Team:UCSD Software/Teaml

From 2014.igem.org

(Difference between revisions)
Line 2: Line 2:
<html>
<html>
-
 
+
    <head>
-
  <head>
+
        <title>About</title>
-
     
+
        <meta charset="UTF-8">
-
    <meta charset="utf-8">
+
        <meta name="viewport" content="width=device-width, initial-scale=1.0">
-
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+
        <link rel="stylesheet" href="//maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css">
-
    <meta name="viewport" content="width=device-width, initial-scale=1">
+
        <script src="https://code.jquery.com/jquery-2.1.1.min.js"></script>
-
    <meta name="description" content="">
+
        <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js"></script>
-
    <meta name="author" content="">
+
        <script src="http://ajax.googleapis.com/ajax/libs/jquery/1.11.1/jquery.min.js"></script>
-
    <link rel="shortcut icon" href="../../assets/ico/favicon.ico">
+
        <link rel="stylesheet" href="masterCSS.css">
-
    <link rel="icon" href="http://i.imgur.com/QLCgo.jpg" type="image/x-icon">
+
        <script src="masterJS.js"></script>
-
    <link href="http://s3.amazonaws.com/codecademy-content/courses/ltp/css/shift.css" rel="stylesheet">
+
    </head>
-
   
+
    <body>
-
    <link rel="stylesheet" href="http://s3.amazonaws.com/codecademy-content/courses/ltp/css/bootstrap.css">
+
        <!--navbar -->
-
    <link rel="stylesheet" href="main.css">
+
        <div class="container-fluid">
-
    <title>Kartikeya Puri</title>
+
           
-
  </head>
+
            <!--navbar -->
-
 
+
          
-
  <body>  
+
            <nav class="navbar navbar-header nav-justified" role="navigation" id='nav'>
-
    <div class="nav">
+
                <div class="btn-group  btn-group">
-
      <div class="container">
+
                    <div class="btn btn-lg " id="home">Home</div>
-
 
+
                    <div class="btn btn-lg " id="about">About</div>
-
         <ul class = "pull-left">
+
                    <div class="btn btn-lg " id="documentation">Documentation</div>
-
          <li><a href="#">Home</a></li>
+
                    <div class="btn btn-lg" id="wiki">Wiki</div>
-
          <li><a href="back.html">About</a></li>
+
                    <div class="btn btn-lg" id="app">App</div>
-
          <li><a href="back.html">Project</a></li>
+
                  <div class="btn btn-lg" id="contact">Contact</div>
-
          <li><a href="back.html">The Team</a></li>
+
                   
-
          <li><a href="http://ucsd.edu/">UCSD</a></li>
+
              </div>
-
          <li><a href="ubic.html">UBIC</a></li>
+
             
-
        </ul>
+
                <form class="navbar-form navbar-right" role="search">
-
        <ul class = "pull-right">
+
                <div class="form-group ">
-
          <li><a href="back.html">Sign Up</a></li>
+
                <input type="email" class="form-control text-warning input-sm"  placeholder="Email" id="userName">
-
          <li><a href="back.html">Log In</a></li>
+
                <input type ="text" class="form-control text-primary input-sm" placeholder="Password" id="userPassword">
-
          <li><a href="contact.html">Contact</a></li>
+
                </div>
-
        </ul>
+
                <button class="btn btn-primary btn-sm " id="registration">Log In</button>
-
      </div>
+
                <button class="btn btn-primary btn-sm" id='registerMe' >Register</button>
-
    </div>
+
                </form>
-
 
+
               
-
    <div class="jumbotron">
+
               
-
      <div class="container">
+
            </nav>
-
          <h1>Kartikeya <small>Puri</small></h1>
+
     
-
        <p>19. Junior @ UCSD. Aspiring Software Engineer.</p>
+
         </div>
-
        <a href="about.html">Learn More</a>
+
        <!--navbar ends-->
-
      </div>
+
        <!--profiles-->
-
    </div>
+
        <div class="container">
-
 
+
            <div class="row" id="groupInfo">
-
    <div class = "neighborhood-guides">
+
                <div class="thumbnail" id="mainPic">
-
        <div class = "container">
+
                     <img class="img-responsive" src="ProfilePics/igemlogo.png">
-
            <h2>Bombay to San Diego</h2>
+
                     <div class="caption">
-
            <p>Hi! I am a junior at UC San Diego studying Computer Science. I am originally from
+
                       
-
              Bombay, India and came to the United States after completing high school in India.
+
                             Genetic circuits are often difficult to engineer, requiring months to design, build, and test each individual genetic device involved in the circuit. SBiDer, a web tool developed by the UCSD Software iGEM team, will leverage existing devices to construct a database with consideration for the function of each device interpreted as boolean logic. The data can be queried by the user through SBiDer's visual interface to explore circuit designs. The displayed circuit's literature reference, characterization data, and images of included devices can be viewed through the built-in table. Basic validation of the circuit performance is also provided within in the interface. SBiDer's web of information can be expanded through user-generated additions to the database to improve the efficiency of the application and the accuracy of the models.
-
              I am currently part of UCSD's research team that is involved in the International
+
                     
-
              Genetically Engineered Machine competition (iGEM), which is the premiere undergraduate
+
-
              Synthetic Biology competition. I will be strongly involved in both, the front-end and
+
-
              the back-end aspects of the web application that we will be building this summer. </p>  
+
-
         </div>
+
-
    </div>
+
-
   
+
-
    <div class="learn-more">
+
-
  <div class="container">
+
-
              <h2>UCSD iGEM 2014</h2>
+
-
<div class = "row">
+
-
                     <div class = "col-md-4">
+
-
<h3>About us</h3>
+
-
<p> We are a team of highly motivated undergraduate students and PhD candidates.  
+
-
                            We are trying to build an online application for visualizing the network of synthetic
+
-
                            genetic circuits. This could prove to be a super handy application for researchers around the world.
+
-
                        </p>
+
-
                    </div>
+
-
                     <div class = "col-md-4">
+
-
<h3>Authors</h3>
+
-
<p>Jenhan Tao, Justin Huang, Huwate (Kwat) Yeerna, Ivonnie Shih, Joaquin Reyna, Lauren Crudup,
+
-
                             Valeriy Sosnovskiy, Gary Le, Tiffany Liu, Fred, Fernando Contreras, Rohit Mande,
+
-
                            Camellia Lee, Benjamin Kellman, Kartikeya Puri.
+
-
                        </p>
+
-
                    </div>
+
-
                    <div class = "col-md-4">
+
-
<h3>Contact us</h3>
+
-
<p>Feel free to reach out to us if you have any questions or suggestions for us. You can e-mail us at one of the  
+
-
                            following e-mail IDs:
+
-
                            jenhantao@gmail.com, justin.k.huang@gmail.com, bkellman@eng.ucsd.edu.</p>
+
                     </div>
                     </div>
 +
                   
 +
                </div>
 +
            </div>
 +
           
 +
            <!--undergrads-->
 +
            <div class="row text-center" id="undergraduates">
 +
                <h1>The Team </h1>
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Huwate.jpg">
 +
                        <h2>Huwate Yeerna</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics, 2015</li>
 +
                            <li><a href="https://www.linkedin.com/in/hyeerna">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Joaquin.jpg">
 +
                        <h2>Joaquin Reyna</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics, 2015</li>
 +
                            <li><a href="">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                    <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="http://3.images.spike.com/images/shows/blue-mountain-state/articles/thad_jail_blog2.jpg?quality=0.91">
 +
                        <h2>Valeriy Sosnovskiy </h2>
 +
                        <ul>
 +
                            <li>Biochemistry, Computer Science, 2015</li>
 +
                            <li><a href="https://www.linkedin.com/profile/view?id=306167421&trk=nav_responsive_tab_profile">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                   
 +
                </div>
 +
            <div class="row text-center" id="undergraduates">
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Lauren.jpg">
 +
                        <h2>Lauren Crudup </h2>
 +
                        <ul>
 +
                            <li>Bioengineering, 2015</li>
 +
                            <li><a href="https://www.linkedin.com/profile/view?id=210400159&trk=nav_responsive_tab_profile_pic">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Gary.JPG">
 +
                        <h2>Gary Le</h2>
 +
                        <ul>
 +
                            <li>Human Biology, Business, 2017</li>
 +
                            <li><a href="https://www.linkedin.com/pub/gary-le/a3/720/639">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                    <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/KP.jpg">
 +
                        <h2>Kartikeya Puri</h2>
 +
                        <ul>
 +
                            <li>Computer Science, 2016</li>
 +
                            <li><a href="https://www.linkedin.com/pub/kartikeya-puri/73/557/a09">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                   
 +
                </div>
 +
            <div class="row text-center" id="undergraduates">
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Fred.jpg">
 +
                        <h2>Luyao Zhou</h2>
 +
                        <ul>
 +
                            <li></li>
 +
                            <li><a href="https://www.linkedin.com/profile/view?id=240077984&authType=NAME_SEARCH&authToken=k-dM&locale=en_US&trk=tyah&trkInfo=tarId%3A1411758557752%2Ctas%3Aluyao%20zhou%2Cidx%3A1-4-4">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="ProfilePics/Fernando.jpg">
 +
                        <h2>Fernando Contreras</h2>
 +
                        <ul>
 +
                            <li>Biosystems, 2017</li>
 +
                            <li><a href="https://www.linkedin.com/profile/view?id=372964518&trk=nav_responsive_tab_profile">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                    <div class="col-md-4">
 +
                    <div class="thumbnail" id="underPic">
 +
                        <img class="img-circle" src="">
 +
                        <h2></h2>
 +
                        <ul>
 +
                            <li></li>
 +
                            <li><a href="">LinkedIn</a></li>
 +
                            <li></li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                   
 +
                </div>
 +
            <!--end of undergrads-->
 +
            <h1>Advisors</h1>
 +
            <!--graduates-->
 +
            <div class="row text-center" id="graduates">
 +
               
 +
               
 +
                <div class="col-md-6">
 +
                    <div class="thumbnail text-center" id="gradPic">
 +
                        <img class="img-circle" src="ProfilePics/Jenhan.jpg">
 +
                        <h2>Jenhan Tao</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics PhD, 2018<br>
 +
                            Bioengineering, UC Berkeley, 2012
 +
                            </li>
 +
                            <li><a href="https://www.linkedin.com/pub/jenhan-tao/1a/763/83b">LinkedIn</a></li>
 +
                                   
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-6">
 +
                    <p class="pull-left">
 +
                                Jenhan is a PhD student in the Bioinformatics and Systems Biology program at UCSD. He's interested in utilizing computational technqiues to increase our capacity to understand complex biological problems such as cell signalling. This is Jenhan's second year working as an iGEM mentor. Previously Jenhan was involved in synthetic biology research as an iGEM team member at Boston University and as a research assistant at UC Berkeley, the BioFAB, and Boston University.
 +
                                </p>
 +
                </div>
 +
                   
 +
                   
 +
                </div>
 +
            <div class="row text-center" id="graduates">
 +
               
 +
               
 +
                <div class="col-md-6">
 +
                    <div class="thumbnail text-center" id="gradPic">
 +
                        <img class="img-circle" src="ProfilePics/Justin.jpg">
 +
                        <h2>Justin Huang</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics PhD, 2018<br>
 +
                            Biology,Mathematics University of North Carolina-Chapel Hill, 2013
 +
                            </li>
 +
                            <li><a href="www.linkedin.com/in/justinkhuang">LinkedIn</a></li>
 +
                                   
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-6">
 +
                    <p class="pull-left">
 +
                      Justin Huang is a second year Bioinformatics PhD student at UC San Diego. Originally hailing from the great state of North Carolina, Justin completed his undergraduate studies with a BS in Biology and a BA in Mathematics from the University of North Carolina at Chapel Hill in 2013. Justin's research interests are in translational medicine, specifically in the role of translational medicine in cancer. Justin is also an avid sports fan, and an advocate for Asian American issues. You can follow him @huangger on Twitter. 
 +
                    </p>
 +
                </div>
 +
                   
 +
                   
 +
                </div>
 +
            <div class="row text-center" id="graduates">
 +
               
 +
               
 +
                <div class="col-md-6">
 +
                    <div class="thumbnail text-center" id="gradPic">
 +
                        <img class="img-circle" src="ProfilePics/Ben.png">
 +
                        <h2>Benjamin Kellman</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics PhD, 2018<br>
 +
                            Biology, University of Rochester, 2012
 +
                            </li>
 +
                            <li><a href="https://www.linkedin.com/profile/view?id=331388590&authType=NAME_SEARCH&authToken=3p2B&locale=en_US&trk=tyah2&trkInfo=tarId%3A1412133206770%2Ctas%3Aben%2Cidx%3A2-1-2">LinkedIn</a></li>
 +
                                   
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-6">
 +
                    <p class="pull-left">
 +
                        My name is Benjamin Kellman.  I am a PhD student at the University of California at San Diego studying Bioinformatics and Systems Biology.  My work uses existing formalisms in mathematics and computer science to consolidate the spurious information of experimental biology to a more codified rule set; many such reductions have already been made. I hope to apply fundamental biological axioms formalism to increase the power of my biological predictions.
 +
                                </p>
 +
                </div>
 +
                   
 +
                   
 +
                </div>
 +
            <div class="row text-center" id="graduates">
 +
               
 +
               
 +
                <div class="col-md-6">
 +
                    <div class="thumbnail text-center" id="gradPic">
 +
                        <img class="img-circle" src="ProfilePics/Adreas.jpg">
 +
                        <h2>Andreas Dräger</h2>
 +
                        <ul>
 +
                            <li>Bioinformatics PhD, 2018<br>
 +
                            Bioengineering, UC Berkeley, 2012
 +
                            </li>
 +
                            <li><a href="https://www.linkedin.com/in/andreasdraege">LinkedIn</a></li>
 +
                                   
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-6">
 +
                    <p class="pull-left">
 +
                                Jenhan is a PhD student in the Bioinformatics and Systems Biology program at UCSD. He's interested in utilizing computational technqiues to increase our capacity to understand complex biological problems such as cell signalling. This is Jenhan's second year working as an iGEM mentor. Previously Jenhan was involved in synthetic biology research as an iGEM team member at Boston University and as a research assistant at UC Berkeley, the BioFAB, and Boston University.
 +
                                </p>
 +
                </div>
 +
                   
 +
                   
                 </div>
                 </div>
-
  </div>
+
           
-
    </div>
+
            <!--end of graduates-->
 +
            </div>
 +
           
        
        
-
     <div class="something">
+
     </body>
-
      <div class="container">
+
-
        <p>I love and follow the English Premier League. I have been an ardent supporter of <a href = "http://mcfc.co.uk/">Manchester City Football Club</a> for the past 5 years and am looking forward to what the team has got to offer once agian this season! Go City!</p>
+
-
      </div>
+
-
    </div>
+
-
   
+
-
    <!-- Bootstrap core JavaScript
+
-
    ================================================== -->
+
-
    <!-- Placed at the end of the document so the pages load faster -->
+
-
  <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.0/jquery.min.js"></script>
+
-
  <script src="bootstrap.min.js"></script>
+
-
  <script src="docs.min.js"></script>
+
-
 
+
-
 
+
-
   
+
-
  </body>
+
</html>
</html>

Revision as of 10:01, 13 October 2014

About

Genetic circuits are often difficult to engineer, requiring months to design, build, and test each individual genetic device involved in the circuit. SBiDer, a web tool developed by the UCSD Software iGEM team, will leverage existing devices to construct a database with consideration for the function of each device interpreted as boolean logic. The data can be queried by the user through SBiDer's visual interface to explore circuit designs. The displayed circuit's literature reference, characterization data, and images of included devices can be viewed through the built-in table. Basic validation of the circuit performance is also provided within in the interface. SBiDer's web of information can be expanded through user-generated additions to the database to improve the efficiency of the application and the accuracy of the models.

The Team

Huwate Yeerna

Joaquin Reyna

Valeriy Sosnovskiy

  • Biochemistry, Computer Science, 2015
  • LinkedIn

Lauren Crudup

Gary Le

  • Human Biology, Business, 2017
  • LinkedIn

Kartikeya Puri

Luyao Zhou

Fernando Contreras

Advisors

Jenhan Tao

  • Bioinformatics PhD, 2018
    Bioengineering, UC Berkeley, 2012
  • LinkedIn

Jenhan is a PhD student in the Bioinformatics and Systems Biology program at UCSD. He's interested in utilizing computational technqiues to increase our capacity to understand complex biological problems such as cell signalling. This is Jenhan's second year working as an iGEM mentor. Previously Jenhan was involved in synthetic biology research as an iGEM team member at Boston University and as a research assistant at UC Berkeley, the BioFAB, and Boston University.

Justin Huang

  • Bioinformatics PhD, 2018
    Biology,Mathematics University of North Carolina-Chapel Hill, 2013
  • LinkedIn

Justin Huang is a second year Bioinformatics PhD student at UC San Diego. Originally hailing from the great state of North Carolina, Justin completed his undergraduate studies with a BS in Biology and a BA in Mathematics from the University of North Carolina at Chapel Hill in 2013. Justin's research interests are in translational medicine, specifically in the role of translational medicine in cancer. Justin is also an avid sports fan, and an advocate for Asian American issues. You can follow him @huangger on Twitter.

Benjamin Kellman

  • Bioinformatics PhD, 2018
    Biology, University of Rochester, 2012
  • LinkedIn

My name is Benjamin Kellman. I am a PhD student at the University of California at San Diego studying Bioinformatics and Systems Biology. My work uses existing formalisms in mathematics and computer science to consolidate the spurious information of experimental biology to a more codified rule set; many such reductions have already been made. I hope to apply fundamental biological axioms formalism to increase the power of my biological predictions.

Andreas Dräger

  • Bioinformatics PhD, 2018
    Bioengineering, UC Berkeley, 2012
  • LinkedIn

Jenhan is a PhD student in the Bioinformatics and Systems Biology program at UCSD. He's interested in utilizing computational technqiues to increase our capacity to understand complex biological problems such as cell signalling. This is Jenhan's second year working as an iGEM mentor. Previously Jenhan was involved in synthetic biology research as an iGEM team member at Boston University and as a research assistant at UC Berkeley, the BioFAB, and Boston University.

Retrieved from "http://2014.igem.org/Team:UCSD_Software/Teaml"