Team:Hong Kong HKUST/data

From 2014.igem.org

(Difference between revisions)
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<ul>
<ul>
-
<li> <b>Lock 3C RBS, <a href= "http://http://parts.igem.org/Part:BBa_K1379015">BBa_K1379015</a></b>: B0032 derivate for Lock 3C.
+
<li> <b>RBS(Lock 3c), <a href= "http://http://parts.igem.org/Part:BBa_K1379015">BBa_K1379015</a></b>: B0032 derivate for Lock 3C.
-
<li> <b>HKUST Lock 1, <a href= "http://parts.igem.org/Part:BBa_K1379018"> BBa_K1379018</a></b>: Cis-Repressor HKUST Lock 1.
+
<li> <b>Lock 1-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379020"> BBa_K1379020</a></b>: Cis-repressed GFP Generator Lock 1
-
<li> <b>HKUST Key 1, <a href= "http://parts.igem.org/Part:BBa_K1379019"> BBa_K1379019</a></b>: Trans-Activator for HKUST Key 1.
+
<li> <b>Lock 3-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379022> BBa_K1379022</a></b>: Cis-repressed GFP Generator Lock 3
-
<li> <b>Cis-repressed GFP Lock 1, <a href= "http://parts.igem.org/Part:BBa_K1379020"> BBa_K1379020</a></b>: Cis-repressed GFP Generator Lock 1
+
<li> <b>Lock 3c-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379024> BBa_K1379024</a></b>: Cis-repressed GFP Generator Lock 3C
-
<li> <b>Cis-repressed GFP Generator Lock 3, <a href= "http://parts.igem.org/Part:BBa_K1379022> BBa_K1379022</a></b>: Cis-repressed GFP Generator Lock 3
+
<li> <b>K175031-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379026> BBa_K1379026</a></b>: Cis-repressed GFP Generator MCR
-
<li> <b>Cis-repressed GFP Lock 3C, <a href= "http://parts.igem.org/Part:BBa_K1379024> BBa_K1379024</a></b>: Cis-repressed GFP Generator Lock 3C
+
<li> <b>RBS(Lock 1)-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379046> BBa_K1379046</a></b>: GFP generator using a Lock 1 modified RBS.
-
<li> <b>Cis-repressed GFP Lock MCR, <a href= "http://parts.igem.org/Part:BBa_K1379026> BBa_K1379026</a></b>: Cis-repressed GFP Generator MCR
+
<li> <b>RBS(Lock 3c)-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379047> BBa_K1379047</a></b>: GFP generator using a Lock 3C modified RBS.
-
<li> <b>Cis-repressed GFP HKUST Lock 1, <a href= "http://parts.igem.org/Part:BBa_K1379028> BBa_K1379028</a></b>: Cis-repressed GFP Generator HKUST Lock 1
+
<li> <b>J23102-Lock 1-GFP-B0015-pBad/araC-Key 1-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379048> BBa_K1379048</a></b>: Repression measurement device 1 with trans activator.
-
<li> <b>Lock 1 RBS GFP generator, <a href= "http://parts.igem.org/Part:BBa_K1379046> BBa_K1379046</a></b>: GFP generator using a Lock 1 modified RBS.
+
-
<li> <b>Lock 3C RBS GFP generator, <a href= "http://parts.igem.org/Part:BBa_K1379047> BBa_K1379047</a></b>: GFP generator using a Lock 3C modified RBS.
+
-
 
+
</ul>
</ul>
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<li> <b>Key3, <a href= "http://parts.igem.org/Part:BBa_J01086"> BBa_J01086</a></b>: Biobricked version of Isaacs' riboregulator trans activating key, taR12, and modified version of Riboregulator Key 1.
<li> <b>Key3, <a href= "http://parts.igem.org/Part:BBa_J01086"> BBa_J01086</a></b>: Biobricked version of Isaacs' riboregulator trans activating key, taR12, and modified version of Riboregulator Key 1.
<li> <b>Lock for medium RBS (B0032) from the lock/key library TUD09, <a href="http://parts.igem.org/Part:BBa_K175031"> BBa_K175031</a></b>: This biobrick generates a mRNA which forms a secondary structure blocking the (medium) RBS.
<li> <b>Lock for medium RBS (B0032) from the lock/key library TUD09, <a href="http://parts.igem.org/Part:BBa_K175031"> BBa_K175031</a></b>: This biobrick generates a mRNA which forms a secondary structure blocking the (medium) RBS.
-
<li> <b>B0034 derived RBS to match spacing of J01122, <a href="http://parts.igem.org/Part:BBa_J23080"> BBa_J23080</a></b>: RBS spacing modification to [RBS] such that the spacing between the shine-delgarno and the ORF is the same as it is in J01122.
 
<li> <b>Key for lock of medium (K175031) RBS (B0032) from the lock/key library TUD09, <a href="http://parts.igem.org/Part:BBa_K175032"> BBa_K175032</a></b>: This biobrick generates a mRNA which forms a secondary structure that opens LMR (K175031).
<li> <b>Key for lock of medium (K175031) RBS (B0032) from the lock/key library TUD09, <a href="http://parts.igem.org/Part:BBa_K175032"> BBa_K175032</a></b>: This biobrick generates a mRNA which forms a secondary structure that opens LMR (K175031).
 +
<li> <b>B0034 derived RBS to match spacing of J01122, <a href="http://parts.igem.org/Part:BBa_J23080"> BBa_J23080</a></b>: RBS spacing modification to [RBS] such that the spacing between the shine-delgarno and the ORF is the same as it is in J01122.
 +
</ul>
</ul>
</p>
</p>
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<ul>
<ul>
-
<li><b>Riboregulator Key 1, <a href= "http://parts.igem.org/Part:BBa_J01008">BBa_J01008</a></b> (Golden Bear, 2005): BioBricked version of Isaacs' riboregulator trans-activating key, taR12
+
<li> <b>HKUST Lock 1, <a href= "http://parts.igem.org/Part:BBa_K1379018"> BBa_K1379018</a></b>: Cis-Repressor HKUST Lock 1.
-
<li><b>Lock 3c, <a href= "http://parts.igem.org/Part:BBa_J23031">BBa_J23031</a></b> (Team Berkeley iGEM, 2006): lock3c.
+
<li> <b>HKUST Key 1, <a href= "http://parts.igem.org/Part:BBa_K1379019"> BBa_K1379019</a></b>: Trans-Activator for HKUST Key 1.
-
<li><b>Key 3c, <a href= "http://parts.igem.org/Part:BBa_J23008">BBa_J23008</a></b> (Berkeley iGEM, 2006): Encodes a short RNA sequence that "unlocks" the biobrick part J01122 (<a href= "http://parts.igem.org/Part:BBa_J01122">lock3</a>) which is locked RFP.
+
<li> <b>HKUST Lock 1-GFP-B0015, <a href= "http://parts.igem.org/Part:BBa_K1379028> BBa_K1379028</a></b>: Cis-repressed GFP Generator HKUST Lock 1
</ul>
</ul>
<br>
<br>
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<p><b>We constructed the following intermediates/measurement devices during characterization:</b>
<p><b>We constructed the following intermediates/measurement devices during characterization:</b>
<ul>
<ul>
-
<li> <b>Key 1 Double Terminator, <a href="http://parts.igem.org/Part:BBa_K1379021"> BBa_K1379021</a></b>
+
<li> <b>Key 1 Double Terminator, <a href="http://parts.igem.org/Part:BBa_K1379021"> BBa_K1379021</a></b>*
-
<li> <b>Key 3 double terminator, <a href="http://parts.igem.org/Part:BBa_K1379023"> BBa_K1379023</a></b>
+
 
-
<li> <b>Key 3c double terminator, <a href="http://parts.igem.org/Part:BBa_K1379025"> BBa_K1379025</a></b>
+
<li> <b>Key 3-B0015, <a href="http://parts.igem.org/Part:BBa_K1379023"> BBa_K1379023</a></b>
-
<li> <b>MTA double terminator, <a href="http://parts.igem.org/Part:BBa_K1379027"> BBa_K1379027</a></b>
+
 
-
<li> <b>HKUST Key 1 double terminator, <a href="http://parts.igem.org/Part:BBa_K1379029"> BBa_K1379029</a></b>
+
<li> <b>Key 3c double terminator, <a href="http://parts.igem.org/Part:BBa_K1379025"> BBa_K1379025</a></b>*
-
<li> <b>Cis-Repressing device 1, <a href="http://parts.igem.org/Part:BBa_K1379030"> BBa_K1379030</a></b>
+
 
-
<li> <b>AraC Key 1, <a href="http://parts.igem.org/Part:BBa_K1379031"> BBa_K1379031</a></b>
+
<li> <b>K175032-B0015, <a href="http://parts.igem.org/Part:BBa_K1379027"> BBa_K1379027</a></b>
-
<li> <b>Cis-Repressing device 3, <a href="http://parts.igem.org/Part:BBa_K1379032"> BBa_K1379032</a></b>
+
<li> <b>HKUST Key 1-B0015, <a href="http://parts.igem.org/Part:BBa_K1379029"> BBa_K1379029</a></b>
-
<li> <b>AraC Key 3, <a href="http://parts.igem.org/Part:BBa_K1379033"> BBa_K1379033</a></b>
+
<li> <b>J23102-Lock 1-GFP-B0015, <a href="http://parts.igem.org/Part:BBa_K1379030"> BBa_K1379030</a></b>
-
<li> <b>Cis-Repressing device 3C, <a href="http://parts.igem.org/Part:BBa_K1379034"> BBa_K1379051</a></b>
+
 
-
<li> <b>AraC Key 3C, <a href="http://parts.igem.org/Part:BBa_K1379035"> BBa_K1379035</a></b>
+
<li> <b>AraC Key 1, <a href="http://parts.igem.org/Part:BBa_K1379031"> BBa_K1379031</a></b>*
-
<li> <b>Cis-Repressing device MCR, <a href="http://parts.igem.org/Part:BBa_K1379036"> BBa_K1379036</a></b>
+
 
-
<li> <b>AraC MTA, <a href="http://parts.igem.org/Part:BBa_K1379037"> BBa_K1379037</a></b>
+
<li> <b>J23102-Lock 3-GFP-B0015, <a href="http://parts.igem.org/Part:BBa_K1379032"> BBa_K1379032</a></b>
-
<li> <b>Cis-Repressing device HKUST 1, <a href="http://parts.igem.org/Part:BBa_K1379038"> BBa_K1379038</a></b>
+
<li> <b>pBad/araC-Key 3, <a href="http://parts.igem.org/Part:BBa_K1379033"> BBa_K1379033</a></b>
-
<li> <b>AraC HKUST Key 1, <a href="http://parts.igem.org/Part:BBa_K1379039"> BBa_K1379039</a></b>
+
<li> <b>J23102-Lock 3c-GFP-B0015, <a href="http://parts.igem.org/Part:BBa_K1379034"> BBa_K1379034</a></b>
 +
<li> <b>pBad/araC-Key 3c, <a href="http://parts.igem.org/Part:BBa_K1379035"> BBa_K1379035</a></b>
 +
<li> <b>J23102-K175031-GFP-B0015, <a href="http://parts.igem.org/Part:BBa_K1379036"> BBa_K1379036</a></b>
 +
<li> <b>pBad/araC-K175032, <a href="http://parts.igem.org/Part:BBa_K1379037"> BBa_K1379037</a></b>
 +
<li> <b>J23102-HKUST Lock 1-GFP-B0015, <a href="http://parts.igem.org/Part:BBa_K1379038"> BBa_K1379038</a></b>
 +
<li> <b>pBad/araC-HKUST Key 1, <a href="http://parts.igem.org/Part:BBa_K1379039"> BBa_K1379039</a></b>
 +
 
<li> <b>Repression device 1, <a href="http://parts.igem.org/Part:BBa_K1379040"> BBa_K1379040</a></b>
<li> <b>Repression device 1, <a href="http://parts.igem.org/Part:BBa_K1379040"> BBa_K1379040</a></b>
<li> <b>Repression device 3, <a href="http://parts.igem.org/Part:BBa_K1379041"> BBa_K1379041</a></b>
<li> <b>Repression device 3, <a href="http://parts.igem.org/Part:BBa_K1379041"> BBa_K1379041</a></b>

Revision as of 21:53, 17 October 2014



Pneumosensor Data Page

This page shows all the parts we have made or used in our whole project. Click on the links below to see our constructs on the Registry of Standard Biological Parts in detail. Click here to access our result page for an overview of our achievements with those parts.


How our system works:



Data For Our Favorite New Parts:

  • σx, BBa_K1379004: gene sequence of competence protein ComX which produces σx factor. σx factor induces promoter containing Com-Box sequence (PcelA and PcomFA).
  • PcelA promoter, BBa_K1379000: a σx-inducible promoter (containing Com-Box sequence) which initiates the transcription of competence CelA protein.
  • PcomFA promoter, BBa_K1379001: a σx-inducible promoter (containing Com-Box sequence) which initiates the transcription of ComFA protein.


Data for Pre-existing Parts:

  • Strong promoter, strong RBS combination, BBa_K880005 (Team Michigan iGEM, 2012): combination of strong constitutive promoter (BBa_J23100) and strong RBS (BBa_B0034) was used as a backbone for a very high level of expression of ComX protein (σx factor).
  • GFP generator, BBa_E0240 (Antiquity Boston University iGEM, 2004): green fluorescent protein reporter (BBa_E0040) with RBS (BBa_B0032) and double terminator (BBa_B0015) was used as a reporter for characterization of PcelA and PcomFA promoters.


We Also Built and Characterized the Following Parts:

  • σx Generator, BBa_K1379006: comX gene sequence was assembled with constitutive promoter, RBS and double terminator so ComX protein is produced constitutively.
  • PcelA-GFP Generator, BBa_K1379002: σx-inducible PcelA promoter was assembled with GFP generator.
  • PcomFA-GFP Generator, BBa_K1379003: σx-inducible PcomFA promoter was assembled with GFP generator.
  • σx Generator, PcelA-GFP Generator, BBa_K1379005: σx-generator was assembled with PcelA-GFP generator. Following the assemblage of both constructs, GFP was successfully expressed.
  • σx Generator, PcomFA-GFP Generator, BBa_K1379007: σx-generator was assembled with PcomFA-GFP generator. Following the assemblage of both constructs, GFP was successfully expressed.



We Built but did not Characterize the Following Parts:

  • comE, BBa_K1379051: gene sequence of response regulator ComE which induces the PcomCDE promoter.



Riboregulator Data Page

This page shows all the parts we have made or used in our whole project. Click on the links below to see our constructs on the Registry of Standard Biological Parts in detail. Click here to access our result page for an overview of our achievements with those parts.

Data and submitted physical DNA for composite constructs used in characterization:

  • Lock 1, BBa_J01008 (Golden Bear, 2005): BioBricked version of Isaacs' riboregulator trans-activating key, taR12
  • Lock3c, BBa_J23031 (Team Berkeley iGEM, 2006): lock3c.
  • Encodes a short RNA sequence that "unlocks" the biobrick part J01122 (lock3) which is locked RFP., BBa_J23008 (Berkeley iGEM, 2006): Key 3c



Parts with qualified sample in the Part Registry:

  • RBS(Lock 3c), BBa_K1379015: B0032 derivate for Lock 3C.
  • Lock 1-GFP-B0015, BBa_K1379020: Cis-repressed GFP Generator Lock 1
  • Lock 3-GFP-B0015, BBa_K1379024: Cis-repressed GFP Generator Lock 3C
  • K175031-GFP-B0015, BBa_K1379046: GFP generator using a Lock 1 modified RBS.
  • RBS(Lock 3c)-GFP-B0015, BBa_K1379048: Repression measurement device 1 with trans activator.


Data and submitted physical DNA for parts without qualified sample in the Part Registry:

  • Inducible pBad/araC promoter, BBa_I0500: Inducible pBad/araC promoter.
  • Riboregulator Lock 1, BBa_J01010:Biobrick version of Isaacs' riboregulator cis repressed lock, crR12.
  • Lock3, BBa_J01080: Biobrick version of Isaacs' riboregulator cis repressed lock, crR12, and modified version of Riboregulator Lock 1.
  • Key3, BBa_J01086: Biobricked version of Isaacs' riboregulator trans activating key, taR12, and modified version of Riboregulator Key 1.
  • Lock for medium RBS (B0032) from the lock/key library TUD09, BBa_K175031: This biobrick generates a mRNA which forms a secondary structure blocking the (medium) RBS.
  • Key for lock of medium (K175031) RBS (B0032) from the lock/key library TUD09, BBa_K175032: This biobrick generates a mRNA which forms a secondary structure that opens LMR (K175031).
  • B0034 derived RBS to match spacing of J01122, BBa_J23080: RBS spacing modification to [RBS] such that the spacing between the shine-delgarno and the ORF is the same as it is in J01122.



We also constructed the following parts:

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