Team:UCL

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== Requirements ==
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<html>
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There are a few wiki requirements teams must follow:
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<body class="index">
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* All pages, images and files must be hosted on the [https://2014.igem.org/Special:Upload 2014.igem.org server].
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* All pages must be created under the team’s name space.
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* As part of your documentation, keep the links from the menu to the left.
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* Do not use flash in wiki code.
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* The [https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png iGEM logo] should be placed on the upper part of every page and should link to [2014.igem.org].
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Visit the [https://2014.igem.org/Wiki_How-To Wiki How To page] for a complete list of requirements, tips and other useful information.
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== Tips ==
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{{:Team:UCL/Template:pageheader}}
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<html>
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We are currently working on providing teams with some easy to use design templates.
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<!-- begin #page - the container for everything but header -->
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In the meantime you can also view other team wikis for inspiration! Here are some very good examples
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<div id="page">
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* https://2013.igem.org/Team:SDU-Denmark
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  <!-- CONTENT GOES HERE -->
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* https://2013.igem.org/Team:SYSU-China
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* https://2013.igem.org/Team:Shenzhen_BGIC_ATCG
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    <!--begin slider -->
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* https://2013.igem.org/Team:Colombia_Uniandes
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    <div class="lemmon-wrap clearfix">
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* https://2013.igem.org/Team:Lethbridge
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        <div id="lemmon-slider" class="lemmon-slider">
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            <ul>
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                <li> <a href="/Team:UCL/about">
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                    <!--link to article/post/portfolio entry for the entire image-->
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                    <img src="https://static.igem.org/mediawiki/2014/b/b3/PN_gbad_350x300.png" alt="" /> </a>
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                    <!--end image link-->
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                    <div class="summary">
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                        <!--begin summary-->
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                        <a href="/Team:UCL/about">
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                        <!--begin link to article post or portfolio entry for the caption-->
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                        <h3>About our Project</h3>
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                        <p>Everything there is to know about the science and logistics behind our journey.</p>
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                        </a>
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                        <!--end link to article post or portfolio entry for the caption-->
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                    </div>
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                    <!--end summary-->
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                </li>
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                <li> <a href="/Team:UCL/team_ug"> <img src="https://static.igem.org/mediawiki/2014/8/83/Group_social_350x450.png" alt="" /></a>
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                    <div class="summary">
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                        <a href="/Team:UCL/team_ug">
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                        <h3>Meet the team</h3>
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                        <p>Get to know us! Learn of all our diverse background and how we are all making this iGEM team brilliant. <br>(And that we're not just a team of guys!)</p>
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                        </a>
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                    </div>
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                </li>
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                <li> <a href="/Team:UCL/blog"> <img src="https://static.igem.org/mediawiki/2014/e/ef/EngOpenDay_EG_SJ.png" alt="" /></a>
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                    <div class="summary">
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                        <a href="/Team:UCL/blog">
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                        <h3>Read our blog</h3>
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                        <p>The place where all of our soon to come blogs will reside.</p>
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                        </a>
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                    </div>
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                </li>
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                <li> <a href="/Team:UCL/gallery"> <img src="https://static.igem.org/mediawiki/2014/2/25/Natural-dyes_350x450.png" alt="" /></a>
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                    <div class="summary">
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                        <a href="/Team:UCL/gallery">
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                        <h3>Gallery</h3>
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                        <p>A collection of all of the photos and pics we have, and are taking, in this great journey.</p>
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                        </a>
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                    </div>
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                </li>
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                <li> <a href="/Team:UCL/faq"> <img src="https://static.igem.org/mediawiki/2014/6/6a/Dave_microfluidics_350x300.png" alt="" /></a>
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                    <div class="summary">
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                        <a href="/Team:UCL/faq">
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                        <h3>Frequently asked questions</h3>
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                        <p>Have no idea what we're talking about? Head on over here to have all your questions answered.</p>
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                        </a>
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                    </div>
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                </li>
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                <li> <a href="/Team:UCL/contact"> <img src="https://static.igem.org/mediawiki/2014/3/3c/Prismatic_MosesHarris.jpg" alt="" /></a>
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                    <div class="summary">
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                        <a href="/Team:UCL/contact">
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                        <h3>Contact us</h3>
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                        <p>Have a question or just want to chat? Fire off a message from here.</p>
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                        </a> </div>
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                </li>
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            </ul>
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        </div>
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        <div class="controls"> <a href="#" class="prev-page">Prev Page</a> <a href="#" class="next-page">Next Page</a> </div>
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For a full wiki list, you can visit [https://igem.org/Team_Wikis?year=2013 iGEM 2013 web sites] and [https://igem.org/Team_Wikis?year=2012 iGEM 2012 web sites] lists.  
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    <div class="container clearfix" id="main-content" >
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        <h3 class="short_headline"><span>University College London, iGEM Team 2014 - Goodbye Azo Dye!</span></h3>
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        <p><a href="/Team:UCL/about">Azo dyes</a> are the main synthetic colourant used in a wide range of products, such as clothing, cosmetics, tattoo ink, and more. They are generally known to be safe and stable colour compounds, however, when they are broken down in the guts of organisms, they can result in dangerous, toxic products. In industry, excess textile dyes are often simply washed off and disposed of, without proper treatment to remove the leftover azo dyes in the waste water. As a result, these azo dyes accumulate in rivers and lakes, causing <a href="/Team:UCL/risk">problems</a> further downstream. When animals drink these polluted waters, their gut bacteria will break down and release toxic chemicals. As well as being damaging to the environment, the released chemicals can be mutagenic and carcinogenic, which can further cause health issues to other animals, including humans. </p>
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        <p>The <a href="/Team:UCL/team_ug">UCL iGEM Team 2014</a> are going to build a bacteria with <a href="/Team:UCL/biobricks">BioBricks</a> capable of controlling the break down of excess azo dyes found in industrial waste water. In this way, we can try prevent toxic build-up in the environment, keep our water systems clean, and reduce health problems caused by azo dyes. </p>
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        <p>Specifically, this will involve creating an enhanced azo dye decolourising organism by introducing the genes for three enzymes related to the degradation of these dyes (azoreductase, laccase, and lignin peroxidase) into a host <em>E. coli</em> cell. In an industrial context, these three enzymes would work sequentially in a bioreactor of changing conditions. First, azoreductase will cleave the azo-bond (N=N) by a double reduction using NADPH as a cofactor, producing a series of highly toxic aromatic amines. These compounds will be then oxidised by incorporation of lignin peroxidase and laccase, completing decolourisation and decreasing toxicity levels, to the point that the final products of the process are less toxic than the intact dyes themselves. The complementary action of azoreductase and lignin peroxidase will be studied in order to find out the best possible approach of sequential reaction, and this core degradation module will be extrapolated to other areas such as BioArt projects and work on algal-bacterial symbiosis, trying to set up the foundations for a synthetic ecology. </p>
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        <!--http://bio-gem.tumblr.com/ Bioprocessing website-->
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This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started:  
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        <!-- begin equalHeights columns 3 -->
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        <div class="row-fluid equalHero equalHeights">
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            <div class="span4"> <a href="/Team:UCL/about"><img src="https://static.igem.org/mediawiki/2014/9/9e/About_banner.png" class="aligncenter" alt="" height=100 /></a>
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                <h3><a href="/Team:UCL/about">About our project</a></h3>
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                <p>Find out more about the issues of azo dyes, and how we are using synthetic biology to try solve this problem.</p>
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                <p class="right"><a href="/Team:UCL/about" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span4 -->
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            <div class="span4"> <a href="/Team:UCL/team_ug"><img src="https://static.igem.org/mediawiki/2014/1/1b/Team_banner.png" class="aligncenter" alt="" height=100 /></a>
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                <h3><a href="/Team:UCL/team_ug">Meet the team</a></h3>
 +
                <p>Get to know us! Come find out our diverse and colourful backgrounds, and how we are all going to make this iGEM team brilliant.</p>
 +
                <p class="right"><a href="/Team:UCL/team_ug" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span4-->
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            <div class="span4"> <a href="/Team:UCL/blog"><img src="https://static.igem.org/mediawiki/2014/c/c0/Blog_banner.png" class="aligncenter" alt="" height=100 /></a>
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                <h3><a href="/Team:UCL/blog">Read our blog</a></h3>
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                <p>See what we get up to throughout our project! <br><br><br> </p>
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                <p class="right"><a href="/Team:UCL/blog" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span4 -->
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        </div>
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        <!-- close #equalHeights .featured 3 columns -->
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* State your accomplishments! Tell people what you have achieved from the start.
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        <h3 class="short_headline"><span>Latest updates</span></h3>
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* Be clear about what you are doing and what you plan to do.
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* You have a global audience! Consider the different backgrounds that your users come from.
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        <!-- begin equalHeights columns 4 -->
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* Make sure information is easy to find; nothing should be more than 3 clicks away. 
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        <div class="row-fluid equalHero equalHeights">
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* Avoid using very small fonts and low contrast colors; information should be easy to read.
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            <div class="span3">
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* Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the iGEM 2013 calendar [https://2014.igem.org/Calendar_of_Events].
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                <h3><a href="/Team:UCL/faq">What is iGEM?</a></h3>
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* Have lots of fun!
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                <p>More about the International Genetically Engineered Machine competition. <br><br> </p>
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                <p class="right"><a href="/Team:UCL/faq" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span3-->
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            <div class="span3">
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                <h3><a href="/Team:UCL/synbio">New to Synthetic Biology?</a></h3>
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                <p>Find out more about the exciting new field of synthetic biology! <br><br><br> </p>
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                <p class="right"><a href="/Team:UCL/synbio" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span3 -->
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            <div class="span3">
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                <h3><a href="/Team:UCL/microfluids">The Basics to Microfluidics</a></h3>
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                <p>We'll also be applying the multidisciplinary field of microfluidics to our project. Find out more here!</p>
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                <p class="right"><a href="/Team:UCL/microfluids" class="btn btn-primary">Details &rarr;</a></p>
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            </div>
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            <!-- close .span3 -->
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            <div class="span3">
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                <h3><a href="/Team:UCL/biobricks">BioBrick Parts</a></h3>
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                <p>See what BioBrick parts we'll be creating and characterising to carry out our project. <br><br> </p>
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                <p class="right"><a href="/Team:UCL/biobricks" class="btn btn-primary">Details &rarr;</a></p>
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            <h3 class="short_headline margin-top"><span>Our sponsors</span></h3>
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            <ul class="slides">
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                <li><img src="https://static.igem.org/mediawiki/2014/7/74/BBSRC_logo_2.png" alt="" /></li>
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                <li><img src="https://static.igem.org/mediawiki/2014/d/d7/BioChem_Soc_logo_2.png" alt="" /></li>
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                <li><img src="https://static.igem.org/mediawiki/2014/e/ee/MicroBio_logo_2.png" alt="" /></li>
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                <li><img src="https://static.igem.org/mediawiki/2014/4/43/Wellcome_Trust_logo_2.png" alt="" /></li>
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                <li><img src="https://static.igem.org/mediawiki/2014/1/1a/UCL_Eng_logo_2.png" alt="" /></li>
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            </ul>
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Revision as of 16:13, 14 August 2014

Goodbye Azo Dye : iGEM 2014 - University College London

 

University College London, iGEM Team 2014 - Goodbye Azo Dye!

Azo dyes are the main synthetic colourant used in a wide range of products, such as clothing, cosmetics, tattoo ink, and more. They are generally known to be safe and stable colour compounds, however, when they are broken down in the guts of organisms, they can result in dangerous, toxic products. In industry, excess textile dyes are often simply washed off and disposed of, without proper treatment to remove the leftover azo dyes in the waste water. As a result, these azo dyes accumulate in rivers and lakes, causing problems further downstream. When animals drink these polluted waters, their gut bacteria will break down and release toxic chemicals. As well as being damaging to the environment, the released chemicals can be mutagenic and carcinogenic, which can further cause health issues to other animals, including humans.

The UCL iGEM Team 2014 are going to build a bacteria with BioBricks capable of controlling the break down of excess azo dyes found in industrial waste water. In this way, we can try prevent toxic build-up in the environment, keep our water systems clean, and reduce health problems caused by azo dyes.

Specifically, this will involve creating an enhanced azo dye decolourising organism by introducing the genes for three enzymes related to the degradation of these dyes (azoreductase, laccase, and lignin peroxidase) into a host E. coli cell. In an industrial context, these three enzymes would work sequentially in a bioreactor of changing conditions. First, azoreductase will cleave the azo-bond (N=N) by a double reduction using NADPH as a cofactor, producing a series of highly toxic aromatic amines. These compounds will be then oxidised by incorporation of lignin peroxidase and laccase, completing decolourisation and decreasing toxicity levels, to the point that the final products of the process are less toxic than the intact dyes themselves. The complementary action of azoreductase and lignin peroxidase will be studied in order to find out the best possible approach of sequential reaction, and this core degradation module will be extrapolated to other areas such as BioArt projects and work on algal-bacterial symbiosis, trying to set up the foundations for a synthetic ecology.

About our project

Find out more about the issues of azo dyes, and how we are using synthetic biology to try solve this problem.

Details →

Meet the team

Get to know us! Come find out our diverse and colourful backgrounds, and how we are all going to make this iGEM team brilliant.

Details →

Read our blog

See what we get up to throughout our project!


Details →

Latest updates

What is iGEM?

More about the International Genetically Engineered Machine competition.

Details →

New to Synthetic Biology?

Find out more about the exciting new field of synthetic biology!


Details →

The Basics to Microfluidics

We'll also be applying the multidisciplinary field of microfluidics to our project. Find out more here!

Details →

BioBrick Parts

See what BioBrick parts we'll be creating and characterising to carry out our project.

Details →

Our sponsors

Contact Us

University College London - Gower Street - London - WC1E 6BT - Biochemical Engineering Department
phone: +44 (0)20 7679 2000
email: ucligem2014@gmail.com

Follow Us

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