Team:ETH Zurich/modeling/int

From 2014.igem.org

(Difference between revisions)
m (Parameter fitting)
m (Chemical Species)
Line 23: Line 23:
|-
|-
|'''Bxb1'''
|'''Bxb1'''
-
|Serine integrase that can fold into two conformations called Bxb1a and Bxb1b. Even if those conformations have the same sequence of amino acids, their tertiary structure is different. As it is experimentally difficult to differentiate these two conformations, we chose to to use a common notation for both conformations.
+
|Serine integrase that can fold into two conformations - Bxb1a and Bxb1b. We chose to use a common connotation for both conformations - Bxb1.
|-
|-
|'''ΦC31'''
|'''ΦC31'''
-
|Serine integrase that can fold into two conformations called ΦC31a and ΦC31b. Similarly to Bxb1, we chose to use a common notation for both conformations.
+
|Serine integrase that can fold into two conformations - ΦC31a and ΦC31b. We chose to use a common connotation for both conformations - ΦC31.
|-
|-
|'''DBxb1'''
|'''DBxb1'''
-
|Dimer of Bxb1. Bxb1a (respectively Bxb1b) forms a dimer DBxb1a (respectively DBxb1b). To be coherent, dimers are not differentiated depending on their spatial configuration.
+
|Dimerized form of Bxb1. We chose to use a common connotation for both homodimers, DBxb1a and DBxb1b.
|-
|-
|'''DΦC31'''
|'''DΦC31'''
-
|Dimer of ΦC31. ΦC31a (respectively ΦC31b) forms a dimer DΦC31a (respectively DΦC31b). The different spatial configuration are not taken into account.
+
|Dimerized form of ΦC31. We chose to use a common connotation for both homodimers, DΦC31a and DΦC31b.
|}
|}

Revision as of 15:07, 14 October 2014

iGEM ETH Zurich 2014