Team:UCLA/Project/Spinning Silk

From 2014.igem.org

(Difference between revisions)
Line 59: Line 59:
<p><b>Step 2: Solubilization</p></b>
<p><b>Step 2: Solubilization</p></b>
-
<p>Getting significant amounts of silk (>0.25 grams) into solution requires the use of lithium bromide <sup>[1]</sup>. Protocols with less hazardous chemicals were attempted, yet none were able to reproduce results obtained using lithium bromide. The silk is cut into small pieces and dissolved in a scintillation vial at 60 degrees Celcius for 4 hours. </p>
+
<p>Getting significant amounts of silk (>0.25 grams) into solution requires the use of lithium bromide <sup><a href="#references">[1]</a></sup>. Protocols with less hazardous chemicals were attempted, yet none were able to reproduce results obtained using lithium bromide. The silk is cut into small pieces and dissolved in a scintillation vial at 60 degrees Celcius for 4 hours. </p>
<figure style= "margin: 10px; float: right;" align="middle">
<figure style= "margin: 10px; float: right;" align="middle">
Line 67: Line 67:
<p><b>Step 3: Dialysis</b></p>
<p><b>Step 3: Dialysis</b></p>
-
<p>Dialysis of the Fibroin-Lithium Bromide solution removes the lithium bromide, and results in an aqueous solution of the fibroin protein<sup>[1]</sup>. This solution can then be processed further in a variety of ways to achieve various structures and conformations of the silk protein.</p>
+
<p>Dialysis of the Fibroin-Lithium Bromide solution removes the lithium bromide, and results in an aqueous solution of the fibroin protein<sup><a href="#references">[1]</a></sup>. This solution can then be processed further in a variety of ways to achieve various structures and conformations of the silk protein.</p>
<figure style= "margin: 10px; float: right;" align="middle">
<figure style= "margin: 10px; float: right;" align="middle">
Line 75: Line 75:
<p><b>Material - Silk Films</b></p>
<p><b>Material - Silk Films</b></p>
-
<p>Silk films are the simplest way of processing the silk. The silk can be processed directly after dialysis. Dialyzed silk is simply dehydrated and the remaining silk aggregates into a film (protocol link). This simplicity may prove to be an asset as researchers investigate these films for next-generation medicine. The biodegradability of the films allows for technology like conformal electronics to be bio-integrated<sup>[2]</sup>.</p>
+
<p>Silk films are the simplest way of processing the silk. The silk can be processed directly after dialysis. Dialyzed silk is simply dehydrated and the remaining silk aggregates into a film (protocol link). This simplicity may prove to be an asset as researchers investigate these films for next-generation medicine. The biodegradability of the films allows for technology like conformal electronics to be bio-integrated<sup><a href="#references">[2]</a></sup>.</p>
<figure style= "margin: 10px; float: right;" align="middle">
<figure style= "margin: 10px; float: right;" align="middle">
Line 90: Line 90:
<p><b>Material - Fibers</b></p>
<p><b>Material - Fibers</b></p>
-
Silk fibers are the most traditional form. Fibers can be formed from silk that has gone through the lyophilization process and has been resuspended in HFIP. From resuspension, the solution is ‘spun’ into fibers, as detailed below. Silk fibers as a biomedical device are intended to be used as the structural material for scaffolds to assist with re-engineered tissues. Silk scaffolds have the ability to be integrated into bones, cartilage, vascular tissue, and even skin <sup>[3]</sup>.
+
Silk fibers are the most traditional form. Fibers can be formed from silk that has gone through the lyophilization process and has been resuspended in HFIP. From resuspension, the solution is ‘spun’ into fibers, as detailed below. Silk fibers as a biomedical device are intended to be used as the structural material for scaffolds to assist with re-engineered tissues. Silk scaffolds have the ability to be integrated into bones, cartilage, vascular tissue, and even skin <sup><a href="#references">[3]</a></sup>.
           <p><br/><br/></p>
           <p><br/><br/></p>
Line 97: Line 97:
<p><b>Syringe Extrusion</b></p>
<p><b>Syringe Extrusion</b></p>
-
<p>The standard method that we are using to produce silk fibers is syringe extrusion, in which a syringe pump forces silk dope through a small-diameter tube into a liquid isopropanol coagulation bath<sup>[1]</sup>. This method most directly emulates the process that spiders use. In a natural spider spinneret, silk solution produced in the spider's glands are forced through small-diameter spinnerets, and expelled as solid threads.</p>
+
<p>The standard method that we are using to produce silk fibers is syringe extrusion, in which a syringe pump forces silk dope through a small-diameter tube into a liquid isopropanol coagulation bath<sup><a href="#references">[1]</a></sup>. This method most directly emulates the process that spiders use. In a natural spider spinneret, silk solution produced in the spider's glands are forced through small-diameter spinnerets, and expelled as solid threads.</p>
   
   
<figure style= "margin: 10px; float: right;" align="middle"><a href = "http://2014.igem.org/wiki/images/1/1c/Syringe_extruder.JPG"><img src= "http://2014.igem.org/wiki/images/1/1c/Syringe_extruder.JPG" width = 25% height = 25% /></a><figcaption style="margin: auto;">Our team's syringe extruder. It consists of a gas chromatography syringe (Hamilton Co.) in a syringe pump (Pump Systems, Inc.)</figcaption></figure>
<figure style= "margin: 10px; float: right;" align="middle"><a href = "http://2014.igem.org/wiki/images/1/1c/Syringe_extruder.JPG"><img src= "http://2014.igem.org/wiki/images/1/1c/Syringe_extruder.JPG" width = 25% height = 25% /></a><figcaption style="margin: auto;">Our team's syringe extruder. It consists of a gas chromatography syringe (Hamilton Co.) in a syringe pump (Pump Systems, Inc.)</figcaption></figure>
Line 119: Line 119:
<img src= "http://2014.igem.org/wiki/images/7/77/RJS.gif" width = 25% height = 25% />
<img src= "http://2014.igem.org/wiki/images/7/77/RJS.gif" width = 25% height = 25% />
</a>
</a>
-
<figcaption style="margin: auto;">The rotary jet spinner, designed and diagrammed by the Parker lab at MIT<sup>[4]</sup>.</figcaption></figure>
+
<figcaption style="margin: auto;">The rotary jet spinner, designed and diagrammed by the Parker lab at MIT<sup><a href="#references">[4]</a></sup>.</figcaption></figure>
-
<p>A final method for fiber production that we worked with is rotary jet spinning. Rotary jet spinning is very similar to centrifuge extrusion, in that the dope is spun at very high speeds and centrifugal force pushes the dope out of the channel. However, in rotary jet spinning, the dope is loaded into a reservoir that is mounted vertically onto a motor shaft. This method does not allow for the usage of a coagulation bath, as the reservoir holding the dope must be spun in air<sup>[4]</sup>. If the reservoir were to be spun in a liquid bath, the resultant turbulence in the bath would cause structural instability and destroy the apparatus.</p>
+
<p>A final method for fiber production that we worked with is rotary jet spinning. Rotary jet spinning is very similar to centrifuge extrusion, in that the dope is spun at very high speeds and centrifugal force pushes the dope out of the channel. However, in rotary jet spinning, the dope is loaded into a reservoir that is mounted vertically onto a motor shaft. This method does not allow for the usage of a coagulation bath, as the reservoir holding the dope must be spun in air<sup><a href="#references">[4]</a></sup>. If the reservoir were to be spun in a liquid bath, the resultant turbulence in the bath would cause structural instability and destroy the apparatus.</p>
Line 130: Line 130:
     <div class= "content_subsection" id="post_spin_processing">
     <div class= "content_subsection" id="post_spin_processing">
           <h2>Post-Spin Stretch</h2>
           <h2>Post-Spin Stretch</h2>
-
           <p>A very important part of creating fibers from expressed recombinant silk is the stretching of the fiber after it has been extruded. This can be observed in actual spiders, who tug on the silk threads they produce in order to stretch them. This stretching not only results in longer lengths of threads to work with, it confers extra strength and elasticity to the fibers <sup>[5]</sup>.
+
           <p>A very important part of creating fibers from expressed recombinant silk is the stretching of the fiber after it has been extruded. This can be observed in actual spiders, who tug on the silk threads they produce in order to stretch them. This stretching not only results in longer lengths of threads to work with, it confers extra strength and elasticity to the fibers <sup><a href="#references">[5]</a></sup>.
</p>
</p>

Revision as of 03:02, 18 October 2014

iGEM UCLA




























Processing Silk

Preparation for Silk Materials

Step 1: Degumming

Silk is comprised of two main proteins, fibroin and sericin. Fibroin is the structural protein of the silk and our protein of interest. Sericin serves as the ‘glue’ of the silk. Degumming separates and removes sericin and is an essential preparation step before dissolving the silk. We found that commercially degummed silk was not properly degummed for our purposes and this step had to be carried out in-lab.

Raw, improperly degummed silk.
Same sample of silk after degumming.

Step 2: Solubilization

Getting significant amounts of silk (>0.25 grams) into solution requires the use of lithium bromide [1]. Protocols with less hazardous chemicals were attempted, yet none were able to reproduce results obtained using lithium bromide. The silk is cut into small pieces and dissolved in a scintillation vial at 60 degrees Celcius for 4 hours.

Silk solubilized in a solution of lithium bromide.

Step 3: Dialysis

Dialysis of the Fibroin-Lithium Bromide solution removes the lithium bromide, and results in an aqueous solution of the fibroin protein[1]. This solution can then be processed further in a variety of ways to achieve various structures and conformations of the silk protein.

Silk solution after dialysis.

Material - Silk Films

Silk films are the simplest way of processing the silk. The silk can be processed directly after dialysis. Dialyzed silk is simply dehydrated and the remaining silk aggregates into a film (protocol link). This simplicity may prove to be an asset as researchers investigate these films for next-generation medicine. The biodegradability of the films allows for technology like conformal electronics to be bio-integrated[2].

Silk film created by drying dialyzed silk overnight.

Material - Hydrogels

A silk hydrogel is a general term for a variety of ‘gel’ structures that can be created from silk. We chose to create a pH induced gel: the nature of this gel creates a chemically alterable microenvironment that can be tailored to optimize conditions for pharmaceuticals, tissues, or other biological agents. Biomedical applications of this technology could range from pain relievers integrated into a suture to tissue wound sealing.

Optional Processing: Lyophilization

Water can be completely removed from the dialyzed silk by the process of lyophilization, or freeze-drying. In this process, the solution is frozen by liquid nitrogen and is sublimated under vacuum for 2-3 days. This results in a pure silk powder that can be stored indefinitely. This silk powder can also be resuspended in solvents such as hexafluoroisopropanol (HFIP) in preparation for spinning into a fiber.

Material - Fibers

Silk fibers are the most traditional form. Fibers can be formed from silk that has gone through the lyophilization process and has been resuspended in HFIP. From resuspension, the solution is ‘spun’ into fibers, as detailed below. Silk fibers as a biomedical device are intended to be used as the structural material for scaffolds to assist with re-engineered tissues. Silk scaffolds have the ability to be integrated into bones, cartilage, vascular tissue, and even skin [3].



Spinning Silk

In order to form fibers from silk, soluble silk protein solutions must be much like how they are in natural spider spinnerets. The majority of spinning methods entail pushing, or extruding, silk solution through very thin channels. During this extrusion, shear forces on the silk solution cause the amino acids of the proteins to align in a way that allows the strong beta sheets of the silk structure to form. Multiple proteins are similarly aligned, causing separate proteins to interact and form larger structures.

Syringe Extrusion

The standard method that we are using to produce silk fibers is syringe extrusion, in which a syringe pump forces silk dope through a small-diameter tube into a liquid isopropanol coagulation bath[1]. This method most directly emulates the process that spiders use. In a natural spider spinneret, silk solution produced in the spider's glands are forced through small-diameter spinnerets, and expelled as solid threads.

Our team's syringe extruder. It consists of a gas chromatography syringe (Hamilton Co.) in a syringe pump (Pump Systems, Inc.)

Centrifuge Extrusion

Another method that we are investigating is centrifuge extrusion, in which a column with a small-diameter channel is loaded with silk dope, and placed into a centrifuge tube containing the coagulation solution. The loaded column and tube are then centrifuged at high speeds, and the resulting centrifugal force extrudes the dope through the channel into the coagulation bath, causing a fiber to form. The extrusion column was designed this past summer by the UCLA iGEM team for rapid, small scale production of experimental fibers.

An "extrusion column." 3D printed with a Stratasys PolyJet printer.


Our extrusion column fits into a 15 mL centrifuge tube, which can be kept empty or hold a coagulation bath.

Rotary Jet Spinning

The rotary jet spinner, designed and diagrammed by the Parker lab at MIT[4].

A final method for fiber production that we worked with is rotary jet spinning. Rotary jet spinning is very similar to centrifuge extrusion, in that the dope is spun at very high speeds and centrifugal force pushes the dope out of the channel. However, in rotary jet spinning, the dope is loaded into a reservoir that is mounted vertically onto a motor shaft. This method does not allow for the usage of a coagulation bath, as the reservoir holding the dope must be spun in air[4]. If the reservoir were to be spun in a liquid bath, the resultant turbulence in the bath would cause structural instability and destroy the apparatus.

Post-Spin Stretch

A very important part of creating fibers from expressed recombinant silk is the stretching of the fiber after it has been extruded. This can be observed in actual spiders, who tug on the silk threads they produce in order to stretch them. This stretching not only results in longer lengths of threads to work with, it confers extra strength and elasticity to the fibers [5].

What We've Done

Over the summer, we carried out steps 1 through 4 of the silk processing procedure according to published protocols (see above). Additionally we made silk pH gels by treating the dialyzed silk with acid. Overnight incubation caused this mixture to solidify into a gel. We have put together our syringe pump extrusion setup based on published protocols. As an alternative, we came up with idea of extruding our silk via centrifugation. We designed and 3d printed a column with a small opening at the bottom that could hold liquid and extrude it when placed in a falcon tube in the centrifuge. Although we have not yet attempted to spin a silk fiber, we have spun fibers from solubilized cellulose acetate using both our syringe pump setup as well as our centrifuge extrusion set up. We have lyophilized our dialyzed silk product, and are ready to resuspend this in HFIP solvent and spin it. As soon as we have mastered either the syringe or centrifuge extrusion techniques, we will be ready to produce a fiber from our Bombyx mori silk proteins.

References

[1]Teulé, Florence, Alyssa R. Cooper, William A. Furin, Daniela Bittencourt, Elibio L. Rech, Amanda Brooks, and Randolph V. Lewis. "A Protocol for the Production of Recombinant Spider Silk-like Proteins for Artificial Fiber Spinning." Nature Protocols 4.3 (2009): 341-55. Web.

[2]Kim, Dae-Hyeong, Jonathan Viventi, Jason J. Amsden, Jianliang Xiao, Leif Vigeland, Yun-Soung Kim, Justin A. Blanco, Bruce Panilaitis, Eric S. Frechette, Diego Contreras, David L. Kaplan, Fiorenzo G. Omenetto, Yonggang Huang, Keh-Chih Hwang, Mitchell R. Zakin, Brian Litt, and John A. Rogers. "Dissolvable Films of Silk Fibroin for Ultrathin Conformal Bio-integrated Electronics." Nature Materials 9.6 (2010): 511-17. Web.

[3] Rockwood, Danielle N., Rucsanda C. Preda, Tuna Yücel, Xiaoqin Wang, Michael L. Lovett, and David L. Kaplan. "Materials Fabrication from Bombyx Mori Silk Fibroin." Nature Protocols 6.10 (2011): 1612-631. Web.

[4]Badrossamay, Mohammad Reza, Holly Alice Mcilwee, Josue A. Goss, and Kevin Kit Parker. "Nanofiber Assembly by Rotary Jet-Spinning." Nano Letters 10.6 (2010): 2257-261. Web.

[5]An, Bo, Michael B. Hinman, Gregory P. Holland, Jeffery L. Yarger, and Randolph V. Lewis. "Inducing β-Sheets Formation in Synthetic Spider Silk Fibers by Aqueous Post-Spin Stretching." Biomacromolecules