Team:Oxford/modellingA

From 2014.igem.org

(Difference between revisions)
(Blanked the page)
 
(27 intermediate revisions not shown)
Line 1: Line 1:
-
{{:Team:Oxford/templates/header}}
 
-
<div class="abcdefg">
 
-
<html>
 
-
<div class="container cf row">
 
-
 
-
<head>
 
-
  <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
 
-
  <meta http-equiv="Content-Style-Type" content="text/css">
 
-
  <title></title>
 
-
  <meta name="Generator" content="Cocoa HTML Writer">
 
-
  <meta name="CocoaVersion" content="1265.2">
 
-
 
 
-
<style type="text/css">
 
-
    p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px}
 
-
    p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Helvetica}
 
-
    p.p3 {margin: 0.0px 0.0px 0.0px 0.0px; text-align: right; font: 10.0px Helvetica}
 
-
    span.s1 {letter-spacing: 0.0px}
 
-
    span.s2 {font: 6.7px Helvetica; letter-spacing: 0.0px}
 
-
    table.t1 {border-collapse: collapse}
 
-
    td.td1 {width: 63.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td2 {width: 60.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td3 {width: 40.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td4 {width: 73.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td5 {width: 72.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td6 {width: 74.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td7 {width: 84.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td8 {width: 52.0px; height: 23.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td9 {width: 63.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td10 {width: 60.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td11 {width: 40.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td12 {width: 73.0px; height: 12.0px; background-color: #9ce15a; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td13 {width: 72.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td14 {width: 74.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td15 {width: 84.0px; height: 12.0px; background-color: #64b2df; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td16 {width: 52.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td17 {width: 63.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td18 {width: 60.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td19 {width: 40.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td20 {width: 73.0px; height: 11.0px; background-color: #9ce15a; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td21 {width: 72.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td22 {width: 74.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td23 {width: 84.0px; height: 11.0px; background-color: #64b2df; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td24 {width: 52.0px; height: 11.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td25 {width: 73.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
    td.td26 {width: 84.0px; height: 12.0px; border-style: solid; border-width: 1.0px 1.0px 1.0px 1.0px; border-color: #000000 #000000 #000000 #000000; padding: 4.0px 4.0px 4.0px 4.0px}
 
-
 
 
-
</style>
 
-
</head>
 
-
 
-
 
-
 
-
<body>
 
-
 
-
<h1></h1>
 
-
<h1>[DCM] calibration for solution-vapour equilibration</h1>
 
-
<p>Testing the tolerance of E-coli and Pseudomonas strains to various concentrations of DCM (0mM, 5mM, 10mM, 20mM), the 15 mL falcon tube-contained system is modeled as a binary solution/ideal gas, based on literature solubility data, confirming negligible [DCM] deviation:</p>
 
-
 
-
 
-
 
-
 
-
<img src="http://latex.codecogs.com/gif.latex?k(T)=k^\Theta&space;e^{\frac{\mathrm{d}&space;lnk}{\mathrm{d}&space;1/T}(\frac{1}{T}-\frac{1}{298.15K})}&space;\:&space;;&space;\:k^\Theta=3.9*10^{-6}&space;\:&space;mol&space;\:&space;kg^{-1}&space;Pa^{-1},&space;\frac{\mathrm{d}&space;lnk}{\mathrm{d}&space;1/T}=&space;3900&space;\:K" title="k(T)=k^\Theta e^{\frac{\mathrm{d} lnk}{\mathrm{d} 1/T}(\frac{1}{T}-\frac{1}{298.15K})} \: ; \:k^\Theta=3.9*10^{-6} \: mol \: kg^{-1} Pa^{-1}, \frac{\mathrm{d} lnk}{\mathrm{d} 1/T}= 3900 \:K" />
 
-
 
-
<p class="p1"><br></p>
 
-
<table cellspacing="0" cellpadding="0" class="t1">
 
-
  <tbody>
 
-
    <tr>
 
-
      <td valign="top" class="td1">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td2">
 
-
        <p class="p2"><span class="s1">p(DCM) /kPa</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td3">
 
-
        <p class="p2"><span class="s1">n</span><span class="s2"><sub>(g)</sub></span><span class="s1"> /mol</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td4">
 
-
        <p class="p2"><span class="s1">V(DCM)</span><span class="s2"><sub> </sub></span><span class="s1">added /ml</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td5">
 
-
        <p class="p2"><span class="s1">n(DCM)</span><span class="s2"><sub>(l)</sub></span><span class="s1"> unadjusted /mol</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td1">
 
-
        <p class="p2"><span class="s1">[DCM] unadjusted /M</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td6">
 
-
        <p class="p2"><span class="s1">n(DCM)</span><span class="s2"><sub>(l)</sub></span><span class="s1"> adjusted /mol</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td7">
 
-
        <p class="p2"><span class="s1">[DCM] adjusted /M</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td8">
 
-
        <p class="p2"><span class="s1">[DCM] % deviation</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p2"><span class="s1"><b>(30°C, 5mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td10">
 
-
        <p class="p3"><span class="s1">1.56E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td11">
 
-
        <p class="p3"><span class="s1">3.94E-12</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td12">
 
-
        <p class="p3"><span class="s1">6.4E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td13">
 
-
        <p class="p3"><span class="s1">1.0E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p3"><span class="s1">2.0E-02</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td14">
 
-
        <p class="p3"><span class="s1">1.0E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td15">
 
-
        <p class="p3"><span class="s1"><b>2.0E-02</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td16">
 
-
        <p class="p3"><span class="s1">3.9E-06</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p2"><span class="s1"><b>(30°C, 10mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td18">
 
-
        <p class="p3"><span class="s1">3.12E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td19">
 
-
        <p class="p3"><span class="s1">7.88E-12</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td20">
 
-
        <p class="p3"><span class="s1">3.2E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td21">
 
-
        <p class="p3"><span class="s1">5.0E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p3"><span class="s1">1.0E-02</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td22">
 
-
        <p class="p3"><span class="s1">5.0E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td23">
 
-
        <p class="p3"><span class="s1"><b>1.0E-02</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td24">
 
-
        <p class="p3"><span class="s1">1.6E-05</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p2"><span class="s1"><b>(30°C, 20mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td18">
 
-
        <p class="p3"><span class="s1">6.24E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td19">
 
-
        <p class="p3"><span class="s1">1.58E-11</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td20">
 
-
        <p class="p3"><span class="s1">1.6E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td21">
 
-
        <p class="p3"><span class="s1">2.5E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p3"><span class="s1">5.0E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td22">
 
-
        <p class="p3"><span class="s1">2.5E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td23">
 
-
        <p class="p3"><span class="s1"><b>5.0E-03</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td24">
 
-
        <p class="p3"><span class="s1">6.3E-05</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td10">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td11">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td25">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td13">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td14">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td26">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
      <td valign="top" class="td16">
 
-
        <p class="p1"><br></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p2"><span class="s1"><b>(37°C, 5mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td18">
 
-
        <p class="p3"><span class="s1">1.56E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td19">
 
-
        <p class="p3"><span class="s1">3.94E-12</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td20">
 
-
        <p class="p3"><span class="s1">6.4E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td21">
 
-
        <p class="p3"><span class="s1">1.0E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p3"><span class="s1">2.0E-02</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td22">
 
-
        <p class="p3"><span class="s1">1.0E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td23">
 
-
        <p class="p3"><span class="s1"><b>2.0E-02</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td24">
 
-
        <p class="p3"><span class="s1">3.9E-06</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p2"><span class="s1"><b>(37°C, 10mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td18">
 
-
        <p class="p3"><span class="s1">3.12E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td19">
 
-
        <p class="p3"><span class="s1">7.88E-12</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td20">
 
-
        <p class="p3"><span class="s1">3.2E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td21">
 
-
        <p class="p3"><span class="s1">5.0E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td17">
 
-
        <p class="p3"><span class="s1">1.0E-02</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td22">
 
-
        <p class="p3"><span class="s1">5.0E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td23">
 
-
        <p class="p3"><span class="s1"><b>1.0E-02</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td24">
 
-
        <p class="p3"><span class="s1">1.6E-05</span></p>
 
-
      </td>
 
-
    </tr>
 
-
    <tr>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p2"><span class="s1"><b>(37°C, 20mM)</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td10">
 
-
        <p class="p3"><span class="s1">6.24E-04</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td11">
 
-
        <p class="p3"><span class="s1">1.58E-11</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td12">
 
-
        <p class="p3"><span class="s1">1.6E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td13">
 
-
        <p class="p3"><span class="s1">2.5E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td9">
 
-
        <p class="p3"><span class="s1">5.0E-03</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td14">
 
-
        <p class="p3"><span class="s1">2.5E-05</span></p>
 
-
      </td>
 
-
      <td valign="top" class="td15">
 
-
        <p class="p3"><span class="s1"><b>5.0E-03</b></span></p>
 
-
      </td>
 
-
      <td valign="top" class="td16">
 
-
        <p class="p3"><span class="s1">6.3E-05</span></p>
 
-
      </td>
 
-
    </tr>
 
-
  </tbody>
 
-
</table>
 
-
<p class="p1"><br></p>
 
-
</body>
 
-
</div>
 
-
 
-
</html>
 
-
{{:Team:Oxford/templates/footer}}
 
-
</div>
 

Latest revision as of 01:02, 18 October 2014