Team:Cambridge-JIC/Marchantia/EnhancerTrap

From 2014.igem.org

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The construct was formed from two plasmids A and B that were given to us by Jim Haseloff and Bernado Pollak respectively.
The construct was formed from two plasmids A and B that were given to us by Jim Haseloff and Bernado Pollak respectively.
The minimal promoter was extracted from plasmid A and inserted in plasmid B. The position of the hygromycin cassette and minimal promotergal4 cassette were exchanged to the position seen below. This was done to place the minimal promoter at the very border of the sequence allowing genomic enhancers to act directly on it.  
The minimal promoter was extracted from plasmid A and inserted in plasmid B. The position of the hygromycin cassette and minimal promotergal4 cassette were exchanged to the position seen below. This was done to place the minimal promoter at the very border of the sequence allowing genomic enhancers to act directly on it.  
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<table>
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<tr>
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<td>LB</td>
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<td>Starting_point_of_integration_of_DNA_into_plant</td>
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</tr>
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<tr>
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<td>minimal_promoter_</td>
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<td>TATAbox_from_35S_(a_standard_promoter)</td>
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</tr>
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<tr>
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<td>GAL4</td>
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<td>Transcription_activator_molecule</td>
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</tr>
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<tr>
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<td>VP-16</td>
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<td>viral_protein_16:_nuclear_localization_tag</td>
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</tr>
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<tr>
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<td>MpEF1a_promoter_+_5’UTR_</td>
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<td>endogenous_early_expressing_promoter</td>
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</tr>
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<tr>
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<td>Hygromycin_resistance_gene</td>
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<td>Hygromycin_Terminator</td>
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</tr>
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<tr>
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<td>Nos_Terminator</td>
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<td>UAS_for_GAL4</td>
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</tr>
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<tr>
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<td>Gal4_activated_Upstream_Activator_Sequence</td>
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<td>VENus</td>
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</tr>
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<tr>
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<td>A_yellow_fluorescent_molecule</td>
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<td>Linker</td>
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</tr>
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<tr>
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<td>N7__</td>
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<td>nuclear_localization_tag</td>
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</tr>
 +
<tr>
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<td>Nos_Terminator</td>
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<td>35S</td>
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</tr>
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<tr>
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<td>CaMV_promoter_for_the_35S_Ribosomal</td>
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<td>RFP</td>
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</tr>
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<tr>
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<td>Red_fluorescent_protein</td>
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<td>Linker</td>
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</tr>
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<tr>
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<td>LTI</td>
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<td>Plasma_membrane_localization_tag</td>
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</tr>
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<tr>
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<td>Terminator</td>
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<td>RB__</td>
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</tr>
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<tr>
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<td>Start_of_integration_of_DNA_into_plant_</td>
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<td>RB__</td>
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</tr>
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</table>
<h3>Example of Uses</h3>
<h3>Example of Uses</h3>

Revision as of 17:07, 8 October 2014

Cambridge iGEM 2014

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Contents

How does an Enhancer Trap work?

An enhancer trap constructs contains a transcription activator (e.g.: GAL4) fused to a weak or basal promoter (TATA box). The construct also contains a reporter gene (e.g.: YFP) fused to a UAS (upstream activator sequence activated by GLA4). This allows YFP to report the GAL4 expression. On its own the basal promoter is insufficient to drive detectable expression of the reporter gene, but can respond to transcriptional enhancers from the genome it is inserted next to.. Once a transgenic line is generated using such a construct it can be crossed with any other transgenic line containing a UAS::GOI (gene of interest). The offspring will express the gene of interest with the same characteristic seen as the reporter gene (e.g.: YFP).

Cambridge-JIC_EnhancerTrapDiagram.png


To sum up the biology of the construct:

  1. A red fluorescent protein expressed all the time, everywhere (to check construct insertion)
  2. A hygromycin selectable marker (to allow only transformant to survive)
  3. A minimal promoter fused to a gal4 sequence (gal4 will be expressed if minimal prom has been inserted next to an enhancer)
  4. A gal4 induced YFP (to be able to detect expression pattern of gal4 by the ‘trapped enhancer’)

Construct Design

The construct was formed from two plasmids A and B that were given to us by Jim Haseloff and Bernado Pollak respectively. The minimal promoter was extracted from plasmid A and inserted in plasmid B. The position of the hygromycin cassette and minimal promotergal4 cassette were exchanged to the position seen below. This was done to place the minimal promoter at the very border of the sequence allowing genomic enhancers to act directly on it.

LB Starting_point_of_integration_of_DNA_into_plant
minimal_promoter_ TATAbox_from_35S_(a_standard_promoter)
GAL4 Transcription_activator_molecule
VP-16 viral_protein_16:_nuclear_localization_tag
MpEF1a_promoter_+_5’UTR_ endogenous_early_expressing_promoter
Hygromycin_resistance_gene Hygromycin_Terminator
Nos_Terminator UAS_for_GAL4
Gal4_activated_Upstream_Activator_Sequence VENus
A_yellow_fluorescent_molecule Linker
N7__ nuclear_localization_tag
Nos_Terminator 35S
CaMV_promoter_for_the_35S_Ribosomal RFP
Red_fluorescent_protein Linker
LTI Plasma_membrane_localization_tag
Terminator RB__
Start_of_integration_of_DNA_into_plant_ RB__

Example of Uses

Targeted Expression Often we do not want the whole of an organism to express our gene of interest but only specific cells in order to minimize variables and get targeted expression. We find a transformed plant that expresses YFP only in the roots (or rhizoids). We cross the line of plant with a plant that contains a gla4UAS_gene-of-interest. The offspring will express the ‘gene of interest’ only in the rhizoids. The gene of interest could be anything from a chromoprotein, to a growth hormone. In this way researchers can target expression to specific cells.
Early Sexual Differentiation we find a transformed plant that expresses YFP only at the onset of male sexual maturation. This gives us a way of sexing plants before full maturation. It also tells us that the gene downstream of the ‘trapped promoter’ will have some interesting properties concerning development and should be looked into.

Progress and Results

The construct has successfully been constructed and sequenced in E-coli. We electroporated the plasmid in Agrobacteria which were grown. Marchantia spores were then co-cultured with the Agrobacteria. We plated the plantlets on hygromycin containing plates. At the moment selection is occurring: only transformed plants with the Hygromycin resistance gene are developing and non-transformants dwindle. Our next step is to re-plate the surviving transformants, to spread them out and allow more effective screening. This is to be done in the next coming days when the plantlets will have reached adequate size. After this screening begins! We very happy with our progress and look forward to finding interesting expression patterns. We’ll keep you up to date with the upcoming results! Keep checking the page out for colourful photos!


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