Team:Paris Saclay/Notebook/September/2
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- | Migration of the PCR done [https://2014.igem.org/Team:Paris_Saclay/Notebook/September/1 yesterday] | + | Migration of the PCR done [https://2014.igem.org/Team:Paris_Saclay/Notebook/September/1#Limone_synthase yesterday] |
photo | photo |
Revision as of 15:44, 4 September 2014
Contents |
Labwork
B-Contruction of the fusion protein
By Hv
We can see that the blue colonies of E.coli are not blue in a simple petri dish with ampicillin. It's a fail. So, to figure our problem we decided to do a sequencing of our plasmids.
We chose 6 colonies from an Xgal-IPTG petri dish:
- 1 completely blue
- 2 blue with a white ring around the blue
- 3 white colony
PS: we found that there is 2 types of blue colonies: completely blue and blue with a white ring around the blue)
We first did a liquid culture in 5 mL of LB.
D- Lemon scent
By Melanie
Limonene synthase
Migration of the PCR done yesterday
photo
well 1= ladder
well 2-6 = pPS5
other well = LS PCR
As we see, there are nothing on our gel so we conclude that we failed to clone LS in pGMETeasy
pPPS5
the photo in the same as previously: We saw a band but we will check another time by PCR to be sure.
pPS3 and pPS4
Plasmid extraction using the plasmid DNA extraction kit and electrophoresis:
[photo]
We conclude that we have done a good manipulation.
Limonene synthase
As we saw that we don't have anything for LS, We try to do other PCR from the Biobrick (BBA762100). We use two enzyme: Dream taq and Vent taq
component | volume |
---|---|
H2O | 42μl |
buffer | 5μl |
dNTPs | 1μl |
iPS66 | 1μl |
iPS67 | 1μl |
DNA | 0.5μl |
enzyme | 0.5μl |
Tubes were placed in PCR machine with the following parameters.
Cycle step | Temperature | Time | Cycle |
---|---|---|---|
Initial denaturation |
98°C |
1 min |
1 |
Denaturation | 98°C | 15 s | 25 - 30 |
Annealing | 52°C | 25 s | 25 - 30 |
Extension | 72°C | 45 s | 25-30 |
Final extension | 72°C | 10 min | 1 |
Final extension | 8°C | hold | 1 |
pPS5
To have more plasmid We do some bacteria culture (pPS5)