Team:Evry/Notebook/Sensing/Phenol/08-18-2014

From 2014.igem.org

(Difference between revisions)
 
Line 28: Line 28:
   
   
<u>Gel extraction</u><br>
<u>Gel extraction</u><br>
-
Extraction of GFP B0031/32 digestion product [XbaI-PstI]
+
Extraction of GFP B0031/32 digestion product [XbaI-PstI]<br>
-
After confirmation of relevant electrophoresis bands, cut the gel all around the band and as close as possible to it.
+
After confirmation of relevant electrophoresis bands, cut the gel all around the band and as close as possible to it.<br>
Place the resulting piece into a 2ml microcentrifuge tube. Add 1µl of Binding buffer to 1 µg of gel. Place the tube at 55°C to 60°C during 10min or until gel turn completely liquid.<br>
Place the resulting piece into a 2ml microcentrifuge tube. Add 1µl of Binding buffer to 1 µg of gel. Place the tube at 55°C to 60°C during 10min or until gel turn completely liquid.<br>
Follow classical DNA purification protocol.<br>
Follow classical DNA purification protocol.<br>

Latest revision as of 22:18, 15 September 2014

Picture

Dna extraction
Machery Nagel DNA purification Kit (PROTOCOL)
PCR using VF2 and VR primer
Q5 polymerase
Expected bands :
DmpR: 2038 bp
GFP B0031: 1331 bp
GFP B0032: 1330 bp
Digestion
DmpR: SpeI&PstI
GFP B0031/32: XbaI&PstI


Analysis
VF2/VR PCR products were in agreement with the expected size either for DmpR and GFP B0031/32.
GFP 31/32 digestion products were in agreement with the expected size.
However DmpR digestion revealed an unexpected profile.

Gel extraction
Extraction of GFP B0031/32 digestion product [XbaI-PstI]
After confirmation of relevant electrophoresis bands, cut the gel all around the band and as close as possible to it.
Place the resulting piece into a 2ml microcentrifuge tube. Add 1µl of Binding buffer to 1 µg of gel. Place the tube at 55°C to 60°C during 10min or until gel turn completely liquid.
Follow classical DNA purification protocol.
Machery Nagel kit (PROTOCOL 2)

Aug 18