Team:Dundee/Project

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             <p class="lead">What we did</p>
             <p class="lead">What we did</p>
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            <li class="list-group-item"><a href="#0" class="">Initial planning and cloning strategy</a>
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            <li class="list-group-item"><a href="#1" class="">Building the PQS sensor</a>
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            <li class="list-group-item"><a href="#2" class="">Characterisation</a>  
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             <h2 id="0">Initial planning and cloning strategy</h2>
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            <img  data-alt-src=https://static.igem.org/mediawiki/2014/c/ca/PqsR_system.png src=https://static.igem.org/mediawiki/2014/c/ca/PqsR_system.png />                             
 
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Pseudomonas quinolone signal (2-heptyl-3-hydroxy-4-quinolone) is a quorum-sensing molecule produced by Pseudomonas aeruginosa, which regulates the expression of genes involved in biofilm development and virulence.1 Expression of these traits is mediated through the LysR-type transcriptional regulator, PqsR. Sequence analysis of PqsR predicts that it is a soluble protein but fractionation of P. aeruginosa has shown that the protein is primarily associated with the inner membrane. 2 It is not clear whether this is through the interaction with membrane lipids or with an unidentified integral inner membrane protein. In the presence of PQS, PqsR interacts with the promoter region of the pqsABCDE operon, allowing transcription of the downstream genes.3 We have engineered E. coli to express this signal transduction system for the detection of PQS, with a promoter-less mCherry fused to the pqsA promoter to give a fluorescent output.
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            <h2 id="1">Building the PQS sensor</h2>
 
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Chromosomal DNA from Pseudomonas Aeruginosa PA01 strain was kindly gifted to us by Robert Ryan and Shi-Qi An from The Division of Molecular Microbiology in the College of Life sciences at the University of Dundee. This was used as a template for the amplification of the pqsA promoter.
 
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The pqsA promoter region was cloned into the pSB1C3 plasmid (to give Biobrick (BBa_K1315001), and was then subcloned into pBluescript. Promoterless mCherry was amplified using BBa K562011 as a template and was cloned into pBluescript downstream of the pqsABCDE promoter. The PpqsA-mCherry construct was then subcloned into pUniprom.
 
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The pqsR gene (present in BBa_K1157001) which was designed and cloned by Lin Ang Chieh from iGEM13-NTU-Taida was used as a template for the amplification of pqsR with an
 
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influenza virus haemagglutinin (HA) tag coding sequence, which can be detected with commercial antibodies. This tag was added to the C-terminus of the protein to facilitate immunohistochemistry.
 
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            <img  data-alt-src="hhttps://static.igem.org/mediawiki/2014/8/83/PqsR_plasmid.png" src="https://static.igem.org/mediawiki/2014/8/83/PqsR_plasmid.png" />                             
 
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The plasmid was verified by sequencing.
 
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The completed construct was transformed into E. coli strain MC1061 as a chassis for our biosensor.
 
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            <h2 id="2">Sigmoidal Expression of mCherry in PQS System </h2>
 
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When the PQS system was induced with synthetic PQS, no mCherry was expressed and so the wet team sought the advice of the dry team to find out why and how the situation could be resolved. 
 
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After constructing a series of ordinary differential equations (full derivation can be found in the appendix) we established the following relationship between PQS (Se) and mCherry:
 
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            <img  data-alt-src="https://static.igem.org/mediawiki/2014/4/42/PqsR_HA_blot.png"
 
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Equation (1) was then analysed in MAPLE for varying PQS concentrations using the parameters in table 1.
 
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Figure 2 shows how the concentration of mCherry increases over time. The general trend is that at low concentrations the rate of production of mCherry is slow and at high concentrations the production is fast. 
 
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When the gradients of d[mcherry]/dt were plotted against PQS concentration, figure 3, the result was a sigmoidal curve. This implies that for PQS concentrations below 0.1𝜇M there should be low mCherry production and above 1𝜇M there should be high mCherry production.
 
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We predict that the low expression could correlate to P.aeruginosa being in an acute planktonic state and the high expression to a chronic biofilm state.
 
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            <h2 id="3">Characterisation </h2>
 
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Initially, western blots were undertaken to test for the production of PqsR-HA. We transformed our plasmid encoding PqsR-HA into E. coli strain MC1061 and blotted for recombinant protein production. An overnight culture of the cells was lysed and proteins separated by SDS-PAGE in a 12% acrylamide gel. Anti-HA antibodies linked to horseradish peroxidase were used for detection of PqsR. Fig 3A shows the expression of PqsR within our system.
 
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Latest revision as of 21:05, 9 October 2014

Dundee 2014

Dundee 2014

Project

What we did

References

Retrieved from "http://2014.igem.org/Team:Dundee/Project"