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| - | <hl> Name of person </hl>
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| - | <li> what they did </li>
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| - | <hl> Kwat </hl>
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| - | <ol>
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| - | <li> Generated Pydoc </li>
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| - | <li> Learnt SQL </li>
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| - | <li> Learnt Petri Nets </li>
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| - | </ol>
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| - | <hl> Lauren </hl>
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| - | <li> Did Learn Python the Hard Way </li>
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| - | <li> Read Python Wiki </li>
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| - | </ol>
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| - | <hl> Gary </hl>
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| - | <ol>
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| - | <li> Read Cytoscape.js API </li>
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| - | </ol>
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| - | <hl> Joaquin </hl>
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| - | <ol>
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| - | <li> Learnt Boolean Networks </li>
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| - | <li> Continued Petri Nets </li>
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| - | <li> Learnt Dynamic Programming and Path Traversal </li>
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| - | </ol>
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| - | <hl> Rohit </hl>
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| - | <ol>
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| - | <li> Learnt Cytoscape </li>
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| - | <li> Learnt Python </li>
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| - | <li> Learnt Petri Nets </li>
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| - | </ol>
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| - | <hl> Fernando </hl>
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| - | <ol>
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| - | <li> Finished command line interface </li>
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| - | <li> Acquired snippet of Linh's database </li>
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| - | </ol>
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| - | <Div class = "container-fluid" id = "two">
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| - | <hl> Kwat </hl>
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| - | <ol>
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| - | <li> Learnt boolean networks </li>
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| - | <li> Continued learning Petri Nets</li>
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| - | </ol>
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| - | <hl> Lauren </hl>
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| - | <li> Learnt Boolean networks</li>
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| - | <li> Continued learning Petri nets </li>
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| - | </ol>
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| - | <hl> Gary </hl>
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| - | <ol>
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| - | <li> Continued playing with Cytoscape.js add/remove nodes </li>
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| - | </ol>
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| - | <hl> Joaquin </hl>
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| - | <li> Learnt Boolean Networks</li>
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| - | <li> Learnt reachability treees </li>
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| - | <li> Developed Entity Relationship Diagram </li>
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| - | </ol>
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| - | <hl> Rohit </hl>
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| - | <ol>
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| - | <li> Learnt Boolean networks </li>
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| - | <li> Found SNAKES- a Python package that utilizes Petri nets </li>
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| - | </ol>
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| - | <hl> Fernando </hl>
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| - | <ol>
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| - | <li> Learnt Boolean networks </li>
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| - | <li> Disambiguated Linh's device composition</li>
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| - | </ol>
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| - | <Div class = "container-fluid" id = "three">
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| - | <hl> Kwat </hl>
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| - | <ol>
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| - | <li> Learnt SQL </li>
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| - | <li> Learnt traversal algorithms </li>
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| - |
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| - | <li> Read assigned papers to populate database </li>
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| - | </ol>
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| - | <hl> Lauren </hl>
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| - | <ol>
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| - | <li> Petri net reading</li>
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| - | <li> CodeAcademy Python tutorials</li>
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| - | <li> BFS/DFS algorithms </li>
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| - | <li> Read papers to fill in database </li>
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| - | </ol>
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| - | <hl> Gary </hl>
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| - | <ol>
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| - | <li> Learnt basics of Angular.js </li>
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| - | </ol>
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| - | <hl> Joaquin </hl>
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| - | <ol>
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| - | <li> SQl columns modification</li>
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| - | <li> Read papers to fill in database </li>
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| - |
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| - | <li> </li>
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| - |
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| - | </ol>
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| - |
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| - | <hl> Rohit </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Learnt SQL </li>
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| - |
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| - | <li> Conceptualized traversal algorithms </li>
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| - |
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| - | <li> Read assigned papers to populate database </li>
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| - | </ol>
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| - | <hl> Fernando </hl>
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| - | <ol>
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| - | <li> Found possible approach to weigh our edges using "Quantitative Estimation of Activity and Quality for Collections of Functional Genetic Elements" and its database </li>
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| - | </ol>
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| - | <hl> Valeriy </hl>
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| - | <ol>
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| - | <li> Started relearning python to work with the traversal as suggested by Jenhan </li>
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| - | </ol>
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| - | <Div>
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| - | <Div class = "container-fluid" id = "four">
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| - |
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| - | <hl> Kwat </hl>
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| - | <ol>
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| - | <li> Learnt HTML </li>
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| - |
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| - | <li> Went over everyone else's codes </li>
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| - |
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| - | </ol>
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| - | <hl> Lauren </hl>
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| - | <ol>
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| - | <li> Wrote code for BFS and DFS </li>
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| - | <li> Learn Python the Hard Way </li>
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| - | <li> Prepared presentation for expanded BFS on Monday </li>
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| - | </ol>
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| - | <hl> Gary </hl>
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| - | <ol>
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| - | <li> Continued shifting through CyNetShare code </li>
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| - | </ol>
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| - | <hl> Joaquin </hl>
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| - | <ol>
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| - | <li> Learnt Bioservices for Miriam</li>
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| - | <li> Read papers to fill in database </li>
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| - | <li> scheme for UUID </li>
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| - | <li> add implicit output list to device table </li>
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| - | <li> promoter sequence database (biobrick registry) </li>
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| - | <li> insert_into_database fix </li>
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| - |
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| - | <li> determine necessary data for device input </li>
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| - |
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| - | </ol>
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| - |
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| - | <hl> Rohit </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Worked on traversal algorithm</li>
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| - |
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| - | </ol>
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| - | <hl> Fernando </hl>
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| - | <ol>
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| - | <li> Continued debugging network</li>
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| - |
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| - | <li> Updated database </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Valeriy </hl>
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| - |
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| - | <ol>
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| - | <li> Learnt Angular.js main functions to use for the website </li>
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| - |
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| - | <li> Went over more CyNetShare code </li>
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| - |
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| - | </ol>
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| - |
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| - | <Div>
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| - |
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| - |
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| - |
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| - | <Div class = "container-fluid" id = "five">
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| - | <hl> Kwat </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Created database structure </li>
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| - |
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| - | <li> Normalization complete </li>
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| - |
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| - | <li> Working on algorithm </li>
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| - |
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| - | <li> Reading on petri nets </li>
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| - |
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| - | <li> Learning about designing wiki </li>
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| - |
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| - | <li> Populating new database </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Lauren </hl>
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| - | <ol>
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| - |
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| - | <li> Edited the Petri Net traversal to accept multiple inputs </li>
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| - |
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| - | <li> Formatted integration of Bolean logic and multiple outputs </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Gary </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Busy with Final Exams </li>
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| - |
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| - | <li> Began outlining Web part of presentation </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Joaquin </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li>Designed a new structure for the database and the traversal</li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Rohit </hl>
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| - |
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| - | <ol>
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| - | <li> Improved BFS algorithm </li>
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| - |
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| - | <li> Populated database </li>
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| - |
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| - | <li> Kept journal clean </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Fernando </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Incorporated NetworkX into script</li>
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| - |
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| - | <li> Began Boolean Satisfiability Problem </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Valeriy </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Worked on designing a specific JSON file to visualize database with CyNetShare
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> KP </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Enabled CyNetShare on his server </li>
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| - |
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| - | <li> Cleaned up web dev part of master branch </li>
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| - |
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| - | </ol>
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| - |
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| - | <Div>
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| - |
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| - |
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| - | <Div class = "container-fluid" id = "six">
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| - | <hl> Kwat </hl>
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| - | <ol>
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| - | <li> Cleaned the database and commented on everyone's data </li>
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| - |
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| - | <li> Worked on search algorithm </li>
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| - |
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| - | <li> Read about Petri nets </li>
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| - |
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| - | <li> Tried to modify traverse algorithm to fit Petri Net model </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Lauren </hl>
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| - | <ol>
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| - | <li> Edited the database </li>
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| - |
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| - | <li> Fixed errors in traversal </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Gary </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Continued to clean up database </li>
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| - |
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| - | <li> Added NOT gate entries to AND gates involving repressors </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Joaquin </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li>Filled database PowerPoint presentation</li>
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| - |
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| - |
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Rohit </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Improved BFS algorithm </li>
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| - |
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| - | <li> Populated database </li>
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| - |
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| - | <li> Kept journal clean </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Fernando </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Incorporated NetworkX into script</li>
| |
| - |
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| - | <li> Began Boolean Satisfiability Problem </li>
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| - |
| |
| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Valeriy </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Worked on designing a specific JSON file to visualize database with CyNetShare
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> KP </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Enabled CyNetShare on his server </li>
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| - |
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| - | <li> Cleaned up web dev part of master branch </li>
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| - |
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| - | </ol>
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| - |
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| - | <Div>
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| - |
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| - |
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| - |
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| - | <Div class = "container-fluid" id = "seven">
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| - |
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| - | <hl> Kwat </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Made a script that parses a user input, searches graph and returns one more more linear searchable space </li>
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| - |
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| - | <li> Learned SNAKES </li>
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| - |
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| - | <li> Learned SQL stored function </li>
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| - |
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| - | <li> Provided Fernando data for analysis </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Lauren </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Added traversal algorithm to presentation</li>
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| - |
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| - | <li> Wrote project description </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Gary </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li> Continued to clean up database </li>
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| - |
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| - | <li> Got CyNetShare running on NetBeans </li>
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Joaquin </hl>
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| - |
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| - | <ol>
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| - |
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| - | <li>Worked on presentation</li>
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| - |
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| - | <li> Started script to get JSON information </li>
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| - |
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| - |
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Rohit </hl>
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| - |
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| - | <ol>
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| - | <li> Added minimum spanning tree slides to presentation </li>
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| - |
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| - | <li> Started learning JSON </li>
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| - |
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| - |
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| - |
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| - | </ol>
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| - |
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| - |
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| - |
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| - | <hl> Fernando </hl>
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| - |
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| - | <ol>
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| - | <li> Read Overpowering the Component Problem and Circuit Simulation of Genetic Networks</li>
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| - |
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| - |
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| - |
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| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Valeriy </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Designed web app page </li>
| |
| - |
| |
| - | <li> Worked on wiki </li>
| |
| - |
| |
| - | <li> Added slides to presentation </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "eight">
| |
| - |
| |
| - | <hl> Kwat </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Finished parser </li>
| |
| - |
| |
| - | <li> Finished database structure</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Changed size/shapes of nodes in CyNetShare</li>
| |
| - |
| |
| - | <li> Began learning Angular UI Bootstrap </li>
| |
| - |
| |
| - | <li> Began working on carousel within CyNetShare </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Added dynamic labels to graph that enumerates lines as they are added</li>
| |
| - |
| |
| - | <li> Got CyNetShare running on NetBeans </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Finished operon, plasmid I.D.s etc. In database</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Worked on JSON</li>
| |
| - |
| |
| - | <li> Edited presentation</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Tiffany</hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Modified pigeon command generator for plasmid to generate commands for each individual operon</li>
| |
| - |
| |
| - | <li> Modified logo </li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Valeriy </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Designed web app page </li>
| |
| - |
| |
| - | <li> Worked on wiki </li>
| |
| - |
| |
| - | <li> Added slides to presentation </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "nine">
| |
| - |
| |
| - | <hl> Kwat </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Got inputs on parser working </li>
| |
| - |
| |
| - | <li> Began working on outputs and verifying codes</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Finished adding line removal buttons to legend</li>
| |
| - |
| |
| - | <li> Cleaned up Web Dev branch </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Populated working data</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Worked on JSON</li>
| |
| - |
| |
| - | <li> Began learning NetworkX</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "ten”>
| |
| - |
| |
| - | <hl> Kwat </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Patched codes together </li>
| |
| - |
| |
| - | <li> Finished database with Joaquin</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Validated database</li>
| |
| - |
| |
| - | <li> Drafted JSON format </li>
| |
| - |
| |
| - | <li> Went remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Parsed excel file into database</li>
| |
| - |
| |
| - | <li> Prepared for presentation </li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Wrote Python script that takes SQL query and outputs JSON</li>
| |
| - |
| |
| - | <li> Began learning Cytoscape.js</li>
| |
| - |
| |
| - | <li> Began learning igraph </li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "eleven”>
| |
| - |
| |
| - | <hl> Kwat </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Worked on poster </li>
| |
| - |
| |
| - | <li> Worked on presentation outline</li>
| |
| - |
| |
| - | <li> Updated traverse code </li>
| |
| - |
| |
| - | <li> Updated Google Drive </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Designed master Python</li>
| |
| - |
| |
| - | <li> Designed device insert page</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Read up on network motif algorithms (mfinder, color-coding, Kavosh)</li>
| |
| - |
| |
| - | <li> Decided on Kavosh</li>
| |
| - |
| |
| - | <li> Began learning CytoKavosh </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Fernando </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Almost finished JSON graph constructor </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Lauren </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Verified database code compatibility with network traversal </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "twelve”>
| |
| - |
| |
| - | <hl> Kwat </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Populated and finalized database </li>
| |
| - |
| |
| - | <li> Combined visualization property with traverse code</li>
| |
| - |
| |
| - | <li> Tested and debugged traversal algorithm </li>
| |
| - |
| |
| - | <li> Started working on presentation </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> No longer remote </li>
| |
| - |
| |
| - | <li> Met with Ryan and Jenhan to refine modeling development directoin </li>
| |
| - |
| |
| - | <li> Decided to use dictionaries of each operon's modeling information </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Populated new database structure</li>
| |
| - |
| |
| - | <li> Implemented dictionaries necessary for traversal</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Continued network analysis with Kavosh</li>
| |
| - |
| |
| - | <li> Began validating database</li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Fernando </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Lauren </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Generated DOT file creator to retrieve node coordinates from GraphViz </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "thirteen”>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Rendered full network JSON </li>
| |
| - |
| |
| - | <li> Tweaked HTML and laid down function frameworks for search box </li>
| |
| - |
| |
| - | <li> Reorganized app HTML for easier styling and positioning </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Fixed operon I.D.s in database creator</li>
| |
| - |
| |
| - | <li> Fixed operon to output transition mapping</li>
| |
| - |
| |
| - | <li> Connected positions to JSON creator </li>
| |
| - |
| |
| - | <li> Worked on Pidgeon </li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Rendered full network on CytoScape</li>
| |
| - |
| |
| - | <li> Attempted to run Linux VirtualBox on my machine to run CytoKavosh</li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Fernando </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Lauren </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Debugged JSON file creator </li>
| |
| - |
| |
| - | <li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <Div class = "container-fluid" id = "fourteen”>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> KP </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Remote </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Gary </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Connected algorithms and servlet between database and SBIDer</li>
| |
| - |
| |
| - | <li> Modified GET requests to accept JSON strings instead of JSON files </li>
| |
| - |
| |
| - | <li> Edited color scheme and style of nodes</li>
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Joaquin </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li>Connected algorithms to servlet between database and SBIDer</li>
| |
| - |
| |
| - | <li>Integrated database into file creator </li>
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Rohit </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> VirtualBox did not work</li>
| |
| - |
| |
| - | <li> Ran CytoKavosh on CSE lab Linux machines and found motifs</li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Fernando </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Worked on SBML modeling script </li>
| |
| - |
| |
| - | <li> Finished QualitativeSpecies class and Modeling class </li>
| |
| - |
| |
| - | </ol>
| |
| - |
| |
| - |
| |
| - |
| |
| - | <hl> Lauren </hl>
| |
| - |
| |
| - | <ol>
| |
| - |
| |
| - | <li> Integrated database into file creator</li>
| |
| - |
| |
| - | <li>
| |
| - |
| |
| - | </ol>
| |
| - | </div>
| |
"
