Team:Gifu/Notebook
From 2014.igem.org
(Difference between revisions)
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<p class="abc"> Click on a date to see our research activities on that day. </p> | <p class="abc"> Click on a date to see our research activities on that day. </p> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>August</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Mon</td><td>Tue</td><td>Wed</td><td>Thr</td><td>Fri</td><td style="color:blue">Sat</td> | ||
+ | <td style="color:red">Sun</td> | ||
+ | </tr> | ||
+ | <tr class="week"> | ||
+ | <td></td><td></td><td></td><td></td> | ||
+ | <td>1</td><td class="sat">2</td><td class=sun>3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>September</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Mon</td><td>Tue</td><td>Wed</td><td>Thr</td><td>Fri</td><td style="color:blue">Sat</td> | ||
+ | <td style="color:red">Sun</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td><td></td><td></td><td></td><td></td><td></td><td></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | |||
Revision as of 01:13, 4 September 2014
Calender
Click on a date to see our research activities on that day.
August | ||||||
---|---|---|---|---|---|---|
Mon | Tue | Wed | Thr | Fri | Sat | Sun |
1 | 2 | 3 | ||||
September | ||||||
---|---|---|---|---|---|---|
Mon | Tue | Wed | Thr | Fri | Sat | Sun |
August | September | |||||||||||||||
Mon | Tue | Wed | Thr | Fri | Sat | Sun | Mon | Tue | Wed | Thr | Fri | Sat | Sun | |||
1 | 2 | 3 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |||||||
4 | 5 | 6 | 7 | 8 | 9 | 10 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | |||
11 | 12 | 13 | 14 | 15 | 16 | 17 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | |||
18 | 19 | 20 | 21 | 22 | 23 | 24 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | |||
25 | 26 | 27 | 28 | 29 | 30 | 31 | 29 | 30 |
August
August 11th
Restriction Enzyme Digestion
sample | restriction enzymes |
---|---|
His-RFP(with stop codon) | SpeI,EcoRI | 5'-intron M | SpeI,EcoRI |
Lac-3'intron-RBS | SpeI,EcoRI |
His-RFP(without stop codon) | XbaI,EcoRI |
RBS-Amp | SpeI,EcoRI |
Ligation
- EcoRI-His-RFP(with stop codon)-SpeI + XbaI-DT-Cm-EcoRI
- EcoRI-5'intron M-SpeI + XbaI-DT-Cm-EcoRI
- EcoRI-Lac-3'intron-RBS-SpeI + XbaI-His-RFP(without stop codon)-5'intron-DT-Cm-EcoRI
- EcoRI-His-RFP(without stop codon)-SpeI + SpeI-Amp-EcoRI
Transformation
- -His-RFP(with stop codon)-DT-Cm-
- -5'intron M-DT-Cm-
- -Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm-
- -His-RFP(without stop codon)-Amp-
Densitometry
sample | concentration(ng/µL) |
---|---|
His-RFP(with stop codon) EcoRI-SpeI | 162.6 |
5'intron M EcoRI-SpeI | 45.4 |
Lac-3'intron-RBS EcoRI-SpeI | 120.9 |
His-RFP(without stop codon) EcoRI-SpeI | 160.0 |
His-RFP(without stop codon)-5'intron-DT-Cm XbaI-EcoRI | 174.0 |
Amp EcoRI-SpeI | 101.8 |
August 12th
Colony PCR
- His-RFP(with stop codon)-DT-Cm
- 5'intron M-DT-Cm
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[1]turning red
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[2]turning pink
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[3]turning white
- His-RFP(without stop codon)-Amp
Electrophoresis
- His-RFP(with stop codon)-DT
- His-RFP
- 5'intron M-DT
- 5'intron M
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[1]
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[2]
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[3]
- His-RFP(without stop codon)-5'intron-DT
- His-RFP(without stop codon)
Liquid Culture
- His-RFP(with stop codon)-DT
- 5'intron M-DT
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[1]
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT:[3]
- His-RFP(without stop codon)
August 13th
Miniprep
PCR
By use of KAPA HiFi DNA Polymerase- His-RFP(with stop codon)-DT-Cm
- 5'intron M-DT-Cm
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[1]turning red
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[3]turning white
Electrophoresis
- His-RFP(with stop codon)-DT-Cm
- 5'intron M-DT-Cm
- DNA Ladder Markers DNA Ladder One(Broad Range)
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[1]turning red
- Lac-3'intron-RBS-His-RFP(without stop codon)-5'intron-DT-Cm:[3]turning white
Restriction Enzyme Digestion
sample | restriction enzymes |
---|---|
His-RFP(with stop codon)-DT-Cm | EcoRI,XbaI |
5'intron M-DT-Cm | EcoRI,XbaI |
Densitometry
sample | concentration(ng/µL) |
---|---|
EcoRI-Lac-RBS-SpeI | 65.0 |
XbaI-His-RFP(with stop codon)-DT-Cm-EcoRI | 188.8 |
EcoRI-His-RFP(with stop codon)-SpeI | 160.0 |
EcoRI-His-RFP(without stop codon)-SpeI | 160.0 |
XbaI-5'intron M-DT-Cm-EcoRI | 167.8 |
Ligation
- EcoRI-Lac-RBS-SpeI + XbaI-His-RFP(with stop codon)-DT-Cm-EcoRI
- EcoRI-His-RFP(with stop codon)-SpeI + XbaI-5'intron M-DT-Cm-EcoRI
- EcoRI-His-RFP(without stop codon)-SpeI + XbaI-5'intron M-DT-Cm-EcoRI
Transformation
- -Lac-RBS-His-RFP(with stop codon)-DT-Cm-
- -His-RFP(with stop codon)-5'intron M-DT-Cm-
- -His-RFP(without stop codon)-5'intron M-DT-Cm-
August 16th
Liquid Culture
August 18th
Plasmid Extraction
- -Lac-RBS-His-RFP(with stop codon)-DT-Cm-
- -His-RFP(with stop codon)-5'intron M-DT-Cm-
- -His-RFP(without stop codon)-5'intron M-DT-Cm-
Plasmid Purification
- -5'intron M-His-RFP(with stop codon)-
- -5'intron M-His-RFP(without stop codon)-
Miniprep
Colony PCR
Restriction Enzyme Digestion
sample | restriction enzymes |
---|---|
-His-RFP(with stop codon)-5'intron M-DT-Cm- | EcoRI,XbaI |
-His-RFP(without stop codon)-5'intron M-DT-Cm- | EcoRI,XbaI |
Densitometry
sample | concentration(ng/µL) |
---|---|
EcoRI-Lac-3'intron-RBS-SpeI | 120.0 |
XbaI-His-RFP(with stop codon)-5'intron M-DT-Cm-EcoRI | 187.8 |
XbaI-His-RFP(without stop codon)-5'intron M-DT-Cm-EcoRI | 158.9 |
Ligation&Transformation
- EcoRI-Lac-3'intron-RBS-SpeI + XbaI-His-RFP(with stop codon)-5'intron M-DT-Cm-EcoRI
- EcoRI-Lac-3'intron-RBS-SpeI + XbaI-His-RFP(without stop codon)-5'intron M-DT-Cm-EcoRI
Analysis of DNA sequences
August 19th
Colony PCR
Electrophoresis
Shaking Culture
August 20th
Colony PCR
Same as August 19th Colony PCR.
August 21th
Reagent Preparation
Protein Extraction
SDS-PAGE
August 22th
Prorein Purification by use of Ni-NTA
SDS-PAGE
August 23th
Prorein Purification by use of Ni-NTA
SDS-PAGE
August 24th
Extraction of plasmid device
August 25th
Extraction of plasmid device
SDS-PAGE
- Lac-3'intron-RBS-His-RFP-5'intron M-DT-Cm
August 26th
PCR
Restriction Enzyme Digestion
sample | restriction enzymes |
---|---|
His-RFP(with stop codon) | EcoRI,PstI |
His-RFP(without stop codon) | EcoRI,PstI |
5'intron M | EcoRI,PstI |
Lac-3'intron-RBS | EcoRI,PstI |
TTHA0175 | EcoRI,SpeI |
Densitometry
sample | concentration(ng/µL) |
---|---|
His-RFP(with stop codon) | 180.7 |
His-RFP(without stop codon) | 164.6 |
5'intron M | 37.7 |
Lac-3'intron-RBS | 107.5 |
TTHA0175 | 112.7 |