Team:CSU Fort Collins/Notebook/Protocols

From 2014.igem.org

Revision as of 00:39, 16 October 2014 by Ossmith (Talk | contribs)

<head>

<link href='http://fonts.googleapis.com/css?family=Bitter:400,700,400italic' rel='stylesheet' type='text/css'> <link href='http://fonts.googleapis.com/css?family=Muli:300,400' rel='stylesheet' type='text/css'>


<style type="text/css"> /* http://meyerweb.com/eric/tools/css/reset/

  v2.0 | 20110126
  License: none (public domain)
  • /

html, body, div, span, applet, object, iframe, p, blockquote, pre, a, abbr, acronym, address, big, cite, code, del, dfn, em, img, ins, kbd, q, s, samp, small, strike, strong, sub, sup, tt, var, b, u, i, center, dl, dt, dd, ol, ul, li, fieldset, form, label, legend, table, caption, tbody, tfoot, thead, tr, th, td, article, aside, canvas, details, embed, figure, figcaption, footer, header, hgroup, menu, nav, output, ruby, section, summary, time, mark, audio, video {

 margin: 0;
 padding: 0;
 border: 0;
 font-size: 90%;
 font: inherit;
 vertical-align: baseline;

} /* HTML5 display-role reset for older browsers */ article, aside, details, figcaption, figure, footer, header, hgroup, menu, nav, section {

 display: block;

} body {

 line-height: 1;

} ol, ul {

 list-style: none;

} blockquote, q {

 quotes: none;

} blockquote:before, blockquote:after, q:before, q:after {

 content: ;
 content: none;

} table {

 border-collapse: collapse;
 border-spacing: 0;

}

  1. menubar > ul{
 vertical-align:center;
 font-size:14px;
 font-family:'Times New Roman',serif;

}

.firstHeading{ display:none; }

  1. textbox span{
 color:#E6B800;

} .photo{

 width:70%;

} table{

 font-family:'Muli',sans-serif;

} body{

 background-color:#EFEFEF;
 line-height:1.3;
 font-size:90%;

}

  1. cssmenu {
 width:100%;
 height: 44px;
 background: #222222;
 position:relative;
 text-align:center;
 margin:auto;

}

  1. cssmenu ul {
 list-style: none;
 padding: 0;
 margin: 0;
 line-height: 1;

}

  1. cssmenu > ul {
 position: relative;
 display: block;
 background: #222222;
 width: 100%;
 z-index: 500;

}

  1. cssmenu:after,
  2. cssmenu > ul:after {
 content: '.';
 display: block;
 clear: both;
 visibility: hidden;
 line-height: 0;
 height: 0;

}

  1. cssmenu.align-right > ul > li {
 float: right;

}

  1. cssmenu.align-center ul {
 text-align: center;

}

  1. cssmenu.align-center ul ul {
 text-align: left;

}

  1. cssmenu > ul > li {
 display: inline-block;
 position: relative;
 margin: 0;
 padding: 0;

}

  1. cssmenu > ul > #menu-button {
 display: none;

}

  1. cssmenu ul li a {
 display: block;
 font-family: Helvetica, sans-serif;
 text-decoration: none;

}

  1. cssmenu > ul > li > a {
 font-size: 14px;
 font-weight: bold;
 padding: 15px 20px;
 color: #efefef;
 text-transform: uppercase;
 -webkit-transition: color 0.25s ease-out;
 -moz-transition: color 0.25s ease-out;
 -ms-transition: color 0.25s ease-out;
 -o-transition: color 0.25s ease-out;
 transition: color 0.25s ease-out;

}

  1. cssmenu > ul > li.has-sub > a {
 padding-right: 32px;

}

  1. cssmenu > ul > li:hover > a {
 color: #E6B800;

}

  1. cssmenu li.has-sub::after {
 display: block;
 content: ;
 position: absolute;
 width: 0;
 height: 0;

}

  1. cssmenu > ul > li.has-sub::after {
 right: 10px;
 top: 20px;
 border: 5px solid transparent;
 border-top-color: #efefef;

}

  1. cssmenu > ul > li:hover::after {
 border-top-color: #E6B800;

}

  1. indicatorContainer {
 position: absolute;
 height: 12px;
 width: 100%;
 bottom: 0px;
 overflow: hidden;
 z-index: -1;

}

  1. pIndicator {
 position: absolute;
 height: 0;
 width: 100%;
 border: 12px solid transparent;
 border-top-color: #2b2f3a;
 z-index: -2;
 -webkit-transition: left .25s ease;
 -moz-transition: left .25s ease;
 -ms-transition: left .25s ease;
 -o-transition: left .25s ease;
 transition: left .25s ease;

}

  1. cIndicator {
 position: absolute;
 height: 0;
 width: 100%;
 border: 12px solid transparent;
 border-top-color: #2b2f3a;
 top: -12px;
 right: 100%;
 z-index: -2;

}

  1. cssmenu ul ul {
 position: absolute;
 left: -9999px;
 top: 70px;
 opacity: 0;
 -webkit-transition: opacity .3s ease, top .25s ease;
 -moz-transition: opacity .3s ease, top .25s ease;
 -ms-transition: opacity .3s ease, top .25s ease;
 -o-transition: opacity .3s ease, top .25s ease;
 transition: opacity .3s ease, top .25s ease;
 z-index: 1000;

}

  1. cssmenu ul ul ul {
 top: 37px;
 padding-left: 5px;

}

  1. cssmenu ul ul li {
 position: relative;

}

  1. cssmenu > ul > li:hover > ul {
 left: auto;
 top: 44px;
 opacity: 1;

}

  1. cssmenu.align-right > ul > li:hover > ul {
 left: auto;
 right: 0;
 opacity: 1;

}

  1. cssmenu ul ul li:hover > ul {
 left: 170px;
 top: 0;
 opacity: 1;

}

  1. cssmenu.align-right ul ul li:hover > ul {
 left: auto;
 right: 170px;
 top: 0;
 opacity: 1;
 padding-right: 5px;

}

  1. cssmenu ul ul li a {
 width: 130px;
 border-bottom: 1px solid #eeeeee;
 padding: 10px 20px;
 font-size: 12px;
 color: #222222;
 background: white;
 -webkit-transition: all .35s ease;
 -moz-transition: all .35s ease;
 -ms-transition: all .35s ease;
 -o-transition: all .35s ease;
 transition: all .35s ease;

}

  1. cssmenu.align-right ul ul li a {
 text-align: right;

}

  1. cssmenu ul ul li:hover > a {
 background: white;
 color: #E6B800;

}

  1. cssmenu ul ul li:last-child > a,
  2. cssmenu ul ul li.last > a {
 border-bottom: 0;

}

  1. cssmenu > ul > li > ul::after {
 content: ;
 border: 6px solid transparent;
 width: 0;
 height: 0;
 border-bottom-color: #efefef;
 position: absolute;
 top: -12px;
 left: 30px;

}

  1. cssmenu.align-right > ul > li > ul::after {
 left: auto;
 right: 30px;

}

  1. cssmenu ul ul li.has-sub::after {
 border: 4px solid transparent;
 border-left-color: #222222;
 right: 10px;
 top: 12px;
 -moz-transition: all .2s ease;
 -ms-transition: all .2s ease;
 -o-transition: all .2s ease;
 transition: all .2s ease;
 -webkit-transition: -webkit-transform 0.2s ease, right 0.2s ease;

}

  1. cssmenu.align-right ul ul li.has-sub::after {
 border-left-color: transparent;
 border-right-color: #222222;
 right: auto;
 left: 10px;

}

  1. cssmenu ul ul li.has-sub:hover::after {
 border-left-color: #efefef;
 right: -5px;
 -webkit-transform: rotateY(180deg);
 -ms-transform: rotateY(180deg);
 -moz-transform: rotateY(180deg);
 -o-transform: rotateY(180deg);
 transform: rotateY(180deg);

}

  1. cssmenu.align-right ul ul li.has-sub:hover::after {
 border-right-color: #efefef;
 border-left-color: transparent;
 left: -5px;
 -webkit-transform: rotateY(180deg);
 -ms-transform: rotateY(180deg);
 -moz-transform: rotateY(180deg);
 -o-transform: rotateY(180deg);
 transform: rotateY(180deg);

} @media all and (max-width: 800px), only screen and (-webkit-min-device-pixel-ratio: 2) and (max-width: 1024px), only screen and (min--moz-device-pixel-ratio: 2) and (max-width: 1024px), only screen and (-o-min-device-pixel-ratio: 2/1) and (max-width: 1024px), only screen and (min-device-pixel-ratio: 2) and (max-width: 1024px), only screen and (min-resolution: 192dpi) and (max-width: 1024px), only screen and (min-resolution: 2dppx) and (max-width: 1024px) {

 #cssmenu {
   width: 100%;
 }
 #cssmenu.align-center ul {
   text-align: left;
 }
 #cssmenu.align-right > ul > li {
   float: none;
 }
 #cssmenu ul {
   width: auto;
 }
 #cssmenu .submenuArrow,
 #cssmenu #indicatorContainer {
   display: none;
 }
 #cssmenu > ul {
   height: auto;
   display: block;
   color:#EFEFEF;
 }
 #cssmenu > ul > li {
   float: none;
 }
 #cssmenu li,
 #cssmenu > ul > li {
   display: none;
   color:white;
 }
 #cssmenu ul ul,
 #cssmenu ul ul ul,
 #cssmenu ul > li:hover > ul,
 #cssmenu ul ul > li:hover > ul,
 #cssmenu.align-right ul ul,
 #cssmenu.align-right ul ul ul,
 #cssmenu.align-right ul > li:hover > ul,
 #cssmenu.align-right ul ul > li:hover > ul {
   position: relative;
   left: auto;
   top: auto;
   opacity: 1;
   padding-left: 0;
   padding-right: 0;
   right: auto;
 }
 #cssmenu ul .has-sub::after {
   display: none;
 }
 #cssmenu ul li a {
   padding: 12px 20px;
 }
 #cssmenu ul ul li a {
   border: 0;
   background: none;
   width: auto;
   padding: 8px 35px;
   color:white;
 }
 #cssmenu.align-right ul ul li a {
   text-align: left;
 }
 #cssmenu ul ul li:hover > a {
   background:none;
   color: #ec9359;
 }
 #cssmenu ul ul ul a {
   padding: 8px 50px;
 }
 #cssmenu ul ul ul ul a {
   padding: 8px 65px;
 }
 #cssmenu ul ul ul ul ul a {
   padding: 8px 80px;
 }
 #cssmenu ul ul ul ul ul ul a {
   padding: 8px 95px;
 }
 #cssmenu > ul > #menu-button {
   display: block;
   cursor: pointer;
 }
 #cssmenu #menu-button > a {
   padding: 14px 20px;
 }
 #cssmenu ul.open li,
 #cssmenu > ul.open > li {
   display: block;
 }
 #cssmenu > ul.open > li#menu-button > a {
   color: #fff;
   border-bottom: 1px solid rgba(150, 150, 150, 0.1);
 }
 #cssmenu ul ul::after {
   display: none;
 }
 #cssmenu #menu-button::after {
   display: block;
   content: ;
   position: absolute;
   height: 3px;
   width: 22px;
   border-top: 2px solid #efefef;
   border-bottom: 2px solid #efefef;
   right: 20px;
   top: 15px;
 }
 #cssmenu #menu-button::before {
   display: block;
   content: ;
   position: absolute;
   height: 3px;
   width: 22px;
   border-top: 2px solid #efefef;
   right: 20px;
   top: 25px;
 }
 #cssmenu ul.open #menu-button::after,
 #cssmenu ul.open #menu-button::before {
   border-color: #fff;
 }

} .icon{

 width:30px;

} .wrapper2{

 width:20%;
 padding:20px 0px 20px 20px;
 display:inline-block;
 margin:auto;
 vertical-align:top;

} .wrapper{

 width:90%;
 padding:20px 0px 20px 20px;
 padding-left:0;
 margin:auto;
 vertical-align: top;

} .page, .container{

 width:50%;
 min-width:600px;
 max-width:800px;
 padding:30px;
 margin:auto;
 text-align:left;
 font-family:'Muli',sans-serif;
 display:inline-block;

} .page a, .container a{

 color:#222222;

} .page a:hover, .container a:hover{

 color:#E6B800;
 text-decoration:none;

}

h1{

 color:#222222;
 font-family:'Bitter',serif;
 border-bottom:none;

} h2,h3,.toc,.show,.hide,.content{

 color:#222222;
 font-family:'Bitter',serif;
 border:none;

} h2{

 color:#E6B800

} h4,h5,h6, .page{

 color:#222222;
 font-family:'Muli',sans-serif;

} .toc{

 text-decoration:none;
 display:none;
 width:100%;
 margin:auto;

} .toc .month-group { margin: 20px 0; } .toc .month-group p { padding: 0; margin: 0; }

  1. ftoc{
 color:#666666;

} ul{

 list-style-type:none;

} .month-group, a{

 text-decoration:none;

} .month-group{

 margin-left:20px;

} .month-group:hover{

 color:#E6B800;

} .toc a, .toc2 a, #navi a{

 text-decoration:none;
 color:#222222;
 font-weight: bold;

} .toc a:hover, #ftoc>a:hover, #navi a:hover, .show:hover, .hide:hover, .container>a:hover{

 color:#E6B800 !important;
 cursor:pointer;

} .toc a, #ftoc, .container a, #navi{

 border-bottom:2px dotted;

}

  1. navi{
 text-decoration:none;
 font-family:'Bitter',serif;

}

  1. logo{
 width:120px;
 margin:auto;
 padding:40px;
 border-radius:100%;

}

  1. banner{
 width:auto;
 height:250px;
 vertical-align:top;
 background-color:#E6B800;
 overflow: hidden

}

  1. banner a:hover{

opacity:0.8; } .fixed {

 position:fixed !important;
 top:0;

} .disp{

 display:none;

} .col {

    width: 20%;
    float: left;
    clear: right;
    margin: 20px 1.66666666666666666666666666%;
    font-family:'Muli',sans-serif;
    font-weight:300;
    font-size:14px;
    color:#222222;
    text-align:left;

} .clear{

 width:100%;
 clear:both;

} .container{

 line-height:1.9;

} .index{

 margin-right:20px;

} .toc2{

 display:block;

} .footer{

    background-color:#222222;
    width:100%;
    margin:auto;
    padding:15px;
    color:#efefef;
    font-size:14px;

} .footer table{

   background-color:#222222;
   color:#efefef;
   margin:auto;

} .footer a{

   color:#efefef;

}


</style>


</head>


<body style='margin:0'>

  • <a href='/Team:CSU_Fort_Collins'>Home</a>
  • <a href='/Team:CSU_Fort_Collins/Project/'>Project</a>
    • <a href='/Team:CSU_Fort_Collins/Biosensor/'>Biosensor</a>
    • <a href='/Team:CSU_Fort_Collins/Breakdown/'>Breakdown</a>
    • <a href='/Team:CSU_Fort_Collins/HVP/'>High-Value Product</a>
    • <a href='/Team:CSU_Fort_Collins/KillSwitch/'>Kill Switch</a>
  • <a href='/Team:CSU_Fort_Collins/Members/'>Team</a>
    • <a href='/Team:CSU_Fort_Collins/Members/'>Members</a>
    • <a href='/Team:CSU_Fort_Collins/Sponsors/'>Sponsors</a>
    • <a href='/Team:CSU_Fort_Collins/Acknowledgements/'>Acknowledgements</a>
  • <a href='/Team:CSU_Fort_Collins/Notebook/'>Notebook</a>
    • <a href='/Team:CSU_Fort_Collins/Notebook/Protocols'>Protocols</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Gibson">Gibson Assembly</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Cloning">Cloning Genes</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Miniprep">Plasmid Miniprep</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Isolation">Yeast DNA Isolation</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Gel">Gel Electrophoresis</a>
      • <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Purify">PCR Product Purification</a>
    • <a href='/Team:CSU_Fort_Collins/Notebook/DailyNotes'>Daily Notes</a>
      • <a href='/Team:CSU_Fort_Collins/Notebook/Biosensor/Jun'>Biosensor</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/Biosensor/Jun">June</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/Biosensor/Jul">July</a>
        • <a href='/Team:CSU_Fort_Collins/Notebook/Biosensor/Aug'>August</a>
      • <a href='/Team:CSU_Fort_Collins/Notebook/Breakdown/Jul'>Breakdown</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/Breakdown/Jul">July</a>
        • <a href='/Team:CSU_Fort_Collins/Notebook/Breakdown/Aug'>August</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/Breakdown/Sep">September</a>
      • <a href='/Team:CSU_Fort_Collins/Notebook/HVP/Jun'>High-Value Product</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/HVP/Jun">June</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/HVP/Jul">July</a>
        • <a href='/Team:CSU_Fort_Collins/Notebook/HVP/Aug'>August</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/HVP/Sep">September</a>
      • <a href='/Team:CSU_Fort_Collins/Notebook/KillSwitch/Jul'>Kill Switch</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/KillSwitch/Jul">July</a>
        • <a href="/Team:CSU_Fort_Collins/Notebook/KillSwitch/Sep">September</a>
  • <a href='/Team:CSU_Fort_Collins/HumPrac/'>Human Practices</a>
    • <a href='/Team:CSU_Fort_Collins/Collab/'>Collaboration</a>
    • <a href='/Team:CSU_Fort_Collins/Outreach/'>Outreach</a>
  • <a href='/Team:CSU_Fort_Collins/Achievements/'>Achievements</a>
    • <a href='/Team:CSU_Fort_Collins/Parts/'>Parts</a>
    • <a href='/Team:CSU_Fort_Collins/Judging/'>Judging</a>
  • <a href='/Team:CSU_Fort_Collins/Safety/'>Safety</a>


Table of Contents


     <center><a href='/Team:CSU_Fort_Collins/Notebook/' id='ftoc'>← Full Table of Contents</a>
</center>

Protocols

     Protocols describe specific procedures and provide detailed instructions for common wet lab tasks. 

     01 
     <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Gibson" class='month-group'>Gibson Assembly</a>: A Method for Cloning Multiple Genes Into a Plasmid
02 <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Cloning" class='month-group'>Cloning Genes</a>: A Method for Cloning 1 or 2 Genes Into a Plasmid
03 <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Miniprep" class='month-group'>Plasmid Miniprep</a>: A Method for Extracting DNA from a Plasmid
04 <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Isolation" class='month-group'>Yeast DNA Extraction</a>
05 <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Gel" class='month-group'>Gel Electrophoresis</a>: A Method for Analyzing Sizes of DNA Fragments
06 <a href="/Team:CSU_Fort_Collins/Notebook/Protocols=Purify" class='month-group'>PCR Product Purification</a>: A Method for Cleaning Up PCR Products




<script type="text/javascript" src="https://code.jquery.com/jquery-2.1.1.min.js"></script> <script type='text/javascript'>

$('#cssmenu').prepend('
');
     var activeElement = $('#cssmenu>ul>li:first');
     $('#cssmenu>ul>li').each(function() {
         if ($(this).hasClass('active')) {
             activeElement = $(this);
         }
     });


   var posLeft = activeElement.position().left;
   var elementWidth = activeElement.width();
   posLeft = posLeft + elementWidth/2 -6;
   if (activeElement.hasClass('has-sub')) {
     posLeft -= 6;
   }
   $('#cssmenu #pIndicator').css('left', posLeft);
   var element, leftPos, indicator = $('#cssmenu pIndicator');
   
   $("#cssmenu>ul>li").hover(function() {
         element = $(this);
         var w = element.width();
         if ($(this).hasClass('has-sub'))
         {
           leftPos = element.position().left + w/2 - 12;
         }
         else {
           leftPos = element.position().left + w/2 - 6;
         }
         $('#cssmenu #pIndicator').css('left', leftPos);
     }
     , function() {
       $('#cssmenu #pIndicator').css('left', posLeft);
     });
$('#cssmenu>ul').prepend('