCSC/Safety">Safety</a></li>
 </ul>
 </li>
-<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Team">Team</a>
+<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Bioethics"><span class='down'>Bioethics</span></a>
-<ul class='sub'><li><a href='https://igem.org/Team.cgi?year=2014&team_name=UCSC'>Official Profile</a></li>
-<li><a href="https://2014.igem.org/Team:UCSC/Team">Team Members</a></li></ul>
-</li>
 <li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Notebook"><span class='down'>Notebook</span></a>
 <ul class='sub'>
-<li><a href="https://2014.igem.org/Team:UCSC/Safety">Safety</a></li>
 <li><a href="https://2014.igem.org/Team:UCSC/Notebook">Interactive Schedule</a></li>
+<li><a href="https://2014.igem.org/Team:UCSC/Modeling">Models</a></li>
 </ul>
 </li>
-<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Attributions"><span>Attributions</span></a>
+<li class='top'><a class='top_link' href="https://2014.igem.org/Team:UCSC/Team">Team</a>
+<ul class='sub'><li><a href='https://igem.org/Team.cgi?year=2014&team_name=UCSC'>Official Profile</a></li>
+<li><a href="https://2014.igem.org/Team:UCSC/Team">Undergrad Researchers</a></li>
+<li><a href = "">The Bioethics Team</a>
+<li><a href="https://2014.igem.org/Team:UCSC/Attributions">Attributions</a></li>
+</li>
+</ul>
+<li class='top'><a class='top_link' href="https://2014.igem.org/Meetups/August_UCSC"><span><b>Our Meetup</b></span></a>
+</li>
+<li class='top'><a class='top_link' href="https://experiment.com/projects/sustainable-next-generation-biofuel-production"><span><myh4><b> Thank you, Donors!</b></myh4></span></a>
 </li>
 </ul>
 </div>
-<a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="110px" align = "center"></a>
-<a href= "http://www.ucsc.edu/"> <img src="https://static.igem.org/mediawiki/2014/6/6c/UCSC_School_Logo.jpg" width="350px" align = "center"></a>
+<br>
+<a href= "http://www.ucsc.edu/"> <img src="https://static.igem.org/mediawiki/2014/9/94/UCSC_School_Logo_white.jpg" height = "100px" align = "center"></a>
+<a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" height = "100px" align = "center"></a>
+<a href = "http://www.geneious.com/"> <img src= "https://static.igem.org/mediawiki/2014/d/d6/Genious_logo.png" height = "100px" align = "center"></a>
+<a href = "https://us.vwr.com/"> <img src= "https://static.igem.org/mediawiki/2014/4/4f/Sponsors_Logo_VWR.jpg" height = "60px" align = "center"></a>
 <tr>
+<br><br><br>
 <!--Attributions content -->
+<myh2>Faculty Advisors </myh2><br><br>
+<myh3>Dr. David Bernick</myh3><br>
+<p> Ph. D. in Bioinformatics and Biomolecular Engineering, 2010, UC Santa Cruz</p>
+<br><br>
+<myh3>Dr. Sandra Dreisbach</myh3><br>
+<br><br>
+<myh2> Mentors </myh2><br><br>
+<myh3>Hossein Amiri</myh3><br><br>
+<myh5></myh5>
+<br><br>
+<myh3>Logan Mulroney </myh3><br><br>
+<myh5>Graduate Student in Bioengineering</myh5>
+<br><br>
+<myh3> Jeffrey Nivala</myh3><br><br>
+<myh5></myh5>
+<br><br>
+<myh3> Charles Paine </myh3><br><br>
+<myh5>BS in Bioengineering from UCSC, with strong interest in Bioinformatics</myh5>
+<br><br><br>
+<myh2>Subgroups</myh2><br><br>
+<myh3>Biochemistry</myh3><br>
+<p>Wade Dugdale, Stas Fridland, Kevin Sweeny</p>
+<br><br>
+<myh3>Bioengineering and Genetics</myh3><br>
+<p>Stas Fridland, Max Genetti, Renee Jocic, Rolando Perez, Vinay Poodari, Dominic Schenone, Saumya Singh, Kaylee Walker</p>
+<br><br>
+<myh3>Bioinformatics</myh3><br>
+<p>Renee Jocic, Chris Lee, Charlie Paine, Lenore Pafford</p>
+<br><br>
+<myh3>Ethics</myh3><br>
+<p></p>
+<br><br><br>
+<myh2>Fundraising </myh2><br><br>
+<p> All fundraising was done either through the university directly, or from our crowd funding page at <a href = "https://experiment.com/projects/sustainable-next-generation-biofuel-production"> Experiment.com </a> </p>
+<br><br><br>
+<myh2> References </myh2><br><br>
+<myh3> Spring Journal Club Articles</myh3><br><br>
+<myh5> This course was designed to weed out potential project topics, and trained students in academic article research.</myh5>
+<p>
+<br>Atsumi, Shota, Anthony F. Cann, Michael R. Connor, Claire R. Shen, Kevin M. Smith, Mark P. Brynildsen, Katherine J.y. Chou, Taizo Hanai, and James C. Liao. "Metabolic Engineering of Escherichia Coli for 1-butanol Production." Metabolic Engineering 10.6 (2008): 305-11. ScienceDirect. Web.<br>
+<br>Bond-Watts, Brooks B., Robert J. Bellerose, and Michelle C Y Chang. "Enzyme Mechanism as a Kinetic Control Element for Designing Synthetic Biofuel Pathways." Nature Chemical Biology 7.4 (2011): 222-27. Web.<br>
+<br>Lim, Jae Hyung, Sang Woo Seo, Se Yeon Kim, and Gyoo Yeol Jung. "Model-driven Rebalancing of the Intracellular Redox State for Optimization of a Heterologous N-butanol Pathway in Escherichia Coli." Metabolic Engineering 20 (2013): 56-62. Web.<br>
+<br>Timpson, Leanne M., Ann-Kathrin Liliensiek, Diya Alsafadi, Jennifer Cassidy, Michael A. Sharkey, Susan Liddell, Thorsten Allers, and Francesca Paradisi. "A Comparison of Two Novel Alcohol Dehydrogenase Enzymes (ADH1 and ADH2) from the Extreme Halophile Haloferax Volcanii." Applied Microbiology and Biotechnology 97.1 (2013): 195-203. Web.<br>
+<br>Yamamoto, Shogo, Masako Suda, Satoko Niimi, Masayuki Inui, and Hideaki Yukawa. "Strain Optimization for Efficient Isobutanol Production Using Corynebacterium Glutamicum Under Oxygen Deprivation." Biotechnology and Bioengineering 110.10 (2013): n. pag. Wiley Online Library. Web.<br>
+<br>Zaigler, Alexander, Stephan C. Schuster, and Jörg Soppa. "Construction and Usage of a Onefold-coverage Shotgun DNA Microarray to Characterize the Metabolism of the Archaeon Haloferax Volcanii." Molecular Microbiology 48.4 (2003): 1089-105. Web.
+</p>
+<!--
 <tr><td > <h3> iGEM Team attributions page</h3></td>
 <td ></td >
-<td > <h3> </h3></td>
+<td > <h3></h3></td>
 </tr>
@@ Line 241: / Line 347: @@
 </ol>
 </td>
+-->
 </tr>
 </table>
 </html>