Team:ETH Zurich/modeling/xor

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{{:Team:ETH Zurich/tpl/head|XOR Gate}}
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[[File:ETH_Zurich_XOR_Logic_Gate.png|400px|center|thumb|Truth table of the XOR logic gate.]]
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[[File:ETH_Zurich_XOR_Logic_Gate.png|400px|center|thumb|'''Figure 1''' Truth table of the XOR logic gate.]]
=== Biological Principles ===
=== Biological Principles ===
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[[File:ETH Zurich XOR Toffs.png|400px|center|thumb|Decomposition of the on output into two terminator states.]]
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[[File:ETH Zurich XOR Toffs.png|400px|center|thumb|'''Figure 2''' Decomposition of the on output into two terminator states.]]
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[[File:ETH Zurich XOR Tons.png|400px|center|thumb|Decomposition of the off output into two terminator states.]]
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[[File:ETH Zurich XOR Tons.png|400px|center|thumb|'''Figure 3''' Decomposition of the off output into two terminator states.]]
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=== XOR bio''logic''  gate ===
=== XOR bio''logic''  gate ===
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[[File:ETH_Zurich_XOR_Biologic_Gate.png|center|600px|thumb|Truth table of the XOR biologic gate: Summary of the model, coupled with the biological explanation.]]
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[[File:ETH_Zurich_XOR_Biologic_Gate.png|center|600px|thumb|'''Figure 4''' Truth table of the XOR biologic gate: Summary of the model, coupled with the biological explanation.]]
=== Other Chemical Species ===
=== Other Chemical Species ===
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\end{align*}$$<html></center></html>
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To have the equivalent for the strain producing LuxAHL as output, it suffices to remplace every occurence of LasI by LuxI.
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To have the equivalent for the strain producing LuxAHL as output, it suffices to replace every occurence of LasI by LuxI.
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== Transfer Function ==
== Transfer Function ==
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At steady state, the transfer function obtained by simulation is shown on the next figure. It is remarkable to see that even a little amount of one integrase is sufficient to switch the XOR gate on.
At steady state, the transfer function obtained by simulation is shown on the next figure. It is remarkable to see that even a little amount of one integrase is sufficient to switch the XOR gate on.
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[[File:ETHZ_XORmodule.png|center|600px|thumb|The behaviour of XOR module as a function of activated Bxb1 sites (SABxb1) and ΦC31 sites (SAΦC31). The XOR behaviour is continuous since we modelled it deterministically.]]
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[[File:ETHZ_XORmodule.png|center|600px|thumb|'''Figure 5''' The behaviour of XOR module as a function of activated Bxb1 sites (SABxb1) and ΦC31 sites (SAΦC31). The XOR behaviour is continuous since we modelled it deterministically.]]
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Latest revision as of 23:33, 17 October 2014

iGEM ETH Zurich 2014